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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0234100 |
| Transcript ID | LotjaGi1g1v0234100.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vesicle transport protein; TAIR: AT5G24170.1 Got1/Sft2-like vescicle transport protein family; Swiss-Prot: sp|O95562|SFT2B_HUMAN Vesicle transport protein SFT2B; TrEMBL-Plants: tr|I1N770|I1N770_SOYBN Vesicle transport protein; Found in the gene: LotjaGi1g1v0234100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:55041573..55048918) extracted from Lotus japonicus Gifu genome v1.2.
GTTACATGTGCAAAACCCTGTGAAGTAAAATCAATGGGAGAATGGTTCAACCAACACTCCCCAGCATACACTGTTTGCAC TGAATTAACTGCTGCTACATATCGTTTTTTAGCTTTACTGGACAATCGTCCACTCCCAATTCTTCAACAATTGCCTTGAC CAACAGGAGCTGCTCTAAGCCATAGCATCTGCTACTCTATTACACTCTAATGTTTTGTTTGTTGTTTCTTTGTTTTTTTT GAATTCCAAAATCCAATTACCAAAATAAAAAATAAAAATTTAACTGCGTCCACACCTACCTCTGAACTTTCGTCTTTTCC ATGCCTATGGCTATGAGAGTGATTCAGTTGCGGTGATTTTCAGCAGAATGCGCTCTCTAGATTTGGATTTTCCAATACTT TGCTCTCTCCGTTGATTGAATTTCTCATTTTCGGTAAGATTCCCTCCAATTTGTTGTCTTCTGATTCATGAAAACTAATC GAAATATCAAAGTGGGGTTGTAGGTTTGTACTGGAAAAGTAAGTAGATTTCCTTGATCATATTTGCTCGAATCAGCAACC AGATAAGAAAGTGCAAGTACAATTGGGAGATTGAATTGTTTCTTTGTTTTTTTTTTTGTTTTGTCTTGGATGTTAGTTGG TCTCCTTGATGGATTCCTCAATTAGCTGTTGGCTTGTTAAACTTTGTGAGGGAAACATTATTGCTATTTTAATTCTAGCA TGGTTATTCTACCCCCTAAAAATAGAATTGCATGTCATTGTATTGAACACTAAAATTAGGTGTTGATTGATTTATAACTA AGCTGTTCCATTTCTTAATTTTTTACACTTGATTAGGTGTTGATTTCTCTGAGGAAAAAAGCTAGTTATATATAATGCTG AAACTAGGTCAGTTTTTATCAAAAGATAATGAAGAGCAAGAGGAGAGCTTGCTGGGTGAGGACTCAGGTGGTCTCTGCTC CCTCTCTCCAACGCAGGTGCTGTCAAAACTTTTTACACAGTTCTAGCTGTTTGAGATTTATTATAACCTAGCCCTTCTAA GTTATAATACTGCTTTTGGTTGTTGATTAAACAGAGAATTTTTGGGTTTGCTGCTTGTTTGGTTGCTGGTCTTGCTTGCA TGTTACTGGTGAGACGAATTTATCTTCTCTTTTTATATATATGTTATGTATATATTTTACGTGTCTTCTTATATGTCGAT TTTCGCTAGTTCAAAATTTTAGTAATAAATAAGTTCTAGTAACTTAATCTCATATAATTAACCAATTCAGTAAATCAATG AGAAAAGGTTCGGTGCAAGTATTTTTGTAGAATGGTGATTTGTTGCACTTTGATGGTATTTCTCCTTTATAGGATATCTT CTATAGCCTATGCTTTACTAGCACAGTAAATATCAAAGATCGGATTTCTTCTGACATTACATCTGTAAGAGACAATATTC CCACTGCTTGGAAAGCATAATAGTTGTTTCATTTTTCTGGTAGGGTTGTTTCTCCATGTATTGCACAACTACTTTCTCAG CCTTGTTTCATAAAAAGCCGCTACATCTTGCAAGAGTGTTTATGGACTGATAGGAACTTACATATCACATGGTTTAGTTA GTTAAGTGAGGGAGTTATCACATAACTAGATAGTTAGTTTGAGGGTTAGTAAGGCTTGTTGCCTATAAATTAGAGAATAG GAATCATCTTTGTATTCAGTTTGGGAATTGGGTTTAGTGAGAGAAGTGGTTCTCTCTTGGGTTAGGGAAGGTGTTTGGTA TCCTTCCTTGTATCTTTTCCCTAATTCCCAATTGAGGATTAGGGTTCTTCTTCAATATACCACTGCTACTTTTCTGGGTT CTATCATTGGTATCAGAGCATCGATTCTGGTGCCCTGGCCAAGAAGATTCATCTACAACAGCATCCATGGCTAGAGGATT CGTGGATTCATTTCCACGTGAGGAAACGAGGGAGATATTTGCTCTTGCAGAAGAATTGCAGAAGGAGTTTACAGAGAGTA GAAGGGAACTAGAGTCAATGAAAAATCGGTGGAGAGAACTTGAAGAGAGGAGGCAGAAGATGGAACAAGAAAGGAGAGAA TCTGAGGCGGCAATGGAGGCGGAGCGAACAGCGGCAGCAGTGGCTTTGCGGAAAGGAACAGAGACCGCAGAGGAAAACTC GATCTCTGAGGTGCAGAAACCCAATCTCAAGGCAGCGGGTGCAATTCTGCTTCAAAGAACAGGGTTGCGTCCCAATCTTG GTTACGAATTGTAGAAATCCAAGGCGCAGAGATTCAGTCTAATAGTTGAAGGAGAAAGAACAGATGGTGCTGTGATCGCA GATTGTGTGGCTAAGGAGAAGAAAATGGAGGAAGAAACAGAAATTGGCTTTCCTCAAGCTTGCAAGGAGGAGAACCCACT TCCACCACCTGATTTAAAGCTGGAGAAGGAGGAAAATGGTTCAGCGGCGACAATAGAGTGTTGACGATCTGGAAACCCAT GCCGGAAATGTCCTACCTTGGTGCCATGAAGGTTGTCACTGGTACCCAGATAGCGGCAGCGACACTGTGGCTCGAGCCAC CATGGAAACTGCCGTACTGTGGTGGTTGATGTTTTGTTGGGAGTCGAGCCGAGGAGGGGGGACGATCTTGCTACACGATA CAAGAACAGAGACAGAGGAACTGTTGGGTCGTGGTATGGAAATGGAGACCCACGCTACTCCGACGGCGAAAACGAGAGAG CAAGTAGCTACATTTTTTGGACGGGGCAAGACAGAACAAGAGTTCAGATTGAGACATCGAAGAGCATGCCACTCCTTCAT TGAACTGAGTCTGGCCCATGAGGTAAGTGGATATGTTACAAGCCCAAAATTGTTTCACCAGTTTTTGCTTACTGTTAGTG TAGAAGGGAAACACGTGTCAGACTTAGAGAATGATAGTCTAAAAGATCAATTTTCTGATGTTGTTGATAGGACACATGTC CTAGCTAGTGATAAGTTTCAGATTGGAGTGATAGTACTGAGCCTAGCCCAAATGCTAGAGCATATTAGTGGCAGAGGAAA GGTGGGTCAAGCTCAAATTAGAGAATGGTCTGAAATGGTAAAAGCAAAGAAATATTTGGACTTTATGGGCCAAACTGAGC AAATTGGTGGTCACATTGCACTCCAGTGTCTTCACACTTTTCAGGTTAAAGTTAGAACTGAGTATGAAAATGGATTGGGG TATATTAATATTAGCTTGGGGTGGCTAGTTTTTGAAGATTCTGCCAGCTTGCTACTTCAAAGGTTAAGGGACCACAGCAG AATTTATTTCAGTTGTTCAAGGGATTGGCCCAACTCATCATACATGGCTGAATTTTTACCAAGGGAGCAAAACTATAGGT TTGAGTGGTATTCAGTTCCAGAACTTCTAATTCATAGGCAAGCAAGTACTACTACGTCTTGTCAATCTAATGCTTCCGTT GAATTAGATGCTAGTTTTCAAAGCTTGGGCTCTCAAAGTGCTGAGTTCACTGTTTTGGTTTGGAGGCAAGAACAGAATTG GAGGTATCAACATATTTGTGATAGTTGGACATTATCACAACTTGAGTCACATGGTAGTAGAGGGACATTATCACAATTTG AGAACTTGTGGGCTTGTTATGGGAGGATGCCTACCCAGTCATTCATAATTGGTTTTGCTTTTGAAGATGCTGCTACCCTG CTTCTTCAACTTGTTCGCAACAGTTGGCTTATCTGTAAAATGTTTCTCCAGCAATGGGACTTAGCAGAGTTCGTTTTAGC AGCCCAGTGCCCATTTTCACCAAGTCATACATGTTTTGGACTCTTTTCTTTAGGCTGTGGGATCCTGGATGAAGCTGTAC TTGTTCCTTTTGGATTGTTTGGATAGTTGTTCCATGATGTAGCTTGTCATTTGTCCTTCTTCTTGAGGACAATGTGAATT TTCAGGGGGGGGAGTATTGATAGGAACTCACATATCACATGGTTTAGTTAGTTAAGTGAGGGAGTTATCACATAATTAGA TAGTTAGTTAGAGGGTTAGTAAGGCTTGTTGCCTATAAATTAGAGAATAGGAATCATCTTTGTATTCAGTTTGGGAATTG GGTTTAGTGAGAGAAGTGGTTCTCTCTTGGGTTAGGGAAGGTGTTTGGTATCCTTCCTTGTATCTTTTCCCTAATTCCCA ATTGGGGATTACGGTTCTTCTTCAATATACCACTGCTAATTTTCTGGGTTCTATCATGGACGTTAGATCTTAACCATATA ATTCTTTCAAGAACCACCCTGTTCTAGAAAACAAATTACATTGGATCCAACTAACAAGTTCCCTAAGGACACTTCTTAAA AAAAACTGCAAATTATTTAATGAAAAGTTCAGGATTTAACACATCCAGAACTTAAAAACTTTAGTTTTCGGTTTAACTTT CTATTTTGATGTTGGGAATGACGATCAAATTTCCAAACATTAATCTGTTTTACTTAGAAGACATTCACCACCATTATGAG TGTATCCCAAGTTGAAGAAAAGAGATGTGCAAGAGTCTTTGGTGAGTGAGAGTGTTATCATTCCTTGTAACACTTGTTGG GGACTGGGTTTTTTGAGTGATACACTATTTAGGGTGGGTTCAAGTTTTTTAAGAAATCTTTTAACCTTTATATGAGATAG TGAATATTTTTGTTGAGACGTTTTCATGGACGTTGACAAAAGTTATTGAACCACGTTAAATAGTGTCTTCCGTCCGTTGT GTTTGCTTGTGATGTTCTTTGTGCTGTGTTCCCATCTCTGATCCTGCCATCATAATATCAAATATCTATAGTTATTGGGC TTTATCCTCCATATGATAACCTCTGCTTACTAGGTTTTGTGTGGCCAAACCATCATGGACAAGATTCTATCATCACTTCT TCAATAAGTGCTACTCCTGCTTTTTCATGAGTACATTCGTTCAAAATTTAGCCCTCTGCTTACTAGGTTTTGTGTGGCCA AACCGTCATAGACAAGATTCTATCGTCGCTTCTTCTATAAGTGTGATAGCACTGGTAAATGCAATGAATATTATTGAACT GAAACTGAGATTACAACCTGGAAATCAATTTGAGAATTGAACCAGGGAATTGGGGAATTATAGGGAAAATTGGGAAATTC GGGAAGAACAGTGAAAACTAGGGTTCCTAGAAATCCCACGATCTCTCTCTGGTTCCTCAACCAGATTCTGAACTCTAATC TTTCAATCCCTTCCTCTGCAAGCTAACTTCCCTTTTATACTATACAGTTGCATACCTGCAACTGGTAACTACCTCTAATC AAGCGCTAATTGTATTCAGTGATCATTTTCATTATACAAGTTCTAATATTTATAATCTAATGTTCATGAATCCTAATTAA TGAAAATAAGGAAAACAGGAATTGAAATCTGTCCTAAATCCTAATAACTATACTGCATCATGCTAAAATACTTCCAACAC TTATTAGTCACACAGTAGCAATTCCAATTGTTGCACCAATGCTTCCTTTCTATGTAATAATAAGAAATGCAGAAATTTTT ATATTCTGTTCTCTATTAATTTTGAATTTTAACAACCTGAAATAACTTGTATTAATAAGTTGATGTTTCTTTGATTCTTT TTCTATTTTGCAGTCATTGATTGTTTTTGCGAAACCCATAAAATTTGCATTATTGTTCACCTTTGGCCACCTGTTAGCAG TTGGAAGGTATATTCAATTTGCCCCTTGTTGACCTGTGATGGTTTTAGAAATTACTTTTTCCAGGCTAGATGCATATTGG TCAAGATAACATTTTTGTCGAGGGTATTAATATTATGGGAATGTCTGTTTAATGTCTATACAACCATTCATAAATTCTCA TTCTTTTCATGATGCACTCATCTTGCGTGCCCTGGCAAAATATATAGAGAAGTGGAGGCAAGTAAATAGCGAACTTGTTG CCTCCAAACCTCTCTACGCCTCCTTGTCCCTCTTCAATGTTGGAGTTCTTTTCTTTTTGATGTCTTTATTGTTGAGGCCA TATACTGTTTTCATTCTCTTTTTCTTCGATGATATAGGCACTGGAATATGCTATTTTCTTTTTGTGTCTCCCAGTGTCGT GGATGTAGTTCAATTAATATACCTTCTAACTTTTTTTTTTGTATATCCTGCAGTACAGCCTTTCTTCTTGGGCCTGCACA ACAATTGCAAATGATGTTAGACCCAGTTCGTGTTTTCGCAACAGCCATATTCCTCGGATGTGTGGTTGTGGCACTTATTT GTGCTCTCTGGGTAAGCCCTGCTCTTTAGATCTCTTTGAAGCTCAACATCTTGAGTTCCTGTTTCTCCCGTATATAACTG GCAATCTTTAATGTTGGCATGAGTTGCAAATTTTTAAGGATGAGAATAGTGAGGAAATTTGAACAGCCATTTCAGCTTTT GTCTATTCGCATTCTGATAATGCTCACTGAGCAATGAACCTGTGTGCATAAAATCAATCAAGCTCTCTCAATTTGTATTA CATCGTTTTGGAAAACTGATCCATTTATCATGTTTTATAGATCCATAGTAAGCTGTTAACGATAATCGCAATCATAATTG AGATTGGTGCCCTTATTTGGTAAGTTTCCAACCGGTCCATTTCCAGATATAAATTGTGACATGAAAACCATTTCTAGAAA TGAAGATCATTTCAAAAGGAATATTCTTCATAGCGTGTCTGAGTTTTACTTGTTTGTAAATCACTAATAGTTCCTAGTTG GTACAGGTACAGTCTGAGTTATATACCTTTTGCTCGAAGAATGGTTTCTGAGTTGATGATCCGATTGTGTGATACAGAAC TTTAAACCAGAAAAAAAATGAAAAATAAATATCCGAAGACGTTACTTTTTGATTTTGTAGACCTCTTTGTGGTCGAGTAG GAATAACTGATGCTGATTATGAAGTTCAGAATTCAGATATTAGTTCTCGTGCCCCATGAAGCTTCCTGTTGACTTTCTGA TGATTCATGCTCATGTTTCTATTCTTTTCCTTTCAATTGAAACAAATATAAATAATGAATTAAAATTTTGTTTAGTTTTT GAAAAGGATACGAAAAGAAAGTAATTGGAATAGTGTTACATGCTTCGGAGGACCTTATTGCAATCATCATTCACAACATT ACTTCCAGTTTAGCTTTGTATTGCTAGTATTTATTAGAAATTGGGAGGCTTATACTCAACCACAAAAACTAGCTTAAGAG TTGAGGTTTGCGCTGCCCTTATAAATGTTATCTATGCTCTATCTCTAGCCAATGTGAGACTTCTAACAACATTGTATTTG CTTCATTACTTGTAGTCCTTTGTTTTACTTTGGGCTTGTATATTGGCCTACTAAGAATTTAGGATT
CDS sequence (LotjaGi1g1v0234100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGAAACTAGGTCAGTTTTTATCAAAAGATAATGAAGAGCAAGAGGAGAGCTTGCTGGGTGAGGACTCAGGTGGTCT CTGCTCCCTCTCTCCAACGCAGAGAATTTTTGGGTTTGCTGCTTGTTTGGTTGCTGGTCTTGCTTGCATGTTACTGTCAT TGATTGTTTTTGCGAAACCCATAAAATTTGCATTATTGTTCACCTTTGGCCACCTGTTAGCAGTTGGAAGTACAGCCTTT CTTCTTGGGCCTGCACAACAATTGCAAATGATGTTAGACCCAGTTCGTGTTTTCGCAACAGCCATATTCCTCGGATGTGT GGTTGTGGCACTTATTTGTGCTCTCTGGGTAAGCCCTGCTCTTTAG
Protein sequence (LotjaGi1g1v0234100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLKLGQFLSKDNEEQEESLLGEDSGGLCSLSPTQRIFGFAACLVAGLACMLLSLIVFAKPIKFALLFTFGHLLAVGSTAF LLGPAQQLQMMLDPVRVFATAIFLGCVVVALICALWVSPAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 118 | 118 | 9.6E-56 | ||
| Phobius | 1 | 35 | 35 | - | – | |
| PANTHER | 1 | 118 | 118 | 9.6E-56 | – | |
| Phobius | 36 | 57 | 22 | - | – | |
| TMHMM | 36 | 58 | 23 | - | – | |
| Pfam | 46 | 117 | 72 | 2.8E-18 | ||
| Phobius | 58 | 62 | 5 | - | – | |
| TMHMM | 63 | 85 | 23 | - | – | |
| Phobius | 63 | 83 | 21 | - | – | |
| Phobius | 84 | 94 | 11 | - | – | |
| TMHMM | 95 | 117 | 23 | - | – | |
| Phobius | 95 | 117 | 23 | - | – | |
| Phobius | 118 | 121 | 4 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi1g1v0234100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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