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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0234300 |
| Transcript ID | LotjaGi1g1v0234300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT4G26340.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q8H1R7|FDL27_ARATH F-box/FBD/LRR-repeat protein At4g26340; TrEMBL-Plants: tr|I3SQ21|I3SQ21_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0234300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:55091132..55095845) extracted from Lotus japonicus Gifu genome v1.2.
TATAAAACAATATTTCGTTTTGGAAACTTTTGAATTAGGGCGGTGTGGGTCGCAAAGCTTTTGGAGACCCTTCCTCGTTT CACCTTCACCTTTTCTATTGACAAACCCTATTCATTTACCATTCATCACCATCAGTCCCCACTTTCCGCACGACCCAAAC CACCGTCACCATCTTATCGCCGCCGTGCTTCCGCTTATGTTAATTTGAAGTCCGGCGAACATGGTTGACAGAATTAGCAT GTTATCAGATGAAGTCCTCTGTCACATTCTCTCCTTTCTCTCAACTGAACAAGCTGTTGCCACAAGTGTTCTCTCAAAGA GATGGAAGCACCTCTGGATCTCAGTATCCGTTCTCGACTACGACGACGAAATCTATCTCAGAAACAACAGACCCCATTCT TGCTTTGAAAGGTTCGTATACGCAACCATTCTACCCAGAGATGCTCAACAACCCATCACAAGGTTGCGTCTTATATACGG GCGTTATGGTTCTGAACTTTCCGATACCGATGTCAGTCATGGCCGTTCGAATGCTGATATCATTGTTTGGGTAAAAACGG TTATACGACGCGGAATTCAGAACCTTGACATCCAGATACATCCTCAAAATTATACTATTAGTTTGAGCAGCTGCATTTTC AGTTGCCAAACCCTTGTTGTTCTCAAGTTGTCAGGGTTATCTCTCAATGTGTCTTCTTCAGTTGAGCTTCCCTCACTCAA ATCCCTACATTTGGATCTTGTTAAATTTGTGGATCCTAATTATCTTATGGAGCTTCTTTATGGCTGTCCAATGCTTGAGG ATTTGAAGGCAGAATGGATACATTATGCTGTTGAGGAGTATGATGTTAAGGAAGAGTTTAAATACTTACCCAAGTTGGTC AGGGTACATCTACGTTTTATTTCTATGTATGATATTGAAATTCTTCTGAAAGCAATATGTAATGTGGAGTTTTTGAGTAT CAAACAGGTCCGATGTGAAAATGTGTTTAGTTTGATGTTTTTTGGTCTCGTTTTTACATTATATCACCTATATTTCTCAT AATCTGCCTTTTTATAACTGTTGCAGTTGCGGGATGTTGATGAGGTTCCTGAATTTTCTCATTTAAGATATTTGTCCCTC TCCTTGGATATTCATAGCTGGCATTCGGTGCTTTTGATGCTCAAGAGTTGCCCCAACCTTCAGAGTTTTAAACTTAATTT GCGTCGATCTTTTGAGGCTGTGGATGTTCTACCTTACACTCACTTTGTTGTTCCTGAATGCCTTACATCACACCTTAAGA AGTGCTATCTCAAATATTACCGAGGCACAGAATGTGACCTACGATTTGCAAAATATATTATGCAGAGTTCAACATCTTTA CAGTCCATGAAAGTTCTTAGTGTTTCACCTAATTCATTTGAAGCGCTAAAGGACTTAGCTTTGTTCCCAAGGAAATCCAC ATCATGTGAACTTTCTTTTAATTTATATGGTTTTCAGTAGCTGTAAACTCTTCCTAGCTGAAAGCATGTGACATTTGTTA ATATAATGGAAACACGGGATTTGTAGGACATGAACTGTGTAATTGTGTATTGTGTCTCTTTGTGTACTCATCACTGGTTC TTGTCTAATGTGCTTGACTACCTGATGTGAGGGTGTAAATGGAAATCACTATTTCTTATGCCGGTGATTCATTGTTTTCA CTCTTCCAAAAGGATGTTTTTTCTTCTTTCTTATGATAGTATTCTGACATACTTCTTGGTTAGTAGCCAATCATGTTATA AGATACCTGCATGATTATTTGACTTTATAACTATTGCAGTTGTCCCTCTCCTTGGATATTCATAGCTGGCATTTAGTGTT TTTGATGCTCAAGAATTGCCCCAAGCTTTAGAGTTTTAAACATGATTTGCATCTATCTTTTGAGGCCGGGATATTCTACC TTACCCTCATTTTGTTGTTCCTGAATGCCTTACATCACACTTGAAGATTTGCTATCTCAAATATTACCGAGGCACAAAAA GTGATCTACAATTTGCATCTTTAGATTCCATTAAAATTCGTAGTTTTCACCTAATCCACTTGAAGTGATAAAGGAGTTAG CTTTGTGCTCAAGGAAATTTGTATCATGTGAACTTTCATTTAGTTAGATGCAAACTAAAAGATTAGAAAGCTGAAGATAT ATGAAAATTTGTAAGAAATTATGGCTTCCTTTATTATGAATTATGATATTTGTGTTATCTTGTTATTGACTTTGCGTTTT GTATAATTTGATTACTAGGTACCAAACTGAGTGTATGTATAATCTTGTGTTGGTTCTGGTTTTCCCTGCTTCCAGCTGAT CTTGCTTTACTGTTATCACTGCTTCTGGCAGCTTTTAAGGCCTCCCAATCATCATCAACCCCATCAAGCAAAGGTTGCTC AACTTCAGATGTTAATTTCTGTTTCTTTTCTATCCCATCGTTGAGAGTATCTACTTCATCTGCTGTATTTAAATCCATTT CCTCTTTTCCCTATATGGAGCTTCCATCGGCAGTCCCAGTGTCCCAAGTTCAGCATCTAATTTCTGTCTTTTTTACACTT AGTGTTGGCTACGGAGCCAAAATTTGAGTCGATTTCGGTATCGACGCTAATTTTAAATCAAGCTTTTTTGTAGTGTTTGA TGAGAAGGGGGTGGCGGATTATTAACCTGATTCTGATTTAGAGAGTTCTTTATTTAGAGAGTTTTTGTAATGTGCATGCT GGGTGTTATTATCGGTGGTGCTTATTTGTTATTTTCTTTGTTGAATTCGACTTTTGTAGATGGTGTTGTGCCAAGGGCTA AGATGAACCAAGCACTATCTCAATGATGAAATAGGCCCTTGTTGCAGGCTGTACCATGCTTTTACTAAAGATAGAGCCTA TACTATCATTCTTGTCTTAATGGGAAGCACATATCAGAAATAACTGAATTTATGTGTCCTGGCATCAAACTGACATTGCA ATCCACATTTATTTTGTCATTAGGGAAACTGAGTTTATTCCATCAAAATCACTCTTGATTATGCCATGTGCATGTTTATT GTGCTTATGAATAACTCCAGTAAAGTAAATTATTCCATTTTTTATATATTCTTCCAATCGCTCTTCCTTCCCTTTCTTTT TAATGCTTAGTTTTTTTTCAGGGTTGGGTTCAATGACATGGTGTGTGTACTCTAACATTCTGCACTTTTCTGGGATAGAG TTGGAGGAGTGCTTTGGTTGACTCTTGCAGGTGTTACAACGTTCTTTTCAGATAACCTTCTATAGTGGTCTTACAACATA TATATATATATATATATATATATATATATATATGTTTTAGGTGAATATCCAGCCACTTTGTTTTCCTGCTGTGAATTATA AGAACAATAGTCACGTTTTTAACAGGATTATCATTATTTTCGAGCACAAAATCATCACACTCTACTTTTTCAATGTCTGA ATTTTCATATGTATTTCCTTAATTCATTACCATTTTGTGTAATGAAATGAAAAGCATTCATTCTCAATTCAAATTATGCT ATTAAGTATTAAGGTTCCAAAAGTTGAAAGTGTCACGTTTTCCTTTTCAAAAGAAGAGAACTTCTATCTTTGAACAAAAG CAATGTCTTTTGAAAAGAGAAAATCTTCAAGTGCTTCATTATTTGTTAGAAATGAATAGTTAGAGAGGACCTGTACGGCT GTACTGCATACAAACACAAGCTAGCACTTATTAGTCACCTACAGAATTTTTTTTAATTTTTGGTGCTTTCAGTGGATAAA CACTAGCACATAAAAGTTTTATCAGTTAGTGTTTGTTGTCCATTAATTAGTTGGTATTAAAGTGCGTGATTGTATTTATG AGGTTATGGCTTTCCTTTGTGTGTGTGTACTCATCACATTATTATTAGACATCAAAATATGATTTTTTCCCTTTCTTTTC CCTTAATTTAGTTTCTTTTTATGATTCTCTTTCTTATGTTAGTTCTGCTTGGTACTCATAATGTTTTTTTCTTTTCTTTT CAATGCAGTGGTAGTGATGATCAGCTTTGAACATTCTGCCATTGTGTGGTCAATGTAGGGAATGCCATTTAGGGTGGAAA GACTTGGTTATTGTTGTTGTTCAAGACTCTGAGTGATTGTTGTTCATGGTGTTATAGGAGAGTGATGATATTCTGCTGTC TATGTGTGCTTTTGTAGTTTTCAACTTATCCTTTTATAGTTGCACTTTAGGTTAAGATATATTGTAGGCTTGGCTTAATC GCACTTTTGGTCCCCCACGAATGCTATATGTGTCATCGGGGTCCCTAAAGTTCAAAAATCCCATTAGGCATCCCCAATGT TAACCTTTGTTAACAACTTTGGTCCCTCCTCTCTTTTCCATCCAAAAACTAACGATTTTGGGGACCAAAAGTGCAAATGA ACCAAAAAACAAATAAAAAAATAAAAAATTAAAATCCAGAAAACACTTTTAATCTTCCTCTTCCTCCTTTATCATCTTCA TCATCTTCAAACCCAGATGTGAGATTGACACAAAACATATTCTCTCATAGTCATACCTCCCTTCACCCACCACTCATCCA TTTCCTTCCTCACCCACCATCACATAAAACCCACATAATGAAGAACAAACCCAAGAAACACACATGGAAGAAGAAATTGG AAAACATGGGTATTGATTGAAAAGTTTTGATTTTTCTTCCAGCAGAGGCATAAAGCCAAAGATGCAGAACGAAG
CDS sequence (LotjaGi1g1v0234300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGACAGAATTAGCATGTTATCAGATGAAGTCCTCTGTCACATTCTCTCCTTTCTCTCAACTGAACAAGCTGTTGC CACAAGTGTTCTCTCAAAGAGATGGAAGCACCTCTGGATCTCAGTATCCGTTCTCGACTACGACGACGAAATCTATCTCA GAAACAACAGACCCCATTCTTGCTTTGAAAGGTTCGTATACGCAACCATTCTACCCAGAGATGCTCAACAACCCATCACA AGGTTGCGTCTTATATACGGGCGTTATGGTTCTGAACTTTCCGATACCGATGTCAGTCATGGCCGTTCGAATGCTGATAT CATTGTTTGGGTAAAAACGGTTATACGACGCGGAATTCAGAACCTTGACATCCAGATACATCCTCAAAATTATACTATTA GTTTGAGCAGCTGCATTTTCAGTTGCCAAACCCTTGTTGTTCTCAAGTTGTCAGGGTTATCTCTCAATGTGTCTTCTTCA GTTGAGCTTCCCTCACTCAAATCCCTACATTTGGATCTTGTTAAATTTGTGGATCCTAATTATCTTATGGAGCTTCTTTA TGGCTGTCCAATGCTTGAGGATTTGAAGGCAGAATGGATACATTATGCTGTTGAGGAGTATGATGTTAAGGAAGAGTTTA AATACTTACCCAAGTTGGTCAGGGTACATCTACGTTTTATTTCTATGTATGATATTGAAATTCTTCTGAAAGCAATATGT AATGTGGAGTTTTTGAGTATCAAACAGTTGCGGGATGTTGATGAGGTTCCTGAATTTTCTCATTTAAGATATTTGTCCCT CTCCTTGGATATTCATAGCTGGCATTCGGTGCTTTTGATGCTCAAGAGTTGCCCCAACCTTCAGAGTTTTAAACTTAATT TGCGTCGATCTTTTGAGGCTGTGGATGTTCTACCTTACACTCACTTTGTTGTTCCTGAATGCCTTACATCACACCTTAAG AAGTGCTATCTCAAATATTACCGAGGCACAGAATGTGACCTACGATTTGCAAAATATATTATGCAGAGTTCAACATCTTT ACAGTCCATGAAAGTTCTTAGTGTTTCACCTAATTCATTTGAAGCGCTAAAGGACTTAGCTTTGTTCCCAAGGAAATCCA CATCATGTACCAAACTGAGTGTATGTATAATCTTGTGTTGGTTCTGGTTTTCCCTGCTTCCAGCTGATCTTGCTTTACTG TTATCACTGCTTCTGGCAGCTTTTAAGGCCTCCCAATCATCATCAACCCCATCAAGCAAAGGGTTGGGTTCAATGACATG GTGTGTGTACTCTAACATTCTGCACTTTTCTGGGATAGAGTTGGAGGAGTGCTTTGGTTGA
Protein sequence (LotjaGi1g1v0234300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVDRISMLSDEVLCHILSFLSTEQAVATSVLSKRWKHLWISVSVLDYDDEIYLRNNRPHSCFERFVYATILPRDAQQPIT RLRLIYGRYGSELSDTDVSHGRSNADIIVWVKTVIRRGIQNLDIQIHPQNYTISLSSCIFSCQTLVVLKLSGLSLNVSSS VELPSLKSLHLDLVKFVDPNYLMELLYGCPMLEDLKAEWIHYAVEEYDVKEEFKYLPKLVRVHLRFISMYDIEILLKAIC NVEFLSIKQLRDVDEVPEFSHLRYLSLSLDIHSWHSVLLMLKSCPNLQSFKLNLRRSFEAVDVLPYTHFVVPECLTSHLK KCYLKYYRGTECDLRFAKYIMQSSTSLQSMKVLSVSPNSFEALKDLALFPRKSTSCTKLSVCIILCWFWFSLLPADLALL LSLLLAAFKASQSSSTPSSKGLGSMTWCVYSNILHFSGIELEECFG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 386 | 386 | - | – | |
| PANTHER | 2 | 378 | 377 | 1.3E-75 | – | |
| PANTHER | 2 | 378 | 377 | 1.3E-75 | – | |
| Gene3D | 3 | 304 | 302 | 4.5E-29 | ||
| SUPERFAMILY | 3 | 45 | 43 | 5.23E-11 | ||
| Pfam | 4 | 41 | 38 | 7.1E-7 | ||
| SUPERFAMILY | 119 | 292 | 174 | 3.66E-13 | – | |
| Pfam | 165 | 190 | 26 | 4.7E-5 | ||
| Pfam | 311 | 351 | 41 | 3.4E-12 | ||
| SMART | 313 | 382 | 70 | 7.4E-5 | ||
| Phobius | 387 | 408 | 22 | - | – | |
| Phobius | 409 | 446 | 38 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0234300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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