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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0234100 |
| Transcript ID | LotjaGi1g1v0234100.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vesicle transport protein; TAIR: AT5G24170.1 Got1/Sft2-like vescicle transport protein family; Swiss-Prot: sp|O95562|SFT2B_HUMAN Vesicle transport protein SFT2B; TrEMBL-Plants: tr|B7FHE2|B7FHE2_MEDTR Vesicle transport protein; Found in the gene: LotjaGi1g1v0234100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:55042447..55048377) extracted from Lotus japonicus Gifu genome v1.2.
ATGCTGAAACTAGGTCAGTTTTTATCAAAAGATAATGAAGAGCAAGAGGAGAGCTTGCTGGGTGAGGACTCAGGTGGTCT CTGCTCCCTCTCTCCAACGCAGGTGCTGTCAAAACTTTTTACACAGTTCTAGCTGTTTGAGATTTATTATAACCTAGCCC TTCTAAGTTATAATACTGCTTTTGGTTGTTGATTAAACAGAGAATTTTTGGGTTTGCTGCTTGTTTGGTTGCTGGTCTTG CTTGCATGTTACTGGTGAGACGAATTTATCTTCTCTTTTTATATATATGTTATGTATATATTTTACGTGTCTTCTTATAT GTCGATTTTCGCTAGTTCAAAATTTTAGTAATAAATAAGTTCTAGTAACTTAATCTCATATAATTAACCAATTCAGTAAA TCAATGAGAAAAGGTTCGGTGCAAGTATTTTTGTAGAATGGTGATTTGTTGCACTTTGATGGTATTTCTCCTTTATAGGA TATCTTCTATAGCCTATGCTTTACTAGCACAGTAAATATCAAAGATCGGATTTCTTCTGACATTACATCTGTAAGAGACA ATATTCCCACTGCTTGGAAAGCATAATAGTTGTTTCATTTTTCTGGTAGGGTTGTTTCTCCATGTATTGCACAACTACTT TCTCAGCCTTGTTTCATAAAAAGCCGCTACATCTTGCAAGAGTGTTTATGGACTGATAGGAACTTACATATCACATGGTT TAGTTAGTTAAGTGAGGGAGTTATCACATAACTAGATAGTTAGTTTGAGGGTTAGTAAGGCTTGTTGCCTATAAATTAGA GAATAGGAATCATCTTTGTATTCAGTTTGGGAATTGGGTTTAGTGAGAGAAGTGGTTCTCTCTTGGGTTAGGGAAGGTGT TTGGTATCCTTCCTTGTATCTTTTCCCTAATTCCCAATTGAGGATTAGGGTTCTTCTTCAATATACCACTGCTACTTTTC TGGGTTCTATCATTGGTATCAGAGCATCGATTCTGGTGCCCTGGCCAAGAAGATTCATCTACAACAGCATCCATGGCTAG AGGATTCGTGGATTCATTTCCACGTGAGGAAACGAGGGAGATATTTGCTCTTGCAGAAGAATTGCAGAAGGAGTTTACAG AGAGTAGAAGGGAACTAGAGTCAATGAAAAATCGGTGGAGAGAACTTGAAGAGAGGAGGCAGAAGATGGAACAAGAAAGG AGAGAATCTGAGGCGGCAATGGAGGCGGAGCGAACAGCGGCAGCAGTGGCTTTGCGGAAAGGAACAGAGACCGCAGAGGA AAACTCGATCTCTGAGGTGCAGAAACCCAATCTCAAGGCAGCGGGTGCAATTCTGCTTCAAAGAACAGGGTTGCGTCCCA ATCTTGGTTACGAATTGTAGAAATCCAAGGCGCAGAGATTCAGTCTAATAGTTGAAGGAGAAAGAACAGATGGTGCTGTG ATCGCAGATTGTGTGGCTAAGGAGAAGAAAATGGAGGAAGAAACAGAAATTGGCTTTCCTCAAGCTTGCAAGGAGGAGAA CCCACTTCCACCACCTGATTTAAAGCTGGAGAAGGAGGAAAATGGTTCAGCGGCGACAATAGAGTGTTGACGATCTGGAA ACCCATGCCGGAAATGTCCTACCTTGGTGCCATGAAGGTTGTCACTGGTACCCAGATAGCGGCAGCGACACTGTGGCTCG AGCCACCATGGAAACTGCCGTACTGTGGTGGTTGATGTTTTGTTGGGAGTCGAGCCGAGGAGGGGGGACGATCTTGCTAC ACGATACAAGAACAGAGACAGAGGAACTGTTGGGTCGTGGTATGGAAATGGAGACCCACGCTACTCCGACGGCGAAAACG AGAGAGCAAGTAGCTACATTTTTTGGACGGGGCAAGACAGAACAAGAGTTCAGATTGAGACATCGAAGAGCATGCCACTC CTTCATTGAACTGAGTCTGGCCCATGAGGTAAGTGGATATGTTACAAGCCCAAAATTGTTTCACCAGTTTTTGCTTACTG TTAGTGTAGAAGGGAAACACGTGTCAGACTTAGAGAATGATAGTCTAAAAGATCAATTTTCTGATGTTGTTGATAGGACA CATGTCCTAGCTAGTGATAAGTTTCAGATTGGAGTGATAGTACTGAGCCTAGCCCAAATGCTAGAGCATATTAGTGGCAG AGGAAAGGTGGGTCAAGCTCAAATTAGAGAATGGTCTGAAATGGTAAAAGCAAAGAAATATTTGGACTTTATGGGCCAAA CTGAGCAAATTGGTGGTCACATTGCACTCCAGTGTCTTCACACTTTTCAGGTTAAAGTTAGAACTGAGTATGAAAATGGA TTGGGGTATATTAATATTAGCTTGGGGTGGCTAGTTTTTGAAGATTCTGCCAGCTTGCTACTTCAAAGGTTAAGGGACCA CAGCAGAATTTATTTCAGTTGTTCAAGGGATTGGCCCAACTCATCATACATGGCTGAATTTTTACCAAGGGAGCAAAACT ATAGGTTTGAGTGGTATTCAGTTCCAGAACTTCTAATTCATAGGCAAGCAAGTACTACTACGTCTTGTCAATCTAATGCT TCCGTTGAATTAGATGCTAGTTTTCAAAGCTTGGGCTCTCAAAGTGCTGAGTTCACTGTTTTGGTTTGGAGGCAAGAACA GAATTGGAGGTATCAACATATTTGTGATAGTTGGACATTATCACAACTTGAGTCACATGGTAGTAGAGGGACATTATCAC AATTTGAGAACTTGTGGGCTTGTTATGGGAGGATGCCTACCCAGTCATTCATAATTGGTTTTGCTTTTGAAGATGCTGCT ACCCTGCTTCTTCAACTTGTTCGCAACAGTTGGCTTATCTGTAAAATGTTTCTCCAGCAATGGGACTTAGCAGAGTTCGT TTTAGCAGCCCAGTGCCCATTTTCACCAAGTCATACATGTTTTGGACTCTTTTCTTTAGGCTGTGGGATCCTGGATGAAG CTGTACTTGTTCCTTTTGGATTGTTTGGATAGTTGTTCCATGATGTAGCTTGTCATTTGTCCTTCTTCTTGAGGACAATG TGAATTTTCAGGGGGGGGAGTATTGATAGGAACTCACATATCACATGGTTTAGTTAGTTAAGTGAGGGAGTTATCACATA ATTAGATAGTTAGTTAGAGGGTTAGTAAGGCTTGTTGCCTATAAATTAGAGAATAGGAATCATCTTTGTATTCAGTTTGG GAATTGGGTTTAGTGAGAGAAGTGGTTCTCTCTTGGGTTAGGGAAGGTGTTTGGTATCCTTCCTTGTATCTTTTCCCTAA TTCCCAATTGGGGATTACGGTTCTTCTTCAATATACCACTGCTAATTTTCTGGGTTCTATCATGGACGTTAGATCTTAAC CATATAATTCTTTCAAGAACCACCCTGTTCTAGAAAACAAATTACATTGGATCCAACTAACAAGTTCCCTAAGGACACTT CTTAAAAAAAACTGCAAATTATTTAATGAAAAGTTCAGGATTTAACACATCCAGAACTTAAAAACTTTAGTTTTCGGTTT AACTTTCTATTTTGATGTTGGGAATGACGATCAAATTTCCAAACATTAATCTGTTTTACTTAGAAGACATTCACCACCAT TATGAGTGTATCCCAAGTTGAAGAAAAGAGATGTGCAAGAGTCTTTGGTGAGTGAGAGTGTTATCATTCCTTGTAACACT TGTTGGGGACTGGGTTTTTTGAGTGATACACTATTTAGGGTGGGTTCAAGTTTTTTAAGAAATCTTTTAACCTTTATATG AGATAGTGAATATTTTTGTTGAGACGTTTTCATGGACGTTGACAAAAGTTATTGAACCACGTTAAATAGTGTCTTCCGTC CGTTGTGTTTGCTTGTGATGTTCTTTGTGCTGTGTTCCCATCTCTGATCCTGCCATCATAATATCAAATATCTATAGTTA TTGGGCTTTATCCTCCATATGATAACCTCTGCTTACTAGGTTTTGTGTGGCCAAACCATCATGGACAAGATTCTATCATC ACTTCTTCAATAAGTGCTACTCCTGCTTTTTCATGAGTACATTCGTTCAAAATTTAGCCCTCTGCTTACTAGGTTTTGTG TGGCCAAACCGTCATAGACAAGATTCTATCGTCGCTTCTTCTATAAGTGTGATAGCACTGGTAAATGCAATGAATATTAT TGAACTGAAACTGAGATTACAACCTGGAAATCAATTTGAGAATTGAACCAGGGAATTGGGGAATTATAGGGAAAATTGGG AAATTCGGGAAGAACAGTGAAAACTAGGGTTCCTAGAAATCCCACGATCTCTCTCTGGTTCCTCAACCAGATTCTGAACT CTAATCTTTCAATCCCTTCCTCTGCAAGCTAACTTCCCTTTTATACTATACAGTTGCATACCTGCAACTGGTAACTACCT CTAATCAAGCGCTAATTGTATTCAGTGATCATTTTCATTATACAAGTTCTAATATTTATAATCTAATGTTCATGAATCCT AATTAATGAAAATAAGGAAAACAGGAATTGAAATCTGTCCTAAATCCTAATAACTATACTGCATCATGCTAAAATACTTC CAACACTTATTAGTCACACAGTAGCAATTCCAATTGTTGCACCAATGCTTCCTTTCTATGTAATAATAAGAAATGCAGAA ATTTTTATATTCTGTTCTCTATTAATTTTGAATTTTAACAACCTGAAATAACTTGTATTAATAAGTTGATGTTTCTTTGA TTCTTTTTCTATTTTGCAGTCATTGATTGTTTTTGCGAAACCCATAAAATTTGCATTATTGTTCACCTTTGGCCACCTGT TAGCAGTTGGAAGGTATATTCAATTTGCCCCTTGTTGACCTGTGATGGTTTTAGAAATTACTTTTTCCAGGCTAGATGCA TATTGGTCAAGATAACATTTTTGTCGAGGGTATTAATATTATGGGAATGTCTGTTTAATGTCTATACAACCATTCATAAA TTCTCATTCTTTTCATGATGCACTCATCTTGCGTGCCCTGGCAAAATATATAGAGAAGTGGAGGCAAGTAAATAGCGAAC TTGTTGCCTCCAAACCTCTCTACGCCTCCTTGTCCCTCTTCAATGTTGGAGTTCTTTTCTTTTTGATGTCTTTATTGTTG AGGCCATATACTGTTTTCATTCTCTTTTTCTTCGATGATATAGGCACTGGAATATGCTATTTTCTTTTTGTGTCTCCCAG TGTCGTGGATGTAGTTCAATTAATATACCTTCTAACTTTTTTTTTTGTATATCCTGCAGTACAGCCTTTCTTCTTGGGCC TGCACAACAATTGCAAATGATGTTAGACCCAGTTCGTGTTTTCGCAACAGCCATATTCCTCGGATGTGTGGTTGTGGCAC TTATTTGTGCTCTCTGGGTAAGCCCTGCTCTTTAGATCTCTTTGAAGCTCAACATCTTGAGTTCCTGTTTCTCCCGTATA TAACTGGCAATCTTTAATGTTGGCATGAGTTGCAAATTTTTAAGGATGAGAATAGTGAGGAAATTTGAACAGCCATTTCA GCTTTTGTCTATTCGCATTCTGATAATGCTCACTGAGCAATGAACCTGTGTGCATAAAATCAATCAAGCTCTCTCAATTT GTATTACATCGTTTTGGAAAACTGATCCATTTATCATGTTTTATAGATCCATAGTAAGCTGTTAACGATAATCGCAATCA TAATTGAGATTGGTGCCCTTATTTGGTAAGTTTCCAACCGGTCCATTTCCAGATATAAATTGTGACATGAAAACCATTTC TAGAAATGAAGATCATTTCAAAAGGAATATTCTTCATAGCGTGTCTGAGTTTTACTTGTTTGTAAATCACTAATAGTTCC TAGTTGGTACAGGTACAGTCTGAGTTATATACCTTTTGCTCGAAGAATGGTTTCTGAGTTGATGATCCGATTGTGTGATA CAGAACTTTAA
CDS sequence (LotjaGi1g1v0234100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGAAACTAGGTCAGTTTTTATCAAAAGATAATGAAGAGCAAGAGGAGAGCTTGCTGGGTGAGGACTCAGGTGGTCT CTGCTCCCTCTCTCCAACGCAGTCATTGATTGTTTTTGCGAAACCCATAAAATTTGCATTATTGTTCACCTTTGGCCACC TGTTAGCAGTTGGAAGTACAGCCTTTCTTCTTGGGCCTGCACAACAATTGCAAATGATGTTAGACCCAGTTCGTGTTTTC GCAACAGCCATATTCCTCGGATGTGTGGTTGTGGCACTTATTTGTGCTCTCTGGATCCATAGTAAGCTGTTAACGATAAT CGCAATCATAATTGAGATTGGTGCCCTTATTTGGTACAGTCTGAGTTATATACCTTTTGCTCGAAGAATGGTTTCTGAGT TGATGATCCGATTGTGTGATACAGAACTTTAA
Protein sequence (LotjaGi1g1v0234100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLKLGQFLSKDNEEQEESLLGEDSGGLCSLSPTQSLIVFAKPIKFALLFTFGHLLAVGSTAFLLGPAQQLQMMLDPVRVF ATAIFLGCVVVALICALWIHSKLLTIIAIIIEIGALIWYSLSYIPFARRMVSELMIRLCDTEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 143 | 143 | 3.8E-63 | ||
| PANTHER | 1 | 143 | 143 | 3.8E-63 | – | |
| Phobius | 1 | 44 | 44 | - | – | |
| Pfam | 27 | 134 | 108 | 8.5E-33 | ||
| Phobius | 45 | 65 | 21 | - | – | |
| TMHMM | 45 | 67 | 23 | - | – | |
| Phobius | 66 | 76 | 11 | - | – | |
| Phobius | 77 | 99 | 23 | - | – | |
| TMHMM | 79 | 101 | 23 | - | – | |
| Phobius | 100 | 104 | 5 | - | – | |
| Phobius | 105 | 127 | 23 | - | – | |
| TMHMM | 105 | 127 | 23 | - | – | |
| Phobius | 128 | 143 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi1g1v0234100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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