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LotjaGi1g1v0248400.2

Overview

Field Value
Gene ID LotjaGi1g1v0248400
Transcript ID LotjaGi1g1v0248400.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description transcription factor-like protein; TAIR: AT1G22070.1 transcription factor TGA3; Swiss-Prot: sp|Q39234|TGA3_ARATH Transcription factor TGA3; TrEMBL-Plants: tr|K7KMA1|K7KMA1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0248400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:59652598..59656736) extracted from Lotus japonicus Gifu genome v1.2.

CTTTAGTCTCAGCTTTGCTTTAATAATTTTGTTTGCATGTGGGAAAATAAAAATGATATTCTAACTAATGAGTTTTGTGA GCTATATAAATACTCAATTGTGATCACCAATCAGGGTCCTTCAGGGAGTAGCTGTATTCAGAGGTTGAAGATTCTATCAA GATAGCTAGCTATACATGTAGGTTAGTATTCATCAATCTGTAACAGTGTGTGAATTTGGTTTGAATTTGGATATATCCAA TTTGAAAATTGTCGTTTAGAGAGCAAAAGCTTGGACTCAAGTGTGGCTGGTTCCTGTTTATTTCTGGAAAATTATCATGT CATGAAAGACATTGGACTTCATTTGAACTTTGAAGTTGAACACTTTTTTATTACTTCTTTATGGGGGTTGTTGCTGTTGA CTTTTTTATAATTTCTACTTTTTTGTTGTTGAGAGCTTTGCTTAGTTGCTAGCTTTTGCTATCATTCTTGCAAAGGGAGG TGTTGAAGTTTGTTCCACATATATAACAGTTACATCTGTGCTGTATTAACAATTGCTTGGTTGCAGCAATTTTTGGGATT GAACGGCTCATACTATCACTCTTTAGCATGTTTGGATCAATCTTTCTTTTTCCTCATAATCAATTCTGACAAAGAGAAGG TACTCACCGAGGCTTCTCCACAGAATTGATTTTGTCTTCTAAATCAGTTGTCTATCTATGTATTTTTAGGGAGAGGGAAA GAGCTGGGGTATTTGAACTTTTTGAGTTATTGGAATCATAATAGATCAGAATTACGAGACAGCTATTGATTCTCTGTTAA AGTGACTTAGTTTAACATACTCAGGAGTCTCTTGTTTAGTGGAAAGTGGCATCAAATTGATGTTGTTTTTTTAATATTTC TATTATTATGTAGAAAACTCTTCTTTTATCATTTGGACATTGGACGAGATAAAAGAAGATCAATGGATATATATGAGCCA TTCCAGCAAGTTAGCATGTGGGGGGACAGCTTTAAAGTTGATGAGAGCTTGAATTCAATTGCTTCCCCAATGTTACTGGT GAACAACACTAGCATAGAGCCCAAGGTGAGAAAGTATGACTTTTACCCCTTTTTGTGTGAGTTATAGCATGTTTGGATAA ACTTTTCTTCCCTCATAATCAATTATGGCACTCAGAAGCTACTCAAAGAAGCTTCTCCCTATAATTGATTTTGGCTTTAA AATCAATTGTAGAAGGATTTTCATACATATACTTAGTCTAAGTTTATGCGGAAACTGGTTTGTGACAATCTTTGGAATTT GAATTTTCCAGTCTGAATATATTCTTCATGGACCAAGGGAGCCTTCTGGAGCTGATCAAGAGACTAAGAATAAAGATGTT AAGGTGATGAAATTTCTTCAACATGTCTCCTTCATGTATATCTACTGAACTGTTTTTTTTATTTCTTATGTCATGTCTGG ATAAGTTTCTTTTTCTCAGAATCAATTATGGCACCATCAGCTACTCACAGAAATTTCTCTTCAGAATTAATTTTGCCTTT AAAATCAATTGTATACCCTTCTTTCATGGTACATTATTGTAAGTTATAATTAAGAAGTATGAAGAGGGATCTTTTGTCGA AAATATGAGAGAAAAAGAACAGACTTTGGAGGGTACAAGTCTTAGGTTCTCCCAAACATTTTTATGCTGATAAAAACTGC AATGCATCCATACCCTCAATGCATGAATGATTTTGAGTTGTTAATTTGTCTGACATTTTGTTGCTCAAAATGCATGTGTA GGTGGTAAAGCGTCTTGCTCAGAATCGAGAGGCTGCTAGGAAATGCCGGCTGCGGAAAAAGGTAATTATACAAATGTTGG TGCAAGTAATGCATATAGCCGATCTCACTTAATGATATAAGGTTTTTGTTGTTGTTGGTTTTCAAGGTAGATTGTATTTT TCATCTGATTTATACTTCTTTTATACATAGGCTTATGTTCAACAATTAGAAACAAGTCGATTGAAGCTCATGCAATTAGA GCTGGAGATTGTGAAAGCAAGAAAGCAGGTGAACCAAAACTCAAAGCGTCACCTATACTTTTTCTGTTTATTGCTATTTG ATCCTTTCAATTGTCATGTTTAAGCATATACTGAAATGTCTAATCTACTTGCAGGGTATGCACATTGGCAATGTATTAGA TACCAGTTACATGGGATCACCAGAAACCATCAACCCAGGTTTGTGATCCTTAACACCAGTTTCAAGTTTTCTTAACACGT GTTCTTTTATTGATTGTGAGATATCATTTTGTTCTAGTTTGTATGCATTTGAGGAACTTGCATTAAGGTTCTGTTTTCTT CCTTGTTATAGTTTGTTACATTTAAGTGCTCCTTCTATTCTGTGAAGCAGGGATTGTTGCGTTTGAAATCGAATATGGAC AATGGGTTGAAGAGCAACATAGACGGAATGAAGAACTTAGAACAGCATTTCAGACTGATGCATCTGAAGTACAGCTCCGG CTACTTGTTCAGAGCATCTTGAACCATTACGCGAATCTTTGCAGAATGAAAGAATATGCTGCAAAAGCTGATGTACTCTA TTTACTCTCCGGCATGTGGAAAGCGTCAGTGGAGCGCATCTTCCTTTGGATTGGAGGATCCCGCCCCTCGCAGCTTCTAA ATGTACACCTTATGGTCTAATAGCATGTTTGGATATGCTTCGATTTTGCACAATAGAAGTAACAATGAGTAGTTTCTCAT TCTTTAGCATGTTTGGATCAGCTATTGTTTTCTCAAAATCAATTTAGGCATCCAGAAGCTTGCTACCCACATAAGCTTCT CTCCAGAATTGATTTTGACTTCTAAATCAACTGTAGAAGGATTTACAGTTATGCATTTACAAATGAAAATCTATTTTGAT TGAACTGGAAAACTGAAGAGTTTACAAACATGCTATAAATCTGATTCTGATAACTGCCTACATTCTCTCAAGGTTCAATC TATTTACATTTTTTAAGTTGAAAAGTTTTCATAACTAGTCCTTGTGCTTTACTATGATGTTTAGAACAAAAATATCTTAT GTATCTGATGATTTTGCACAACAAAGAGTGTCTTATCAGCTGGATTTGTGGTACTTTTCATGTCATGCTTCAATTTGCAT GCTGTTAAAAAAGCACAATGTGGCAGCCTCAATAAACCTCTTAACAACTTGATATTTTCTTAACAGCTCATTGTGCCACA ACTTGAGCCTTTGACTGATCAACAAATTGCTAGCATCAACAACCTTCGCCTATCGTCTCAGCAAGCTGAAGATGCTCTTT CACAAGGATTGGATAAACTCCAGCAGAGTCTCGTCCACGACATGGCGGTTGACCCATTGGTTGCAGGAAACTTTGGAATC CAGATGGCTATTGCCATTGAGAAATTTGAGGCACTAGAAAATTTTGTAAACCAGGTAATGTAACATCAGACAAAGTTTGT TGCAAATAACATTAGAACTGGATATCTTATGTTTTTTTAGTTCTTTTTCAGATAGTCATGTCCTCATTTTAGAAACCAAC TTGTTGATTCAAATAGAAATGGCCTTATGTTGCTAACCACTTATCCTAAATCCTGTGTGTTCAAATTAGAGAAGCTTCTC CCCAAAATTGATTCTGACTTTATAATCAATTGTAGAAGGGTTTCCAAACATGTTAATAATCAAATGCTTTCTCTTCTCCA CAGGCAGATCACCTTCGGCAGCAAACTCTGCTGCACATGTCGCGCATCCTGTCGACTAACCAAGCTGTTCGAGGCTTGCT AGCTCTTGGAGAATACTTTCATCGTCTTCGTGCTCTTTGTTCTCGTTGGAATGAACGTTCATGTGACTCCATGTCACCTA AGATTGCTCCATAGAGGAGAAGGCAGCATGCTTCTACTTAATGCTGCTATTTAGTTTACAGAACAGAACATAGGTGTATG AATGAAACTTAATATGTGTACCATGAAGCAAAACTATGTAATTCGCTGCTCTTGATGAGAGTATGCTTGTACATACTATA TAATGAGAAGGAGTTTATTTTTGGTTTCGCATCTTTTTGAGGGAAAAAGTCTCAAGTGTCCATTATTTTCCTTTACTTTT AATTGATAGTTTGAGTTCATTGTTATTGGGAAAATTCAGTTCAATTCAATGGCACAAGG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0248400.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATATATATGAGCCATTCCAGCAAGTTAGCATGTGGGGGGACAGCTTTAAAGTTGATGAGAGCTTGAATTCAATTGC TTCCCCAATGTTACTGGTGAACAACACTAGCATAGAGCCCAAGTCTGAATATATTCTTCATGGACCAAGGGAGCCTTCTG GAGCTGATCAAGAGACTAAGAATAAAGATGTTAAGGTGGTAAAGCGTCTTGCTCAGAATCGAGAGGCTGCTAGGAAATGC CGGCTGCGGAAAAAGGCTTATGTTCAACAATTAGAAACAAGTCGATTGAAGCTCATGCAATTAGAGCTGGAGATTGTGAA AGCAAGAAAGCAGGGTATGCACATTGGCAATGTATTAGATACCAGTTACATGGGATCACCAGAAACCATCAACCCAGGGA TTGTTGCGTTTGAAATCGAATATGGACAATGGGTTGAAGAGCAACATAGACGGAATGAAGAACTTAGAACAGCATTTCAG ACTGATGCATCTGAAGTACAGCTCCGGCTACTTGTTCAGAGCATCTTGAACCATTACGCGAATCTTTGCAGAATGAAAGA ATATGCTGCAAAAGCTGATGTACTCTATTTACTCTCCGGCATGTGGAAAGCGTCAGTGGAGCGCATCTTCCTTTGGATTG GAGGATCCCGCCCCTCGCAGCTTCTAAATCTCATTGTGCCACAACTTGAGCCTTTGACTGATCAACAAATTGCTAGCATC AACAACCTTCGCCTATCGTCTCAGCAAGCTGAAGATGCTCTTTCACAAGGATTGGATAAACTCCAGCAGAGTCTCGTCCA CGACATGGCGGTTGACCCATTGGTTGCAGGAAACTTTGGAATCCAGATGGCTATTGCCATTGAGAAATTTGAGGCACTAG AAAATTTTGTAAACCAGGCAGATCACCTTCGGCAGCAAACTCTGCTGCACATGTCGCGCATCCTGTCGACTAACCAAGCT GTTCGAGGCTTGCTAGCTCTTGGAGAATACTTTCATCGTCTTCGTGCTCTTTGTTCTCGTTGGAATGAACGTTCATGTGA CTCCATGTCACCTAAGATTGCTCCATAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0248400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDIYEPFQQVSMWGDSFKVDESLNSIASPMLLVNNTSIEPKSEYILHGPREPSGADQETKNKDVKVVKRLAQNREAARKC RLRKKAYVQQLETSRLKLMQLELEIVKARKQGMHIGNVLDTSYMGSPETINPGIVAFEIEYGQWVEEQHRRNEELRTAFQ TDASEVQLRLLVQSILNHYANLCRMKEYAAKADVLYLLSGMWKASVERIFLWIGGSRPSQLLNLIVPQLEPLTDQQIASI NNLRLSSQQAEDALSQGLDKLQQSLVHDMAVDPLVAGNFGIQMAIAIEKFEALENFVNQADHLRQQTLLHMSRILSTNQA VRGLLALGEYFHRLRALCSRWNERSCDSMSPKIAP
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR45693:SF40
1 348 348 2.1E-195 –
PANTHER
PTHR45693
1 348 348 2.1E-195 –
SMART
SM00338
61 121 61 1.4E-5
IPR004827
Pfam
PF00170
62 93 32 2.1E-9
IPR004827
SUPERFAMILY
SSF57959
65 98 34 1.13E-7 –
Gene3D
G3DSA:1.20.5.170
65 117 53 9.7E-10 –
ProSitePatterns
PS00036
68 83 16 -
IPR004827
Coils
Coil
84 111 28 - –
ProSiteProfiles
PS51806
134 344 211 29.129
IPR025422
Pfam
PF14144
153 226 74 5.9E-26
IPR025422

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006351
Biological process Transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
Subterm of
Part of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0248400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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