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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0231800 |
| Transcript ID | LotjaGi1g1v0231800.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb/SANT-like DNA-binding domain protein; TAIR: AT2G24960.1 Myb/SANT-like DNA-binding domain protein; Swiss-Prot: sp|Q9FFJ8|LIMYB_ARATH L10-interacting MYB domain-containing protein; TrEMBL-Plants: tr|K7LI36|K7LI36_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0231800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:54442209..54448189) extracted from Lotus japonicus Gifu genome v1.2.
GATTTCAGACGGCAAGACAAAGACAGGGACCAAGTAGACGATTAACCCTAACAAATAACAAAAAGTAATTAATTTGGATC CGAACGAGGAATTGCAGCCAAACAAAGTATCTCTTTGAGTCGTTTTAGGATAACTTTATTCCCTGTTTGTTCCTACTTCC TGCTTCATGGTTTCACGTCCTTCCTTCCTTCCTTCTTCACATTTCTCAAACACTAGCTACTCTTCGCCGCTGTTTGTTTC TGCTTTTTGGTAAGTCCCTTTTACTTTTCTTTTCTTCCTCTTTTTTTCCTTTCAGCATCCAACACTCATGAATTAGTCTT GTGTTCTGATTATACTTGTAATTGTTCAGAACCCATTGACAAAAAAAAAAAAAAAAAACCCCAAATTCAGAATAGAAATC CTAATTTCACCCAATCTCCTTCCCATAGCTGCTGCCCCATCCACCTCCGACCACCCTCGCGGCCACCGGCGACCACTCCG GTCTCCGGCCACCGCGTCTCTGCTCCATCCAAGCTCTTAGGTCATTTTTCTCTGCAATTTTTTCGTTTTTCCACTCTGTT TCTGCGTCCTCTCACCTCTAACCAAATTCTTCTCCTCATTTGTTACAACTTACAAGTTACAACCTTCTGTTCCTTCTCCT TTCTCCTCTGTCACTGTTTTCTTAAATCTCTGTTTTCTTTCCCCTTTTTAGTGCAAGTGGCATTGGCACTCAACTTGACT ACACTACATTGGGATTGGATGATTAGTTATTTAGATTAAATTTTACTCTTTAGTTAGACTTTATTTTTCATGTCAATTAA AACATCAAGTCTTGAATTTGTCATCATGTTTTGGTAATTGGTATGTAATACTCTCAATGAGAGTATGAGACTTAATATCT ATCTAGTATCTAATAATATCCATTGAACCTTTGTTATAATATTTGCTATTGTTTCTATGATGTTGAGCCTATATTTGATG ATATAAGTTGTTATTAGTTAGCAGAATTTTTTATTTGTTGTATTGTACAATTGCATTATGCAGGTTTTTAATGTGTGTAT GTATAATTGTGTATATATATATAAATATATATATATAATAGATATATATATTTATAATTTTTTTATTAAGGCTGCCGTGG CACCGCCGTGGCATCCGCCATAATTATATGGCGGTATTTTGGCTTTCCTCCATGGACAGCCATCCGTCATTGATAACACT GATCTTTACAAGAGCCGGTTTGATGGAAAGAACACCCTAACAATTTTTGCACGATCTGTGTGATTTTATTATATGTTTTT ACTCCTTATGGCTCTCCATTTTTGTTTTTGGTCATAAGAAGAGAGGATATTCTTTCTTTCTCTCTCTCATTTATGAATCA TGTAACTCCCTCGCAATCTGGTTTTAGCTCGCATTTCACTATAACTAATTATAATATTGAATCCAAAGAACTCTAAACCC ATGTGCAAATATTCACTACCACTGCACCCCCTTCTCTTTTGTCATTGGCTCATTGCCAATCTTCACTAGCCGTGTGGTGT TCTAATCACAGTACTTGGCACATCAGTTTTCGAATTGCACTCGATCTTCCACAATCCTCACTATTATCATTCAAGTTGTG AGTTAAGAATAATCTACTACTTTACAATAGAGTGTTCTTTAATCCACTATTTTTTACCATACATACTTTTGCAAGATATA TATACATTGTTCATTGTGCTATTAATCTAAAGGATGTTTCATTCCATTTGGAATTTGAAATTACGCCTACCATCTCTTTC AGCACTTTCTGTATAGTGGATGTGTGAGTATTATTTAAGGCCTATTATAGTATACTAATTTTGTTGCTACACTTTGTAAT GATCTTCATTTTTTTCAGTGTTGTTTCGAGGTGCAGGAAAATTAACTTTATAGCTTTTGCTTCTGAAATGTGTGCTAGAA TTCCAATGTTAGTATGCTTTTTTATCTATTGGTGGATTATATTAAATTGGTTTTTATCAATTTGTGAATATGATTTTTAT CAATTTGTGAATATGATTTTTATCCTATCCTATTGATTTTATTATAAATTGATATCCTATGAGCATGTATCTTCTTTTAT GCACCACATGTGTTCCCCTCAACCTTTTTCCTTCACTTTTCTAATGTCTTATGTTGCAGAGTATAGGATATGCCGATTTA GCAAGACTTGATCCTCAAATCGGTGGTAAAAGAAAATGCAGTGAATACAGTTATCTTAAGATTACGATTCAGATCATTCT TCTTGATCAGGTGAGAACAGTCCATGGAACACTGGTGACCTGGCAGAAAACACAACTTGTCTGTATGCTTTCTATATGCA TTCGACTTAGACACTTTACATATTAAGATAGACCACATAGAGCTATTTAAAATACTTTCATATGTTGGATAGAGCTATTT AAAATACTTTCATATGTTGTCATGGTGCTACCCCTGTATCTACATATAATCACTGATGTCATAAATATACTTTCTTTTTA AACTTCTAGATTGATATTTTAGAGTTTCACATGCTATTAATAAAATTTACATTTTGATTTCACTGATGTGATTAAAGGAA ACATAATTTCAAAATTCAGATTTGAAATTTTCTGATTATGCTATCATTGGGTGTTAATATAATAGTTGAATTTTACTCAT ACTTCTGACATTTTTTAAATATATAGAAATAAAAAAAGATTTCAGTTGTAAATTAAAATTTGTCAAAAATAAAACAATGG AAGTAGATGTAAAAAGACTCAATTTGTACTTACTAATTGATGGTAAAGGTTAGGGCAGTATGTATTTTGTCATGACTCTG GTTTTTTAATAGAACATAACTAACTTAACACTTTCAACTTAATAAGTAAAGAATCACTTAGCAACCGCGCATCGAGCGGG TCTTAGTCTAGTGCTCATAGAATTGCGGAGCCAGAACACTGAGTTAAGGTTATGGTGATAGTGACATAGTGTGATCTATC TGGTTATTGGATGCCAATTGATTTGGAACTAGCTGTGATATCTTTATAATTTGACTAACTTTGTAAACTTGCACTTTGAT TCTCACAGTTTAGGGTTGGCTCAATTGGCAGAATTAAACAAGGTTGAGGAAAACTGTCTTGTGTTTCCTGCAGCAATAAA CCATTGTTGTGGCTTGTGGTATGCCCTGTGATTTTGAAATTGGCCAACCTCTTGTCCTCTGGTCATCCTAATCTTTCTGA TAAAAAATAAAGTCTGTTTTACGGGTAGAGCCTACCCTCATTGACAATGCTTTCTTTTTTTACTCCTACTTTTATCTACA TATTATGAGAGAGCAATTATTTTTAATCTGCATACTTCTCTCTTTTAATTATTCTGACACGTCTAAATAGGAAGTGAAAT GAGATGTAACATTAAAACTTAGCACTTTGGAGCTTACTTCCATAGTATCTGCAGCATACGGTGTTTGTGTGTGAGATATT GTGTACTGGATATTATTTATGAAGCTGTATATGGTATATGTTCTGGTTGCCTGATAGGATACTTCAGTTGGTGTGGATGT GAGGCCGGCCAAGTTTGTTTGGAATTTGTAGCATCTTCCTTAACCATTTCTTTTGTTACTGGTATAGAAAATGCTGTAAA AAATTGTGGATTATGACAGTGCTGGTGACAGATCAGATTGAGCTAGGGTCAGGGTAGATTATTCTATACAAGTATCATTC ACTGTTGTATTTATATATCTAGCCCCCCCTCCCCTCCCCCCGCCAGTGTTCCTCTAGATTATCATAAAAGAAATTAGGGA AAGATCATTTTGCTTCTTAGATACTAATCCATTTCTATTACAGGTAATGAAATGGGGGATGATGATTCTGTTAGTTTGGA CAACTTCAGGGCTAATTGGACTCCTTCGCAGGACCAATATTTTCTTGAGCTTATGCTATCCCATGTTCACCGTGGGAACA AAACCGGGAAAGTATTTTCTAGAAGAGCCTGGGCGGACATGATTGAACAATTTAACACCACATTTGGGTTGAAGTATGAT ATAGATGTGTTGAAGAATAGGTTCAAACGATTCAGGAAGCAGTACATTGAGATAAAAACGATTATTAGTCAAAAGGGATT CCAGTGGGATAATGCTCTAAACATGATCGTAGCTGGTGAAAAAACATGGGATGAGTATATTAAGGTAGACACTGTCATCA AATATTTCAAAAGCGCTAATGAATCTTTACATTGCTATTTAGCTTGTTTTTCTGCATGCAGGACCACCCCAGTGCCCGAG CTTTCAGAACACGAGTTGTTCCATATTATAATGATATGTGCATAATTTATGGCCATGCAGTTGCTGATGGGAGATACAGC CTTTCATGTTTTGATGTAGATTTTGAATATGAAGGTATAAAGAAACATACACTTTGATCGTTGAATATTATTATATGGTC TGAACAAAATTCCTTTTTCGTTTTCTTCATCAAATTTATTAATTAAGTAGGTAGGAATTTTTCGTTGTGTTTAAACTATT TTTTTTTTTACTCAGACATTGCTTCAAAAGAGTTGGATGACCAGACTACCCCCAGTAAAGGAGTGGATGATCAGACTCCC CCTACTGTTATTAATCAAAGTAAAATTGACTGGTCTCCAATGATGGATCATTTTTTTGTCGAACTAATGGTGGATCAAGT ACGTAAAGGGAACAAGATTGGTCGCTCATTCGATAAGAAGGCTTGGGTAGACATGACAGAGTCTTTTAATGATAGATTTG AATCTCATTATTGTAAGGTTGTCTTGAAAAACCGTTTAAATGTCCTGAGAAGGCATTACTGCTCTATAAATGCCCTCCTC GGAAAAGAAGGTTTTAGTTGGGATAAAAGACAACAGAAGGTTGTGGCTGATGACCAAGTTTGGCAGAAATGCATCAGGGT ATGAAGTGTTCATGATCATTTCTATTTTGTTTTTGATAGTTTTTATTTTCAACCACCATATCACCTACTCGTAATTGCAG GTAAATCACAACTTCCGGCTATATAGAATCAAAAGCATGCCTTTTTATTCTGGCATGTGTATTATATGTCGCGATGAAGC TACTGCGGGCTGCAGGTCAAATCTTGAGAAGGAATCTCCTATTGGCGAGAAATCTGTCCCAGACACTGAGCCTCTCCCTT ACGCAGATAAAGGAGCATTGCATATAGGTGCTGAAAATAATTGTACCAGAGACACTCACCATCTTGCTAATGCAGATAAA GGAGCATTACATATAGGTGCTGAAAATAATTTTACCAGAGACAATCAGCATCTTGCTAATGCATATAAAGAGGCACTGCA TATAGGTGCTGAAACTAATTGTACCAGAGACACTGAGCCTCTTGCTAATGCAGATAGAGAAGCACTGCATATAGGTAGTG AAAAGAACTCTCCCAGAGAAACTCAGCCTCGTGCTAATGCAAATAATGAAGCATTGCATATAGGTGGTGAAAAGAACTCT TCCAGAGAAACTCAGCCTCTTGCTAATGCAGATAATGATCCATTGCTTTCACATGGTGGAAAAAATGCTTCTGGTCACAA GAAAAGGCATGAACCTAAAATGCCTCCAATATTAAATGAGGCTAAGAAAGCAAGGAAATATGATGAGAGCATGGATGCTG CTCTGAAACGTATGGCAGCGGCAGTTAAATCACAAAGCAAGAAAACTAAGAAAGAGGATAACTTTTCTGTTGATAATGTT ATCAGCGTGCTACAGGCTATGCCAGACTTGGATGAGGATCTAATACTAGACGCGTGTGATTTTTTGGAAGATGAGAGAAG AGCAAGGATGTTTCTGGCGTTGGATGCTAATTTGAGAAAGAAATGGTTGCTGAGAAAGCTTCGTTCATAATGATTGGTGA ACCTTGGGGTTATTTCATTTGTAGTCAGGTTTTTAAAATTCTGTTAAACTTCAAGCCAAGCAAACCATGATCTTATATAT ATTCAAGCTCTTGACATATTTGGATGTAAATTAGTTATTCTTATTATGTTTGGCAATTGAT
CDS sequence (LotjaGi1g1v0231800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGATGATGATTCTGTTAGTTTGGACAACTTCAGGGCTAATTGGACTCCTTCGCAGGACCAATATTTTCTTGAGCT TATGCTATCCCATGTTCACCGTGGGAACAAAACCGGGAAAGTATTTTCTAGAAGAGCCTGGGCGGACATGATTGAACAAT TTAACACCACATTTGGGTTGAAGTATGATATAGATGTGTTGAAGAATAGGTTCAAACGATTCAGGAAGCAGTACATTGAG ATAAAAACGATTATTAGTCAAAAGGGATTCCAGTGGGATAATGCTCTAAACATGATCGTAGCTGGTGAAAAAACATGGGA TGAGTATATTAAGGACCACCCCAGTGCCCGAGCTTTCAGAACACGAGTTGTTCCATATTATAATGATATGTGCATAATTT ATGGCCATGCAGTTGCTGATGGGAGATACAGCCTTTCATGTTTTGATGTAGATTTTGAATATGAAGACATTGCTTCAAAA GAGTTGGATGACCAGACTACCCCCAGTAAAGGAGTGGATGATCAGACTCCCCCTACTGTTATTAATCAAAGTAAAATTGA CTGGTCTCCAATGATGGATCATTTTTTTGTCGAACTAATGGTGGATCAAGTACGTAAAGGGAACAAGATTGGTCGCTCAT TCGATAAGAAGGCTTGGGTAGACATGACAGAGTCTTTTAATGATAGATTTGAATCTCATTATTGTAAGGTTGTCTTGAAA AACCGTTTAAATGTCCTGAGAAGGCATTACTGCTCTATAAATGCCCTCCTCGGAAAAGAAGGTTTTAGTTGGGATAAAAG ACAACAGAAGGTTGTGGCTGATGACCAAGTTTGGCAGAAATGCATCAGGGTAAATCACAACTTCCGGCTATATAGAATCA AAAGCATGCCTTTTTATTCTGGCATGTGTATTATATGTCGCGATGAAGCTACTGCGGGCTGCAGGTCAAATCTTGAGAAG GAATCTCCTATTGGCGAGAAATCTGTCCCAGACACTGAGCCTCTCCCTTACGCAGATAAAGGAGCATTGCATATAGGTGC TGAAAATAATTGTACCAGAGACACTCACCATCTTGCTAATGCAGATAAAGGAGCATTACATATAGGTGCTGAAAATAATT TTACCAGAGACAATCAGCATCTTGCTAATGCATATAAAGAGGCACTGCATATAGGTGCTGAAACTAATTGTACCAGAGAC ACTGAGCCTCTTGCTAATGCAGATAGAGAAGCACTGCATATAGGTAGTGAAAAGAACTCTCCCAGAGAAACTCAGCCTCG TGCTAATGCAAATAATGAAGCATTGCATATAGGTGGTGAAAAGAACTCTTCCAGAGAAACTCAGCCTCTTGCTAATGCAG ATAATGATCCATTGCTTTCACATGGTGGAAAAAATGCTTCTGGTCACAAGAAAAGGCATGAACCTAAAATGCCTCCAATA TTAAATGAGGCTAAGAAAGCAAGGAAATATGATGAGAGCATGGATGCTGCTCTGAAACGTATGGCAGCGGCAGTTAAATC ACAAAGCAAGAAAACTAAGAAAGAGGATAACTTTTCTGTTGATAATGTTATCAGCGTGCTACAGGCTATGCCAGACTTGG ATGAGGATCTAATACTAGACGCGTGTGATTTTTTGGAAGATGAGAGAAGAGCAAGGATGTTTCTGGCGTTGGATGCTAAT TTGAGAAAGAAATGGTTGCTGAGAAAGCTTCGTTCATAA
Protein sequence (LotjaGi1g1v0231800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDDDSVSLDNFRANWTPSQDQYFLELMLSHVHRGNKTGKVFSRRAWADMIEQFNTTFGLKYDIDVLKNRFKRFRKQYIE IKTIISQKGFQWDNALNMIVAGEKTWDEYIKDHPSARAFRTRVVPYYNDMCIIYGHAVADGRYSLSCFDVDFEYEDIASK ELDDQTTPSKGVDDQTPPTVINQSKIDWSPMMDHFFVELMVDQVRKGNKIGRSFDKKAWVDMTESFNDRFESHYCKVVLK NRLNVLRRHYCSINALLGKEGFSWDKRQQKVVADDQVWQKCIRVNHNFRLYRIKSMPFYSGMCIICRDEATAGCRSNLEK ESPIGEKSVPDTEPLPYADKGALHIGAENNCTRDTHHLANADKGALHIGAENNFTRDNQHLANAYKEALHIGAETNCTRD TEPLANADREALHIGSEKNSPRETQPRANANNEALHIGGEKNSSRETQPLANADNDPLLSHGGKNASGHKKRHEPKMPPI LNEAKKARKYDESMDAALKRMAAAVKSQSKKTKKEDNFSVDNVISVLQAMPDLDEDLILDACDFLEDERRARMFLALDAN LRKKWLLRKLRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 401 | 401 | 1.8E-262 | – | |
| PANTHER | 1 | 401 | 401 | 1.8E-262 | – | |
| Pfam | 15 | 109 | 95 | 1.7E-26 | ||
| Pfam | 188 | 280 | 93 | 1.6E-26 | ||
| PANTHER | 394 | 572 | 179 | 1.8E-262 | – | |
| PANTHER | 394 | 572 | 179 | 1.8E-262 | – | |
| MobiDBLite | 439 | 454 | 16 | - | – | |
| MobiDBLite | 439 | 476 | 38 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0231800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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