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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0257400 |
| Transcript ID | LotjaGi1g1v0257400.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aminotransferase; TAIR: AT1G77670.1 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; Swiss-Prot: sp|P9WPZ4|DAPC_MYCTO Probable N-succinyldiaminopimelate aminotransferase DapC; TrEMBL-Plants: tr|I3T4J9|I3T4J9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0257400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:62343192..62346242) extracted from Lotus japonicus Gifu genome v1.2.
GTCTCAGTCTCGGGCCGTTATTGAGCAGTGGGCATTTAGTTTGGTCAGAAAGAATCAAATTCCATATCTATGCAGGTCTA CAGAACCTGCACCTGCCCTCATTTGGGGTCGAGATTCATGCCTTCCTCCAAACTACTACTATCATTAAACTTTACAAATC ATTTCATCACACCCTCTAATCTTCCAACCCCAAAGTTCCCATCTTCGATTGCAGCCACCATGTCCACCACTGTTTCCACC CAGAATGACACCACTGCCCAGAAGACGCATCATCCTGTGCAGGTTCCACACTCTTCTCTTGTTCCCCATTTTTAGATCCT TCAAATCAAATTACACTTTCTTTCATTTTCCCTGATCCGTAAATTACACATATAGTATCGTTTTTCCCTTTGTCAATGTG AAATTGATTCACTCCAGTTAAATATTTTAGCTTTCATTAGTTTATCTAATACACTAGGGACATAGTATCTGTCAGTGTTC ACGGGCACATAGTATCTGTTTGTCCAGGGTTTTAAATTGTGCTCGCGGATGTGGTAATGTTGTGGAACTGTGGACAAATG TGGGTTGATGTGGCTGCAATTGCAATTGTGATGCTGTTGCGGGGGGCTAAAAACCCTCTACACTGCGGAATCAATTGCAG CTGTGGACCGCGATTTAAAACCCTAGGTTTATGTTAGCCTTATAGTTGACTAAATAGCTACTATTATTTTGTACTTGCAT CATGATACTGTGTGCTTGACCATGGAGCATCCAGGTAAGGGCACCAGAGGAGAATTGATCATATATATATATATGAATGG ATGAAGAATTAGTTTTAAGTAAATTAATATTTGACCTTAGCTCTCAATTTCTCACCTGATATGCCCTATAATAACATGGG ATTGGACATTCACAGACCATAAATTACCCTTGTATTTCATGCATATTCATATTCTTTTGAATTACATGCTGTCTTTGTGA AGGGTGTATTTGCAACAATTTAGTTTATTTGAGGATGCTGTCCTGTCTTGCTTGCAAGTCCATACCAGTGTCAGTGATCA TACCTAGCCTAGTAGACAGGGGAAGGTTTTTTACAGGAAGGATTTTAGTTCTATTTGTATTGTACCTGGTATCTGCATTG AATAAAATTGAAATTCTTAGTACATAGTTGAGCCATGTATTTGCATTTATCCTTGCTGATTGCCATTTGTTTGTTAGGTT GCAAAGCGCTTGGAGAAGTTCAAAACAACAATCTTCACCCAAATAAGCACGCTTGCTGTCAAACATGGAGCCATAAACCT TGGTCAGGGCTTCCCCAACTTTGATGGGCCAGAATTTGTAAAGGAAGCTGCTATTCAGGCAATCAGGGACGGGAAAAATC AGTATGCCAGGGGTTATGGAGTTCCTGACCTGAACATTGCCATTGCTGAGAGATTTAAGAAAGATACTGGACTAGATGTA GACCCTGAAAAGGAAGTTACTGTTACATCTGGATGCACAGAAGCAATAGCTGCAACCATGTTAGGATTAATAAATCCTGG TGATGAGGTTATCCTATTTGCTCCTTTTTATGATTCTTATGAAGCAACTTTATCCATGGCTGGTGCTAAAGTAAAAAGCA TCACTCTGCGCCCTCCGGATTTTGCTGTCCCGATTGAAGAGTTGAGATCCACTATCTCAAAGAACACCCGTGCCATTCTT TTAAATACCCCTCACAACCCTACTGGAAAGATGTTCACTAGAGAGGAACTCAATACCATTGCATCTCTTTGTATTGAGAA TGATGTTCTGGTTTTCACTGATGAAGTTTATGATAAATTGGCATTTGATATGGAGCACATTTCGTTGGCTTCTTTGCCTG GAATGTTTGAAAGGACAGTGACAATGAACTCCTTGGGGAAGACATTCTCCTTGACAGGGTGGAAGATCGGGTGGGCAATA GCACCACCACACTTAACATGGGGAGTGCGGCAAGCGCATGCTTTTCTCACATTCGCAACCTCCAATGCTAACCAATGGGC TGCTGCGGTGGCTCTTCGAGCACCGGATTCTTACTTTGTTGATCTAAAGAGGGATTATCTGGCGAAAAGAGCTATTTTGG TGGAAGGATTGAATGCTGTTGGCTTCAAGGTGTTCCCATCCAGTGGAACTTACTTTGTGGTTGTAGATCACACCCCTTTT GGACATGAAAATGATGTTGCATTCTGTGAATATCTTATTAAGGAGGTGGGAGTGGCAGCGATCCCGACTAGTGTGTTTTA CTTGAATCCAGAAGAGGGAAAGAATCTGGTCAGATTTACTTTCTGCAAGGATGAGGAAACTCTTAGGGCTGCTGTTGAGA GGATGAAGGAGAAGCTTAGAAAATGATTCCATTGCAGGATCTAGTCATGTGATATATATCATTATATTGGATTGAAGACA TTTACCTTTTTAGAAACCTAAGTGCAGGATTTGTAATAACTTCCAATTGATTCTCGGCAGTGTGAGACATTACCAAAAAC TTATCTGCTAAAATTGTTTTTCTTCTCCTGAATCTCAATGTTATGAATGAGTATCTACTGGTTAACGAAGCATCATCTGA AGGGCATATAATTCAATCACCAGCTAGTAAGTAATGTCATTCAGATTTTATTCAACTTGTTCAGGCAGGGTTGTATTTCC ATGATCATGTTGATGTTGAATCTTATCATTGGGATGCATAGAATCAATTATAAAACGTCGCATGACCCAATATTCCCCCC TTTAAACTTAGGATGTTAGAGCATGTTTGGTTGCAAGTTTAGAATTCATGTTCGACCTCAAAATCACGTTAGCATAGAAG CTACAATGTGGATCTTCTCCCCTAACGTGCTTTGGAGTGTGTATCGAACACACATCCAAACATCCATGTGCATCTCATGA GAGGGCAATTTATGTTTTTTATATCTGGATTAAGTAATGTCATTCAGATTTTATAGCCGGTAAATGTAAAACTAGCTGAT ATCTTGACTATGTGTCAATTAGTAGGATAAGACTTTTGTTGTTATCGTCGTTGCGGTAGTTGTTGTATCTGTGGAATACG AAATTAGGATC
CDS sequence (LotjaGi1g1v0257400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGGTCTACAGAACCTGCACCTGCCCTCATTTGGGGTCGAGATTCATGCCTTCCTCCAAACTACTACTATCATTAAA CTTTACAAATCATTTCATCACACCCTCTAATCTTCCAACCCCAAAGTTCCCATCTTCGATTGCAGCCACCATGTCCACCA CTGTTTCCACCCAGAATGACACCACTGCCCAGAAGACGCATCATCCTGTGCAGGTTGCAAAGCGCTTGGAGAAGTTCAAA ACAACAATCTTCACCCAAATAAGCACGCTTGCTGTCAAACATGGAGCCATAAACCTTGGTCAGGGCTTCCCCAACTTTGA TGGGCCAGAATTTGTAAAGGAAGCTGCTATTCAGGCAATCAGGGACGGGAAAAATCAGTATGCCAGGGGTTATGGAGTTC CTGACCTGAACATTGCCATTGCTGAGAGATTTAAGAAAGATACTGGACTAGATGTAGACCCTGAAAAGGAAGTTACTGTT ACATCTGGATGCACAGAAGCAATAGCTGCAACCATGTTAGGATTAATAAATCCTGGTGATGAGGTTATCCTATTTGCTCC TTTTTATGATTCTTATGAAGCAACTTTATCCATGGCTGGTGCTAAAGTAAAAAGCATCACTCTGCGCCCTCCGGATTTTG CTGTCCCGATTGAAGAGTTGAGATCCACTATCTCAAAGAACACCCGTGCCATTCTTTTAAATACCCCTCACAACCCTACT GGAAAGATGTTCACTAGAGAGGAACTCAATACCATTGCATCTCTTTGTATTGAGAATGATGTTCTGGTTTTCACTGATGA AGTTTATGATAAATTGGCATTTGATATGGAGCACATTTCGTTGGCTTCTTTGCCTGGAATGTTTGAAAGGACAGTGACAA TGAACTCCTTGGGGAAGACATTCTCCTTGACAGGGTGGAAGATCGGGTGGGCAATAGCACCACCACACTTAACATGGGGA GTGCGGCAAGCGCATGCTTTTCTCACATTCGCAACCTCCAATGCTAACCAATGGGCTGCTGCGGTGGCTCTTCGAGCACC GGATTCTTACTTTGTTGATCTAAAGAGGGATTATCTGGCGAAAAGAGCTATTTTGGTGGAAGGATTGAATGCTGTTGGCT TCAAGGTGTTCCCATCCAGTGGAACTTACTTTGTGGTTGTAGATCACACCCCTTTTGGACATGAAAATGATGTTGCATTC TGTGAATATCTTATTAAGGAGGTGGGAGTGGCAGCGATCCCGACTAGTGTGTTTTACTTGAATCCAGAAGAGGGAAAGAA TCTGGTCAGATTTACTTTCTGCAAGGATGAGGAAACTCTTAGGGCTGCTGTTGAGAGGATGAAGGAGAAGCTTAGAAAAT GA
Protein sequence (LotjaGi1g1v0257400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQVYRTCTCPHLGSRFMPSSKLLLSLNFTNHFITPSNLPTPKFPSSIAATMSTTVSTQNDTTAQKTHHPVQVAKRLEKFK TTIFTQISTLAVKHGAINLGQGFPNFDGPEFVKEAAIQAIRDGKNQYARGYGVPDLNIAIAERFKKDTGLDVDPEKEVTV TSGCTEAIAATMLGLINPGDEVILFAPFYDSYEATLSMAGAKVKSITLRPPDFAVPIEELRSTISKNTRAILLNTPHNPT GKMFTREELNTIASLCIENDVLVFTDEVYDKLAFDMEHISLASLPGMFERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWG VRQAHAFLTFATSNANQWAAAVALRAPDSYFVDLKRDYLAKRAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHENDVAF CEYLIKEVGVAAIPTSVFYLNPEEGKNLVRFTFCKDEETLRAAVERMKEKLRK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 18 | 18 | - | – | |
| PANTHER | 64 | 448 | 385 | 1.3E-187 | – | |
| PANTHER | 64 | 448 | 385 | 1.3E-187 | – | |
| SUPERFAMILY | 72 | 452 | 381 | 1.18E-105 | ||
| Gene3D | 84 | 447 | 364 | 3.3E-140 | ||
| CDD | 97 | 449 | 353 | 6.25663E-106 | – | |
| Pfam | 97 | 446 | 350 | 1.0E-65 | ||
| Gene3D | 109 | 347 | 239 | 3.3E-140 | ||
| Coils | 437 | 453 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Biosynthetic process | The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. | ||
| Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. |
Expression pattern of LotjaGi1g1v0257400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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