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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0246800 |
| Transcript ID | LotjaGi1g1v0246800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heavy-metal-associated domain-containing family protein; TAIR: AT4G08570.1 Heavy metal transport/detoxification superfamily protein; Swiss-Prot: sp|O81464|HIP24_ARATH Heavy metal-associated isoprenylated plant protein 24; TrEMBL-Plants: tr|A0A0B2QTK7|A0A0B2QTK7_GLYSO Uncharacterized protein; Found in the gene: LotjaGi1g1v0246800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:59344316..59346417) extracted from Lotus japonicus Gifu genome v1.2.
GGTTGGGGTTGTGTGTCTAGATCTCTCCACTCACTCTCTCTCTTTCTCTTTCTATAAATATATAAAGGTCTAATTTGTTG ATCAGTTGAGACTTGAGAGCAAACACCATATTGAACTGACGCAAGAAGACACAGAATAATATGGGAGTGCAAGGGACTTT GGAATACTTGTCTGATTTACTCAAAAGCACCAAAAAGAAGAAAAAGAAGCAAACCCAAACAGTAGCTCTCAAAATCAGAA TGGATTGTGAAGGCTGTGCACGCAAGGTTAAGCATGTCCTTTCCGGCGTTAAAGGTACTTCTTTTTCCTTCTTCTTCTTT TTCTCTCATTTAAAGGGTGCTTTATGTATCTACTTCTCTCCACGAATTGCAATCCCACAAGCAGAAACTTAGGAGATTGA GTTGTACCAGAGACAGCTTGAGAATTCATTTATCCGAAGAAGATATGTATAGTCCACTGAATAGTAAAATCCCCTCTGAG ATATCTCACTTAGCGGCAGTTTTGACTGAAACAAAACTTTGCGGATGTTACAAACTGCTGCTGTTTATCTACTCGCTCTT TAATTATGTTCCAACTCATATAATGTGATAAGAGAGACGAGTCATGTAAACCAAGTTTTAGGTTGTTTGATAGAGGAAAA AAGTAAGAGAAAAGAAAAAAAAAAAGAAAAAGAAAGGAACAGAAAAGAAAGAAAAGAGAGTAGAAAATTGAATGACTTTT AGGTTGTTTGATAGAAGAGAAAATGAAATGAAAATTAAGAGAAAAGAAAAGTGCATGTTTGTTAAAATTACATAAATATT TTTATTTAAAAAATTAAATAATGATAATGATTTTTTTAACAAAAAATATAATTTTAAAAAATGATATTAGAGATGTTTAT CATTTTCTATTATTGACATTTATTATTATTTTATTATTTATATAAAGAATTCCAAAATTGTAAAATAAAGGATATATTGG TCAAATCAATAAAACACTCCTTTATCTTCATGTTTTCTCACCATATAAAGGCGAAAGTAGTTTGTGAGAGTCTCATTTGG TTTAACATTTTCTTCACACCTTTTCTCTTGAACAAATTAAATGAGAGAAATTAAGTACCTTAAAAAATGTGTTTTCATTG TTATTTTCTCTTTATTTTCTAGTCTTTCAAACAAGCTTTGCACCTTGTGCAATCTGTGTCCCAACGGTTCATTAAACTTA TCTTTAGCAGTGTTAACGAATGATTAGTGTTCCCAACTTTTAGGAGACACCCACAACGCTTACGGTTCGTACGTGTCAAT GTTCAAGAAACTTTAATTAGCTGTATAGAGTGATCACTCATGTACATAAACTTTAAAAAGGCACTCACACAACACTTATC ATTTGTAGCGGTTTGTGACCATCACAAACTACGAATTTCTCTAATTATTTATAATTCTACAATTTGTGATAGTAAAAAAT TATCACAAGCTAATCAGAGGTTTAGGTGTATGAGCGGTTCACGGAAGTTTAGCGGTATATATGATAATAATTAATTGATA TATTTGTAGTGTGCACTTTGTTTTTTTATTGGAAATTAAAAAGTTAAATCTGAACAGGAGCTAAATCTGTGGATGTGGAC TTAAAGCAGCAGAAAGCAACCGTGACCGGATATGTTGAGCCAAAGAAAGTGCTGAAGGCTGCTCAGTCCACAAAGAAGAA GGTTGAGCTTTGGCCTTATGTTCCTTACACCATGGTTGCTCACCCATATGTTTCTCAGGCCTATGATAAGAAGGCACCTC CTAATATGGTTAGAAAGGTTGCTGACACTGGCAAAGTATCAGAGAGCATCGTGGACGATAGCTACACACAAATGTTCAGC GATGAGAACCCAAATGCCTGCTACATCATGTAATTTGTATTTCTATATTATGTAGATTAATTAATTATATGCATAATAGA TAGATAAGAATAATTAAGATCGATGTCACTTTTTGCATGGTACAACTAACTGACTAAGACTATATATGCTGATTGATCGT TCTCTCTTGCGTCAAAATAGATAGATAAGAATATATATATATATATATATATATATATGTCGCCGCAGTCCCGGAATAAT AGCTTAAGTGGTAAGAGCTAGG
CDS sequence (LotjaGi1g1v0246800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGTGCAAGGGACTTTGGAATACTTGTCTGATTTACTCAAAAGCACCAAAAAGAAGAAAAAGAAGCAAACCCAAAC AGTAGCTCTCAAAATCAGAATGGATTGTGAAGGCTGTGCACGCAAGGTTAAGCATGTCCTTTCCGGCGTTAAAGGAGCTA AATCTGTGGATGTGGACTTAAAGCAGCAGAAAGCAACCGTGACCGGATATGTTGAGCCAAAGAAAGTGCTGAAGGCTGCT CAGTCCACAAAGAAGAAGGTTGAGCTTTGGCCTTATGTTCCTTACACCATGGTTGCTCACCCATATGTTTCTCAGGCCTA TGATAAGAAGGCACCTCCTAATATGGTTAGAAAGGTTGCTGACACTGGCAAAGTATCAGAGAGCATCGTGGACGATAGCT ACACACAAATGTTCAGCGATGAGAACCCAAATGCCTGCTACATCATGTAA
Protein sequence (LotjaGi1g1v0246800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVQGTLEYLSDLLKSTKKKKKKQTQTVALKIRMDCEGCARKVKHVLSGVKGAKSVDVDLKQQKATVTGYVEPKKVLKAA QSTKKKVELWPYVPYTMVAHPYVSQAYDKKAPPNMVRKVADTGKVSESIVDDSYTQMFSDENPNACYIM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 149 | 147 | 6.5E-84 | – | |
| PANTHER | 3 | 149 | 147 | 6.5E-84 | – | |
| Gene3D | 13 | 91 | 79 | 1.0E-18 | – | |
| SUPERFAMILY | 25 | 91 | 67 | 1.83E-16 | ||
| Pfam | 32 | 85 | 54 | 8.4E-15 | ||
| CDD | 34 | 88 | 55 | 6.84047E-15 | ||
| ProSiteProfiles | 34 | 89 | 56 | 11.613 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi1g1v0246800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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