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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0256900 |
| Transcript ID | LotjaGi1g1v0256900.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phototropic-responsive NPH3 family protein; TAIR: AT3G08570.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9C9Z7|Y3857_ARATH BTB/POZ domain-containing protein At3g08570; TrEMBL-Plants: tr|K7MTW7|K7MTW7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0256900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:62201825..62204022) extracted from Lotus japonicus Gifu genome v1.2.
AAGTTTCCCCTGGTGACCCTAAGTGGGAAGATCAGGAAGATGGTTGCTGAAGCCAAAGGCTCCAATCTTTCAAACTTGGA GCTACTCAACTTTCCAGGGGGATACCCAACATTTGAACTCGCCATGAAGTTCTGTTACGGGATGAATTTCGAGATCACAA CATTCAATGTCGCGAGGCTACGTTGCGCGGCTGAGTACCTGGAAATGACAGAAGAATACCGGGAGCGAAACCTCGTCTCA AGAACAGATACTTATCTCAATGAGATTGTCTTTCAAAGTCTTCAGAAGTCAGTGGAAGTACTATCCACCTGTGAGATGCT ACCTCCAAACATGGTGGAGGAGATTAGAATATCGAAAGGGTGTGTAGAAGCCATTGCAATGAATGCATGCAAGGAGCAAC TAGCTTCTGGTTTATCTAAATTAGATTGTGATGGTGAATCTAAAGAACTAAAGGAAGGTTGTGTTGCATGGTGGGTTGAA GATCTCTCAGTGTTGAGTATTGATTTCTTCCAGAGAGTTATAAGTGCTATGGGAAGAATGGGAGTTGGATCAGATAACAT CATTGCTTCATTGATTCATTATGCTGAATCATCACTTAAGGGTATTGGGAAGAGTCAATTTTGGAATGCATCAAGGACAA GTTCAAGTCCAACCAATGGAGAAAAGGATCAAAGGACAATTGTGGAAACTCTTGTAAGTCTCATACCAACAGACAAGAGC TCTTCCATTCCATTGACCTTCTTGTTTGGCATGTTGAAGATGGCTATCATGTTGGGTGCAACCATTCCCTGTGGGCTTGA GCTTGAAAGGAGGATAGCATTAAGGTTAGAAATGGTTTCACTTGATGATCTTCTTATACCATCTCTGCAGAGTGGGGATT CTCTGTTTGATGTTGATACAGTTCACAGGGTGCTGGTGAATTTCTTGCAGAGGATTGACGAGGAAGAAAGTGAAGATTAT GGATATGAATCTGATGAGGTTGTTTCTAATTGCCATGGTTCTCTTCTAAAAGTGGGGCAGCTTATGGATGCTTATTTAAC AGAAATTGCTCCTGATCCTTGCTTAAGTCTACTGAAATTCATTGCTTTGATAGAGGCACTTCCTGATTATGCTCGTGTCA TTGATGATGGCCTTTATAGAGCTGTCGACATTTATTTGAAGGTAAATTTGCTTCAACTGAAGGGAAACCCCTTTTCTGAT TCTAATAGTTATAGCATGTTTGGATCAACTTCTCTTTCATCAGAATCAATTCTGCAACTTAGATCCCCATAATTGAATTG ACTTCCAAATTAATTATATAAGGGTTTCCAAACACGCACTTAAGCACATTCTAGTCAAACTTCATTCTCAATCATGCTAG AGTTACACTTACAAAACTAAGGGAATTACTATTCGTATAGCCGGTTTCTCTCCTTGAACCAACCACATGCAGGTGGGCTA GTGCAGGGAGAGAAAAACGTGGTTCGAATAGTAATCCCCCAAAACTAAACAGTTGAGTGTGTTTGTTATTCATTTTTCCT TCTTCATGCTGACAAAACACAGCACCTCTTTTTGATCAGGCACATACAAAATTGACAGAACAAGAATGCAAGAAGCTTTG CAAGTTTATAGACTGCCAGAAGCTGTCTCAAGAAGCATGCAATCATGCTGCCCAGAACGACAGGCTTCCAGTGCAGATGG TGGTGCAAGTCCTGTATGTTGAGCAGCTGCGTTTGAAGAATGCACTGTCAGGGAGTTCAGGAGATGGGCTGCAATCACAG AGAATAAGCAGCGGTGTTCCAAGCGCTGCCATGTCTCCGAGGGATAACTACGCTTCTCTGCGTCGGGAGAACCGAGAGCT GAAGCTAGAGATTTCGAGATTGAGGGTGAGGCTGAGCGAGTTGGAGAAGGAGCAGATGTTCATGAAACAAGGCATGATTA ATAAGGCGGGAAATGGAAGAACATTCTTAACCTCCATTTCTAAGGGGATAGGGAGAATTGCCATGTTTAGCAGTCAAGGT GGAGGTAAACGCCAGAAATCAGTTAGGAAGTCTAGGGAGGGAAAAACTGGAAGAAGTAGGAGATACTCTGTCTCATAGAT ATTGTTCTTCTTCTTAGTTTAGCTTTTACAGCACCCTCCACTTAAACCTTTTCAGGTTATAACAACTTGTAAATGAATTG GTAAAAAGTTTCCCTTAATCTTTAGTCCTAGTCTCACG
CDS sequence (LotjaGi1g1v0256900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGCTGAAGCCAAAGGCTCCAATCTTTCAAACTTGGAGCTACTCAACTTTCCAGGGGGATACCCAACATTTGAACT CGCCATGAAGTTCTGTTACGGGATGAATTTCGAGATCACAACATTCAATGTCGCGAGGCTACGTTGCGCGGCTGAGTACC TGGAAATGACAGAAGAATACCGGGAGCGAAACCTCGTCTCAAGAACAGATACTTATCTCAATGAGATTGTCTTTCAAAGT CTTCAGAAGTCAGTGGAAGTACTATCCACCTGTGAGATGCTACCTCCAAACATGGTGGAGGAGATTAGAATATCGAAAGG GTGTGTAGAAGCCATTGCAATGAATGCATGCAAGGAGCAACTAGCTTCTGGTTTATCTAAATTAGATTGTGATGGTGAAT CTAAAGAACTAAAGGAAGGTTGTGTTGCATGGTGGGTTGAAGATCTCTCAGTGTTGAGTATTGATTTCTTCCAGAGAGTT ATAAGTGCTATGGGAAGAATGGGAGTTGGATCAGATAACATCATTGCTTCATTGATTCATTATGCTGAATCATCACTTAA GGGTATTGGGAAGAGTCAATTTTGGAATGCATCAAGGACAAGTTCAAGTCCAACCAATGGAGAAAAGGATCAAAGGACAA TTGTGGAAACTCTTGTAAGTCTCATACCAACAGACAAGAGCTCTTCCATTCCATTGACCTTCTTGTTTGGCATGTTGAAG ATGGCTATCATGTTGGGTGCAACCATTCCCTGTGGGCTTGAGCTTGAAAGGAGGATAGCATTAAGGTTAGAAATGGTTTC ACTTGATGATCTTCTTATACCATCTCTGCAGAGTGGGGATTCTCTGTTTGATGTTGATACAGTTCACAGGGTGCTGGTGA ATTTCTTGCAGAGGATTGACGAGGAAGAAAGTGAAGATTATGGATATGAATCTGATGAGGTTGTTTCTAATTGCCATGGT TCTCTTCTAAAAGTGGGGCAGCTTATGGATGCTTATTTAACAGAAATTGCTCCTGATCCTTGCTTAAGTCTACTGAAATT CATTGCTTTGATAGAGGCACTTCCTGATTATGCTCGTGTCATTGATGATGGCCTTTATAGAGCTGTCGACATTTATTTGA AGCACCTCTTTTTGATCAGGCACATACAAAATTGA
Protein sequence (LotjaGi1g1v0256900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVAEAKGSNLSNLELLNFPGGYPTFELAMKFCYGMNFEITTFNVARLRCAAEYLEMTEEYRERNLVSRTDTYLNEIVFQS LQKSVEVLSTCEMLPPNMVEEIRISKGCVEAIAMNACKEQLASGLSKLDCDGESKELKEGCVAWWVEDLSVLSIDFFQRV ISAMGRMGVGSDNIIASLIHYAESSLKGIGKSQFWNASRTSSSPTNGEKDQRTIVETLVSLIPTDKSSSIPLTFLFGMLK MAIMLGATIPCGLELERRIALRLEMVSLDDLLIPSLQSGDSLFDVDTVHRVLVNFLQRIDEEESEDYGYESDEVVSNCHG SLLKVGQLMDAYLTEIAPDPCLSLLKFIALIEALPDYARVIDDGLYRAVDIYLKHLFLIRHIQN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | 1 | 68 | 68 | 7.04403E-21 | – | |
| PANTHER | 1 | 375 | 375 | 5.6E-194 | – | |
| Phobius | 1 | 231 | 231 | - | – | |
| PANTHER | 1 | 375 | 375 | 5.6E-194 | ||
| SUPERFAMILY | 8 | 58 | 51 | 3.37E-5 | ||
| ProSiteProfiles | 143 | 384 | 242 | 60.916 | ||
| Pfam | 144 | 375 | 232 | 1.1E-71 | ||
| Phobius | 232 | 253 | 22 | - | – | |
| Phobius | 254 | 384 | 131 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0256900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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