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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR31089
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 19 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.016s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0292619.1
n.a. PREDICTED: cyclic dof factor 4-like [Cicer arietinum] gi|502078275|ref|XP_004485893.1| chr0 151886610 151888478 -
1 domain prediction
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Lj0g3v0335469.1
n.a. PREDICTED: dof zinc finger protein DOF5.2-like [Glycine max] gi|356571789|ref|XP_003554055.1| chr0 175709315 175712656 +
1 domain prediction
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Lj1g3v0513130.1
n.a. PREDICTED: dof zinc finger protein DOF3.3-like [Glycine max] gi|356516810|ref|XP_003527086.1| chr1 6529434 6532427 +
1 domain prediction
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Lj1g3v2975990.1
n.a. PREDICTED: dof zinc finger protein DOF5.2-like [Glycine max] gi|356567050|ref|XP_003551736.1| chr1 33748324 33752063 +
1 domain prediction
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Lj1g3v3991510.1
n.a. PREDICTED: dof zinc finger protein DOF5.2-like [Glycine max] gi|356571789|ref|XP_003554055.1| chr1 47392757 47395467 +
1 domain prediction
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Lj2g3v1277700.1
n.a. PREDICTED: dof zinc finger protein DOF5.2-like [Glycine max] gi|356502549|ref|XP_003520081.1| chr2 20416666 20419816 -
1 domain prediction
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Lj4g3v1635580.1
n.a. PREDICTED: dof zinc finger protein DOF3.3 [Glycine max] gi|356562852|ref|XP_003549682.1| chr4 24093329 24096281 +
1 domain prediction
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Lj4g3v2604580.1
n.a. PREDICTED: cyclic dof factor 4-like [Fragaria vesca subsp]. vesca] gi|470115510|ref|XP_004293942.1| chr4 35251827 35253302 -
1 domain prediction
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LotjaGi1g1v0220800.1
n.a. Dof zinc finger protein; TAIR: AT3G47500.1 cycling DOF factor 3; Swiss-Prot: sp|Q8LFV3|CDF3_ARATH Cyclic dof factor 3; TrEMBL-Plants: tr|A0A0B2NXU5|A0A0B2NXU5_GLYSO Dof zinc finger protein DOF3.3; Found in the gene: LotjaGi1g1v0220800 LjG1.1_chr1 49066214 49070018 -
1 domain prediction
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LotjaGi1g1v0504600.1
n.a. Dof zinc finger protein; TAIR: AT5G39660.1 cycling DOF factor 2; Swiss-Prot: sp|Q93ZL5|CDF2_ARATH Cyclic dof factor 2; TrEMBL-Plants: tr|A0A151TC81|A0A151TC81_CAJCA Dof zinc finger protein DOF5.2; Found in the gene: LotjaGi1g1v0504600 LjG1.1_chr1 102212088 102215910 +
1 domain prediction
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LotjaGi1g1v0649100.1
n.a. Dof zinc finger protein; TAIR: AT3G47500.1 cycling DOF factor 3; Swiss-Prot: sp|Q8LFV3|CDF3_ARATH Cyclic dof factor 3; TrEMBL-Plants: tr|I3SQR7|I3SQR7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0649100 LjG1.1_chr1 120702185 120705192 +
1 domain prediction
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LotjaGi2g1v0093900.1
n.a. Dof zinc finger protein; TAIR: AT5G39660.1 cycling DOF factor 2; Swiss-Prot: sp|Q93ZL5|CDF2_ARATH Cyclic dof factor 2; TrEMBL-Plants: tr|A0A0K8K650|A0A0K8K650_CAJCA Dof protein; Found in the gene: LotjaGi2g1v0093900 LjG1.1_chr2 29803378 29806852 -
1 domain prediction
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LotjaGi2g1v0093900.2
n.a. Dof zinc finger protein; TAIR: AT3G47500.1 cycling DOF factor 3; Swiss-Prot: sp|Q93ZL5|CDF2_ARATH Cyclic dof factor 2; TrEMBL-Plants: tr|A0A0K8K650|A0A0K8K650_CAJCA Dof protein; Found in the gene: LotjaGi2g1v0093900 LjG1.1_chr2 29803378 29806852 -
1 domain prediction
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LotjaGi2g1v0302300.1
n.a. Dof zinc finger protein; TAIR: AT3G47500.1 cycling DOF factor 3; Swiss-Prot: sp|Q8LFV3|CDF3_ARATH Cyclic dof factor 3; TrEMBL-Plants: tr|A0A1J7HNV8|A0A1J7HNV8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0302300 LjG1.1_chr2 77637424 77640879 -
1 domain prediction
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LotjaGi3g1v0302800.1
n.a. Dof zinc finger protein; TAIR: AT5G39660.1 cycling DOF factor 2; Swiss-Prot: sp|Q93ZL5|CDF2_ARATH Cyclic dof factor 2; TrEMBL-Plants: tr|K7MCW2|K7MCW2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0302800 LjG1.1_chr3 63201186 63210202 -
1 domain prediction
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LotjaGi3g1v0302800.2
n.a. Dof zinc finger protein; TAIR: AT5G39660.1 cycling DOF factor 2; Swiss-Prot: sp|Q93ZL5|CDF2_ARATH Cyclic dof factor 2; TrEMBL-Plants: tr|G8A1Q8|G8A1Q8_MEDTR DOF-type zinc finger DNA-binding family protein; Found in the gene: LotjaGi3g1v0302800 LjG1.1_chr3 63207296 63210140 -
1 domain prediction
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LotjaGi4g1v0249900.1
n.a. Dof zinc finger protein; TAIR: AT3G47500.1 cycling DOF factor 3; Swiss-Prot: sp|Q8LFV3|CDF3_ARATH Cyclic dof factor 3; TrEMBL-Plants: tr|K7MKW7|K7MKW7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0249900 LjG1.1_chr4 60300544 60303347 +
1 domain prediction
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LotjaGi4g1v0377800_LC.1
n.a. Dof zinc finger protein; TAIR: AT2G34140.1 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp|O22967|CDF4_ARATH Cyclic dof factor 4; TrEMBL-Plants: tr|A0A0L9TL88|A0A0L9TL88_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0377800_LC LjG1.1_chr4 75657224 75661837 -
1 domain prediction
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LotjaGi6g1v0323100_LC.1
n.a. Dof zinc finger protein; TAIR: AT2G34140.1 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp|O22967|CDF4_ARATH Cyclic dof factor 4; TrEMBL-Plants: tr|A0A0S3QZ55|A0A0S3QZ55_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0323100_LC LjG1.1_chr6 63896794 63899955 +
1 domain prediction
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