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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0240800 |
| Transcript ID | LotjaGi1g1v0240800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | High mobility group B-like protein; TAIR: AT1G76110.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9SGS2|HMGB9_ARATH High mobility group B protein 9; TrEMBL-Plants: tr|A0A151TCP3|A0A151TCP3_CAJCA AT-rich interactive domain-containing protein 2; Found in the gene: LotjaGi1g1v0240800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:57434305..57438441) extracted from Lotus japonicus Gifu genome v1.2.
ATTTCTAGTAGTTTAGTATAGTAATAAATATTTAATAAATATTAAATAATACAAGGCCTTAACTTAGGACTTTGAACCAA GGTTAATGGCAGAAATAAAGAGGCTTCATCTGCAACGTATTGGTTCCCCCACACGCGGCAAACCATCTTCTTAATTGCTT TGAGTATCTCGAAATTCTCTTTCCTTTTTCTTCTTCCTCCTCCTCTATATATTTACTACTCTTCCTCACATCAAACACAC ACTCCCTCCCTTTCATCTCTCAACTTTGTTTCAGTTCTTCCCCCTTTTTTTGTGCTCTCCTCAGAATGTCATCGGCGGCG GCGGCGAGAACCACCGGAAGAGGCGGTGATGACGACAAGTTCTACCCTCCTCCGCTCACCTCTCATGAGGACATCGTCAA TGATGCTAAGCTCTTCTTGGACACTCTCAGGAAATTTCACTTTGTCATGGGTTCCAAGTACATGTAAGCTTCCATTTCTT CATTTCTCTGATAGTTGGAATTTTGCTTCGTATTAAGATCATCACTGCACTGTATGGATATGGATAATGGATATGTGATT TTGATTTTGTTGAGTTTAGCTTTTTCTGATATCTGTTCAGCCTATTTGTTTAGCTTTTGTGGTTTCAATTCGTGAGAATT TAGTTTTTTTTTGAAAAGTTCTGTGATAATTATACTTGGACCATTTTACCCTCATCATCTTGTCCGGGATTCCTGTGATT GGAGGGAGCAGGATGGATTTTCACACCCTTTACGTGGAGGTTACCAGGATGAGCGGTGATGAGAAGGTGGGCTCCATTGT CCACTCAGATTTCATATTTTATTTTATTTTATTTATGAAATAAAAAATAAACAATTTGTGGTTTGTGGATGATGCATGTT TTGAAATACAGGTGGTTGCTGAGAAGAAATGGAGGGAGGTGGGTAGTGTGTTCAATTTCTCTCTTACCACCACAAGTGTT TCTTATGTGCTCAAGAAGCACTATTGGAATCTCCTCTACGATTTCGAACAAGTTCACTTCTTTAAGGTTCGGGGTCCTAT TACTTCTCCTGCAGGTACTATACTGAATTCATTCACTCTCTATTTTATGAAAATTGATTCCCTGCAGGGAATGCATCGCT ACATTCACGCAGTCACTGAAGTTGAGTCAATCTGTGCTGATCCAATTAGACGACTTAAATTTTAAGACATGTCAACCTAT CTCAGTTATAGGGTCCATTTGTGTTTTTCTTTTTTCTTATGTTGTAACAGTTTATTTTCTTTTTGTTTTATTCATTGGCA TATGATGAAACTACTTAAATGTAAATGAATTACCCAATTTTATTGCATTGCAGATGCACTTTATGGTAGCAACTCCTCGG GGAAACCTGATTTCGCTCTTGTGAAGTATGCACCTAAGCATGCAAACAATGACCCTGAATCCAATGTTGAAGGTACGTGA TTGAAAAATCTAAAGTCAGATATGAATAGAGTGAATACTCAATTTCTACAGTGAAAGTGCAAGTACTGTCCCGTCAACTT AGTCTCTAGAGAGGGGAATACCTCCGACTGTCTATGATTGTGTTATAGTTCAGACTAACTGACCGATCCGATATTTGACA CAATGTGGACAACAAGAATATTTTGTTCCTATAACGACTAATTTGTCAAGATGCTTACACTTTCACAATAAAAATTGACC AATCAATTGGAATTGTTATTAGTAACATGAAGTGTAAGTTGGAATTGTTTTTTATGCTGAATTGCCGCTAAGGGATACAC CCGTTATGAAGAGGAAACAATTAAAGGAAAATTTGATTAAGGCTATTTAGTTTATGTGAAGCTGGGTTCATAGGTTCTCA AAGGGGTGATTTTCCATCTTGAGGAAACAGTTCCTCCTCCATCATCGATTCTGCAGGATGTCGGAGCCATTGTATCGTTC AATCTCAAAGCTCGCCATTCTGGCCGGAGAAGGAGGAACATGAGAAGGTGGGACCGTGATTACCCCAAGCCTAATAGGAA TGGCTATAACTTCTTTTTTGCTGAAAAGCACACCAAGCTGAAAGAACTCTACCCAAGTAGAGAAAGGGAGTTTACCAAAA TGATTGGCCAGCCAAGGAACAATCTTAGCTCTGATGAAAAAATGGTAATAAAATGGTCATTTTGTTATGTTTATTGAATA TTCACTCATAAAATCTATAATACTCATGAGTTCTAAATGATGCAGGTTTACCAGAACATTGGGGGTGATAGACAAGGAAA GGTATCAGAGAGAATTGGCCGAGTACAAGGAGAAAATGAAGCTTTGGCAACCAGAAGAGGTTGAACGTCCTTAGTAATTT TATGGCTGAGGAAAGAGAGAGTGGCTGGGACTGGAGTTGTTATAATCTGAATACTTTTTAAAGTTCCTATATTGTTGTTG TGGATAATGATCCATTGGACTAAACTATGTAAAACTATTTTGCTTTTTGCTTTTTTTTTTGAAAACTATCGTCGTTTATC ACCGGGAACCAAACCCATCGTTTTGTTTAATTAATCAACTGTTTTTCCGATTAGGTCCATATCAATGGCAATATGGCATT GGTTTGACCTCTTTGCTATACATATTTTTAAAATCAATATGGGTTATAGAAGTTACTTGTAGGGGATAAAGAAGATATAG CGGGGTCCACATAGTTTACCTCATCTGAAATGTTGTGTCATCTTATTTGTTTTAACGTGTTAATATGGTGAACTATGTGG TACCCATAAATTCAATCAGAATTCAGGAAGGATGCTCGGACCAATGGCCATGGTTGTAAAGCTTTGATGAATCTTTTCCC GTTAAATCTACTTACTCTTTTTTGCAGGATGTAGGCGATGAAGAACCAAACCAATTATTTATTTCAATTTGGGAAGTTCA TGTTCTTCAAATGTCAAAGCATTTGCTTGGCATTTGATTTCGGGTCGAATTCCAAGTAAGGGTAACCTAAGTAAGTGGCA TGTGATTCAGAACCCTGAATGCATTTTGCCCCTTCTGCAACTGGGTGTAGGAAACAAGTTTGCACCTGCTGTTTTTGTGT CCAGTTCCCTGGACAAGGCAAAAACAATGCACAAAGAAAAGGAGAGTTAACAATTTGGTTTGCTTGCACTTGAATGCTGT GGCCAGCACACAATGAGGTTGTTTTTTAGAACGACAAGGTGGACCAGGTACAAATTTTGGAGCTGATTCAATTGCGTTCA AGGAATTGGGCTAGAGTAAAATTGGGTGGCTTTTATAATACACTCTTTGAATGGAAGTCCAATCCGGTTGTATGTTTTGC ATTCTCTGTAACTGATTTATTTTTTATTTTTTATGCAGAGCTTGGGGGTCCAATTATGTTTAGAATGAATGCTTGGAATT TCTGTGGGTGGGTCCTGAATTTTGGTGGTCTGGAGCAACCCATCAATCGCTTGGCTCTTTACTGCATAAATTGGATGGGC TGCTACCATGATGCTGAAATTGTAAAGGGAAAATGAGCTGTTTACTTAACTTGGTCAATGGTTTGATAAATTATCATGAT ATTTGGAGATTTGCATTAAGTGTGTTACACTATGCGCTAGGAACCAGGTTTGTTCATAACCCAAACGCACTATGTAATAC AACATTACTTGGCGTATTAGAGTTTTTTTATTTTCTTTTCAAAGGATCATAATCCATTCAAAACCCAAAGGTTGCCGAAC GACACTTATAACATGCGAGTATAAATCTCAACGAGTGATATCGCAATGCAACACATAAGAAATTACAGGAACAAGCATGC ACACTCAAATAACAAAGGTGAACATCAACTAAAAAAATGATGTAAAACCCTAAGCGTCATGTACGAAAGCCACTAAACCT CCAAAGTAGCATAGATGTCTTCAAATTTAAACAACGCTCCGTTCTAACAACTCTTCGATTCTGCCGGAGTTGCAATTGTG CGGCTATCAAAGAAGTTCAAACGTGGCTTCTGGAGCATCAATGAGGACAAACCAACACCTCTGAAATTAAGGAGAAGTAG GGAAGCTTTTGCAGGAGCAGAAACAAGGCAGAAAAGGTTGAAGCAACTGAGACAGTGATGAAACAACAGACCAAAGGAGA GGGAGGTGGACATGAGACATGAAGCGATGAAAAGTGGTGAGATTGCAAACCGTGCAG
CDS sequence (LotjaGi1g1v0240800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCATCGGCGGCGGCGGCGAGAACCACCGGAAGAGGCGGTGATGACGACAAGTTCTACCCTCCTCCGCTCACCTCTCA TGAGGACATCGTCAATGATGCTAAGCTCTTCTTGGACACTCTCAGGAAATTTCACTTTGTCATGGGTTCCAAGTACATGA TGGATTTTCACACCCTTTACGTGGAGGTTACCAGGATGAGCGGTGATGAGAAGGTGGTTGCTGAGAAGAAATGGAGGGAG GTGGGTAGTGTGTTCAATTTCTCTCTTACCACCACAAGTGTTTCTTATGTGCTCAAGAAGCACTATTGGAATCTCCTCTA CGATTTCGAACAAGTTCACTTCTTTAAGGTTCGGGGTCCTATTACTTCTCCTGCAGATGCACTTTATGGTAGCAACTCCT CGGGGAAACCTGATTTCGCTCTTGTGAAGTATGCACCTAAGCATGCAAACAATGACCCTGAATCCAATGTTGAAGGTACG TGA
Protein sequence (LotjaGi1g1v0240800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSAAAARTTGRGGDDDKFYPPPLTSHEDIVNDAKLFLDTLRKFHFVMGSKYMMDFHTLYVEVTRMSGDEKVVAEKKWRE VGSVFNFSLTTTSVSYVLKKHYWNLLYDFEQVHFFKVRGPITSPADALYGSNSSGKPDFALVKYAPKHANNDPESNVEGT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| PANTHER | 15 | 144 | 130 | 6.1E-50 | – | |
| PANTHER | 15 | 144 | 130 | 6.1E-50 | – | |
| ProSiteProfiles | 20 | 114 | 95 | 13.773 | ||
| Gene3D | 24 | 126 | 103 | 1.1E-14 | ||
| SUPERFAMILY | 26 | 117 | 92 | 2.75E-23 | ||
| SMART | 28 | 110 | 83 | 1.5E-13 | – | |
| SMART | 32 | 115 | 84 | 3.8E-15 | ||
| CDD | 33 | 110 | 78 | 1.19677E-29 | – | |
| Pfam | 35 | 110 | 76 | 9.8E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0240800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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