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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0256900 |
| Transcript ID | LotjaGi1g1v0256900.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phototropic-responsive NPH3 family protein; TAIR: AT3G08570.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9C9Z7|Y3857_ARATH BTB/POZ domain-containing protein At3g08570; TrEMBL-Plants: tr|A0A0B2S5U1|A0A0B2S5U1_GLYSO BTB/POZ domain-containing protein; Found in the gene: LotjaGi1g1v0256900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:62201190..62203902) extracted from Lotus japonicus Gifu genome v1.2.
GAGTTATCTAAATTCTTGGGAGAATAGTAGAATTGCAGGTTTAAAGACAATTGTCATGTCATATTGATCTTTTTTTATGG CAGGATTTTTGCTGATGTTGCTGGTGACATTACGATTGTTGTTGATGGGGAATCATTTTTGCTGCACAAGGTAAATCTTT GAAGATGTGGTTTAAAGACTAGACAAATTCATGAGCTTGTTCTGTTTTATATACTACTTTCTATGAATTGGGATTTAATG AATACTTTATGAGATAGAATCTATCATATGTTAGCATGGACTAAAATCTACAACTGTTTTTCCAAAAGTAATGCCTACTT TAGAAATCAATCAAAGGGAAAAGCTCATGACTCTATTTGGCTTCTTTTGAGTACACATTAGCTCCCCCCATTCAACATAA GACTATTCAGACTTTGTTTGGATATCTGTGACCATCACTGTAAATGAGCGTTAGTCCTCACTTCGAGACAAAAAAAAACA GATGAAACTTTTCTTGTTGATTGAGATGAAAATTCGTTTACATTGCACTCAACTAGTAACCAAACACACTTAGATGATGT CTTAAATTGACCAAAACAGTTAGATTGAACTCAAAATCTTTAAAAACTAATTTGTTACTTTTTCCTGTATTCATGAAGTT TCCCCTGGTGACCCTAAGTGGGAAGATCAGGAAGATGGTTGCTGAAGCCAAAGGCTCCAATCTTTCAAACTTGGAGCTAC TCAACTTTCCAGGGGGATACCCAACATTTGAACTCGCCATGAAGTTCTGTTACGGGATGAATTTCGAGATCACAACATTC AATGTCGCGAGGCTACGTTGCGCGGCTGAGTACCTGGAAATGACAGAAGAATACCGGGAGCGAAACCTCGTCTCAAGAAC AGATACTTATCTCAATGAGATTGTCTTTCAAAGTCTTCAGAAGTCAGTGGAAGTACTATCCACCTGTGAGATGCTACCTC CAAACATGGTGGAGGAGATTAGAATATCGAAAGGGTGTGTAGAAGCCATTGCAATGAATGCATGCAAGGAGCAACTAGCT TCTGGTTTATCTAAATTAGATTGTGATGGTGAATCTAAAGAACTAAAGGAAGGTTGTGTTGCATGGTGGGTTGAAGATCT CTCAGTGTTGAGTATTGATTTCTTCCAGAGAGTTATAAGTGCTATGGGAAGAATGGGAGTTGGATCAGATAACATCATTG CTTCATTGATTCATTATGCTGAATCATCACTTAAGGGTATTGGGAAGAGTCAATTTTGGAATGCATCAAGGACAAGTTCA AGTCCAACCAATGGAGAAAAGGATCAAAGGACAATTGTGGAAACTCTTGTAAGTCTCATACCAACAGACAAGAGCTCTTC CATTCCATTGACCTTCTTGTTTGGCATGTTGAAGATGGCTATCATGTTGGGTGCAACCATTCCCTGTGGGCTTGAGCTTG AAAGGAGGATAGCATTAAGGTTAGAAATGGTTTCACTTGATGATCTTCTTATACCATCTCTGCAGAGTGGGGATTCTCTG TTTGATGTTGATACAGTTCACAGGGTGCTGGTGAATTTCTTGCAGAGGATTGACGAGGAAGAAAGTGAAGATTATGGATA TGAATCTGATGAGGTTGTTTCTAATTGCCATGGTTCTCTTCTAAAAGTGGGGCAGCTTATGGATGCTTATTTAACAGAAA TTGCTCCTGATCCTTGCTTAAGTCTACTGAAATTCATTGCTTTGATAGAGGCACTTCCTGATTATGCTCGTGTCATTGAT GATGGCCTTTATAGAGCTGTCGACATTTATTTGAAGGTAAATTTGCTTCAACTGAAGGGAAACCCCTTTTCTGATTCTAA TAGTTATAGCATGTTTGGATCAACTTCTCTTTCATCAGAATCAATTCTGCAACTTAGATCCCCATAATTGAATTGACTTC CAAATTAATTATATAAGGGTTTCCAAACACGCACTTAAGCACATTCTAGTCAAACTTCATTCTCAATCATGCTAGAGTTA CACTTACAAAACTAAGGGAATTACTATTCGTATAGCCGGTTTCTCTCCTTGAACCAACCACATGCAGGTGGGCTAGTGCA GGGAGAGAAAAACGTGGTTCGAATAGTAATCCCCCAAAACTAAACAGTTGAGTGTGTTTGTTATTCATTTTTCCTTCTTC ATGCTGACAAAACACAGCACCTCTTTTTGATCAGGCACATACAAAATTGACAGAACAAGAATGCAAGAAGCTTTGCAAGT TTATAGACTGCCAGAAGCTGTCTCAAGAAGCATGCAATCATGCTGCCCAGAACGACAGGCTTCCAGTGCAGATGGTGGTG CAAGTCCTGTATGTTGAGCAGCTGCGTTTGAAGAATGCACTGTCAGGGAGTTCAGGAGATGGGCTGCAATCACAGAGAAT AAGCAGCGGTGTTCCAAGCGCTGCCATGTCTCCGAGGGATAACTACGCTTCTCTGCGTCGGGAGAACCGAGAGCTGAAGC TAGAGATTTCGAGATTGAGGGTGAGGCTGAGCGAGTTGGAGAAGGAGCAGATGTTCATGAAACAAGGCATGATTAATAAG GCGGGAAATGGAAGAACATTCTTAACCTCCATTTCTAAGGGGATAGGGAGAATTGCCATGTTTAGCAGTCAAGGTGGAGG TAAACGCCAGAAATCAGTTAGGAAGTCTAGGGAGGGAAAAACTGGAAGAAGTAGGAGATACTCTGTCTCATAG
CDS sequence (LotjaGi1g1v0256900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGCTGAAGCCAAAGGCTCCAATCTTTCAAACTTGGAGCTACTCAACTTTCCAGGGGGATACCCAACATTTGAACT CGCCATGAAGTTCTGTTACGGGATGAATTTCGAGATCACAACATTCAATGTCGCGAGGCTACGTTGCGCGGCTGAGTACC TGGAAATGACAGAAGAATACCGGGAGCGAAACCTCGTCTCAAGAACAGATACTTATCTCAATGAGATTGTCTTTCAAAGT CTTCAGAAGTCAGTGGAAGTACTATCCACCTGTGAGATGCTACCTCCAAACATGGTGGAGGAGATTAGAATATCGAAAGG GTGTGTAGAAGCCATTGCAATGAATGCATGCAAGGAGCAACTAGCTTCTGGTTTATCTAAATTAGATTGTGATGGTGAAT CTAAAGAACTAAAGGAAGGTTGTGTTGCATGGTGGGTTGAAGATCTCTCAGTGTTGAGTATTGATTTCTTCCAGAGAGTT ATAAGTGCTATGGGAAGAATGGGAGTTGGATCAGATAACATCATTGCTTCATTGATTCATTATGCTGAATCATCACTTAA GGGTATTGGGAAGAGTCAATTTTGGAATGCATCAAGGACAAGTTCAAGTCCAACCAATGGAGAAAAGGATCAAAGGACAA TTGTGGAAACTCTTGTAAGTCTCATACCAACAGACAAGAGCTCTTCCATTCCATTGACCTTCTTGTTTGGCATGTTGAAG ATGGCTATCATGTTGGGTGCAACCATTCCCTGTGGGCTTGAGCTTGAAAGGAGGATAGCATTAAGGTTAGAAATGGTTTC ACTTGATGATCTTCTTATACCATCTCTGCAGAGTGGGGATTCTCTGTTTGATGTTGATACAGTTCACAGGGTGCTGGTGA ATTTCTTGCAGAGGATTGACGAGGAAGAAAGTGAAGATTATGGATATGAATCTGATGAGGTTGTTTCTAATTGCCATGGT TCTCTTCTAAAAGTGGGGCAGCTTATGGATGCTTATTTAACAGAAATTGCTCCTGATCCTTGCTTAAGTCTACTGAAATT CATTGCTTTGATAGAGGCACTTCCTGATTATGCTCGTGTCATTGATGATGGCCTTTATAGAGCTGTCGACATTTATTTGA AGGCACATACAAAATTGACAGAACAAGAATGCAAGAAGCTTTGCAAGTTTATAGACTGCCAGAAGCTGTCTCAAGAAGCA TGCAATCATGCTGCCCAGAACGACAGGCTTCCAGTGCAGATGGTGGTGCAAGTCCTGTATGTTGAGCAGCTGCGTTTGAA GAATGCACTGTCAGGGAGTTCAGGAGATGGGCTGCAATCACAGAGAATAAGCAGCGGTGTTCCAAGCGCTGCCATGTCTC CGAGGGATAACTACGCTTCTCTGCGTCGGGAGAACCGAGAGCTGAAGCTAGAGATTTCGAGATTGAGGGTGAGGCTGAGC GAGTTGGAGAAGGAGCAGATGTTCATGAAACAAGGCATGATTAATAAGGCGGGAAATGGAAGAACATTCTTAACCTCCAT TTCTAAGGGGATAGGGAGAATTGCCATGTTTAGCAGTCAAGGTGGAGGTAAACGCCAGAAATCAGTTAGGAAGTCTAGGG AGGGAAAAACTGGAAGAAGTAGGAGATACTCTGTCTCATAG
Protein sequence (LotjaGi1g1v0256900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVAEAKGSNLSNLELLNFPGGYPTFELAMKFCYGMNFEITTFNVARLRCAAEYLEMTEEYRERNLVSRTDTYLNEIVFQS LQKSVEVLSTCEMLPPNMVEEIRISKGCVEAIAMNACKEQLASGLSKLDCDGESKELKEGCVAWWVEDLSVLSIDFFQRV ISAMGRMGVGSDNIIASLIHYAESSLKGIGKSQFWNASRTSSSPTNGEKDQRTIVETLVSLIPTDKSSSIPLTFLFGMLK MAIMLGATIPCGLELERRIALRLEMVSLDDLLIPSLQSGDSLFDVDTVHRVLVNFLQRIDEEESEDYGYESDEVVSNCHG SLLKVGQLMDAYLTEIAPDPCLSLLKFIALIEALPDYARVIDDGLYRAVDIYLKAHTKLTEQECKKLCKFIDCQKLSQEA CNHAAQNDRLPVQMVVQVLYVEQLRLKNALSGSSGDGLQSQRISSGVPSAAMSPRDNYASLRRENRELKLEISRLRVRLS ELEKEQMFMKQGMINKAGNGRTFLTSISKGIGRIAMFSSQGGGKRQKSVRKSREGKTGRSRRYSVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 541 | 541 | 2.7E-295 | ||
| PANTHER | 1 | 541 | 541 | 2.7E-295 | – | |
| Phobius | 1 | 231 | 231 | - | – | |
| CDD | 1 | 68 | 68 | 7.31383E-21 | – | |
| SUPERFAMILY | 9 | 58 | 50 | 5.89E-5 | ||
| ProSiteProfiles | 143 | 425 | 283 | 86.708 | ||
| Pfam | 144 | 401 | 258 | 1.2E-87 | ||
| Phobius | 232 | 253 | 22 | - | – | |
| Phobius | 254 | 546 | 293 | - | – | |
| MobiDBLite | 432 | 455 | 24 | - | – | |
| MobiDBLite | 432 | 451 | 20 | - | – | |
| Coils | 458 | 485 | 28 | - | – | |
| MobiDBLite | 516 | 546 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0256900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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