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LotjaGi1g1v0257200.1

Overview

Field Value
Gene ID LotjaGi1g1v0257200
Transcript ID LotjaGi1g1v0257200.1
Lotus japonicus genome version Gifu v1.2
Description Aminotransferase; TAIR: AT1G77670.1 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; Swiss-Prot: sp|P77806|YBDL_ECOLI Methionine aminotransferase; TrEMBL-Plants: tr|C6T912|C6T912_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0257200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:62285853..62287297) extracted from Lotus japonicus Gifu genome v1.2.

TATTTTCATAAGTTGTTCGGAGTAACTTATGAATAAGAGCGTATGCTTATCCATGATATATTGTCCAGTTTATTTTGATA AGTTACTCAAATTAATTTATGATTAAACGCTTTTGCGATAAACTTTGTTGCCATAAGCATTTAATTAAGTTATTTACCCA AACAAAGGGAAATGACCAAGGATGCTATATTGCCCGGGAGAAAGGGGAGGATTTTTGTCTTTTTGAAAGAATTCAAATTT CGGAGTTATGCCACTTGTTTGCATTGATTCTTGCTGATTGTGATTTGTTTGTTAGATTGCCAAGCGCTTAGAGAAGTTCA AACCAAAAATCTTCACCCAAATGAGCATGCTTGCCATCAAACATGGAGCTGTAAACCTTGGTCAGGGATTTCCCAACTTT GATGGTCCAGAATTTGTAAAGGAAGCAGCGATTCAGGCTATCAGGGATGGGAAAAATCAGTATGCGAGGGGTTATGGAGT TCCTGACCTGAACATTGCCATTGCTGAGAGATTTAAGAAAGATACTGGACTAGTGGTAGACCCTGAAAAGGAAGTTACTG TTACATCTGGATGCACAGAAGCAATACTTGCAACTATGTTAGGATTAATAAATCCTGGTGATGAGGTTATCCTTTTTGCT CCTTTTTATGATTCTTATAATGCCCACTTTATCCATGGCTGGTGCAGAAATTAAAAGCATCACTCTGCAACCTCCGGATT TTGCGGTCCCGATTGAAGAGTTGAAGTCCACCATCTCTAAGAATACCCGTGCTGTTTTTATAAATACCCCTCACAACCCT ACTGGAAAGATTTTTACTCTGGAGGAACTCAATTCCATTGCATCTCTCTGCATTGAGAATGATGCTCTGGTTTTCACAGA TGAAGTTTATCATAAGTTGGCATTTGATATGGAGCACATTTCGATCGCTTCTTTGCCTGGAATGTTTGAGAGAACAGTGA CAATGAACTCTTTGGGGAAGACATTCTCCTTAACAGGATGGAAGGTAGGATGGGCCATAGCACCACCACATTTAACATGG GGACTGCGACAGGCACACTCTTTTACCACTTTCTCAACCCCCAATCCTTTGCAATGGGGTGCTGCAGCAGCTCTCAGAGC ACCGGATTCTTACTTTGCGGAGCTAAAGAAGGATTATATGGCAAAGAGAGCAATTTTGGTGGAAGGATTGGTAGCGGTTG GCTTCAAGGTGTTCCCATCAAGTGGAACTTTCTTTGTGTTAGTAGATCACACCCCTTTTGGACATGAAAATGATGTTGCA TTCTGTGAATATCTAATTAAGGAGGTGGGAGTGGCGGCAATACCTTCCAGTGTATTTTACTTGAATCCAGAAGAGGAAAA GAATCTAGTCAGGTTTACTTTCTGCAAGGATGAGGAAACTCTGAAGGCTGCAGTTCAGAGGATGAAGGAGAAGCTTAGAA AATAA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0257200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAATAAGAGCATTGCCAAGCGCTTAGAGAAGTTCAAACCAAAAATCTTCACCCAAATGAGCATGCTTGCCATCAAACA TGGAGCTGTAAACCTTGGTCAGGGATTTCCCAACTTTGATGGTCCAGAATTTGTAAAGGAAGCAGCGATTCAGGCTATCA GGGATGGGAAAAATCAGTATGCGAGGGGTTATGGAGTTCCTGACCTGAACATTGCCATTGCTGAGAGATTTAAGAAAGAT ACTGGACTAGTGGTAGACCCTGAAAAGGAAGTTACTGTTACATCTGGATGCACAGAAGCAATACTTGCAACTATGTTAGG ATTAATAAATCCTGGTGATGAGGTTATCCTTTTTGCTCCTTTTTATGATTCTTATAATGCCCACTTTATCCATGGCTGGT GCAGAAATTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0257200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNKSIAKRLEKFKPKIFTQMSMLAIKHGAVNLGQGFPNFDGPEFVKEAAIQAIRDGKNQYARGYGVPDLNIAIAERFKKD TGLVVDPEKEVTVTSGCTEAILATMLGLINPGDEVILFAPFYDSYNAHFIHGWCRN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43807
3 128 126 1.1E-55 –
PANTHER
PTHR43807:SF20
3 128 126 1.1E-55 –
SUPERFAMILY
SSF53383
5 129 125 1.55E-28
IPR015424
Gene3D
G3DSA:3.90.1150.10
15 42 28 3.1E-42
IPR015422
Pfam
PF00155
30 129 100 1.5E-14
IPR004839
Gene3D
G3DSA:3.40.640.10
43 128 86 3.1E-42
IPR015421

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0009058
Biological process Biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
Subterm of
GO:0030170
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0257200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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