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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0263200 |
| Transcript ID | LotjaGi1g1v0263200.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BTB/POZ domain-containing protein; TAIR: AT1G21780.1 BTB/POZ domain-containing protein; Swiss-Prot: sp|Q9XHZ8|Y1178_ARATH BTB/POZ domain-containing protein At1g21780; TrEMBL-Plants: tr|A0A151TSF1|A0A151TSF1_CAJCA TD and POZ domain-containing protein 2; Found in the gene: LotjaGi1g1v0263200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:64479055..64482242) extracted from Lotus japonicus Gifu genome v1.2.
TTTATTTCTCTATCTCTTTCTTCTCTCTGTATTTACTTGTTCACTCTTTATTCATAAGAGTTCAGTCCCATTTGAAAATG CTGTAGGCACACACAGAGTCCAACTTCAACCTCGTAGCTTCAGTCCTTCACTTTCTCCTCAGCCATGGTTGATGATAGGG TGGATACAATTGGCCGATTAGCACAGTGGAAAGTCGACAACCTAGGACCTTCTTCCTGCAAAAAATCTGAACCGTTCAAG GTCGGACTCTGGAACTGGTACGTATCCCATTTTGAAGAATGTTATTTGAATGAGCTCGAAATCTTCAATTTGGTACCTTT TCCCTCTTTGATTCGCAGGTGCTTTTTGATAATAAGGAATCATCACCTCTTCATACATCTCTATCCAGAACCTTCTAGGG CTTCTAAGGAAAACCCACCTCATGCTCGAATTGTTCTTCGAATTTCCAATGCTGGGGTTGGTTCATCCCGCAAGTTTCAC ATTTCTCCTGGTATGATCTCCAATACCTGATAGATACCCTTCTTCTGTTTTGATCTTGTATTTTGTTTTTACTTTTTGAA TTCACTTTTTATGTGGCTGATATTGGATGTATGCTCATTTTATTTGTAGAAATGGGGCAAAGGCATAAGCTTTTTTTGAA GCACAATTGAAAAGGTTTTGTTTTTTTTAATTGGGTGTGTTTTGGGTTTTAGGATTGGTTTGGTCAATGGTTATCTTTCT CATGGAGATGATTCTGGCTATTGAGGGTCTGGGTTTCTAACTGTGAAATTTCTTTTTTCACATTTGTGCCTACTGCCTAC ATGTAAACTGACAAGAATTTTAGGTCAACCCTCCTGCCCTGCCCCCCATGAATTCAAGTTTGCAACTAAAGATTGTAAAT AAAGAAGTTTGGCATTGCGATTACTTATAGCAGTTTGAAGGTTTATTATGATGTGCTGACACAGATTGTGCATTCGTTTC TGTTTGCTTGTAATGCCACAGTTCAGGAAAAGCTGATTAAGACTGAAGATGACTTTGTTTGGACGGTTGATACTGCTCCC GTTGGCCGCTTCATTATTGATGTTGAGTTTCTAGACCTGAAGATATGCACTATGAAAGTGAGTTCTTTTATTTTTTTATA CGATATTGATGTTGGTGGGTTTGGTGCATACTAGGGGGACAACAAAAACAAAATAACACACTACAAGTGGTTGAGTTATT TGGATAACTTTTGCCGATGTTAGCTGTTTGATGACCAATTTGCAAGACTAACAATTTTGTGTTGTCTTCCAATTGATATG CATCAACATTTATCGGAATATATTTTGTGTTGTGCATTGTTTGTTTTGCCTGCAATAGAGATGGGAAAAAGATAGGCAAG GGTCATAACTCATAAGTCTTTTTCTCTTTTTGTGCTCTGGAGAACATATTGTCCCATAGGTTTAGTGAGTAACAAAGTTT TAGAGTTTTGTGCTAGGCCTCGAACTGTGTTTTGTCCAATACTTAGGCTTTGTTTGAGAGCTTTTAGGGAAGGGGGAAGG GAGGGTAAGCGCTCACTTTGTTTGGAAGTTCAAAATTCCCCAAAACCTCCCATTTGGGGGAACTCAACGAAAATATGAAG GAGAATCTTGGACTTGGAGGGTTTTCATAAATTCCTCAAACAAGGGAAGAGCTTCTCATAAGCCTCCTCTTCCCCTTCCC CCCTACAAACTCACAAGCATAGCCTTAGACTATTTTAATAATCAAACAACATATATTTTTTTTTCGTGTTGTTGTGTCCT TTATATTTAGCAAATCAGATGGACCTTTAGGGTGTGTTTGCGAGTTAAGTTTTGGAGGGGAGAGAAGGGAAGGGAGAGGC TTCCAAGAAGCCCTCCCCTTGTTTGTGAGTTCTTAAGAAGGGCTTATCCTCGCCTTTCAAAAAAAAAAAAGGGCTTATCC TCCTCCCCCTCCCTTATCCTCCCTCCCATTCCCCTTGGGGGTTTTAGACTCCCAAACAGAGAAGGTAAGGGTTTATCCTC CTTGGGGGTTTTATACTCCCAAACAGAGAAGGGCTTATCCTCCTCCCCCTCCCTTACCCTCCCTCCCATTCCCCTCAAAG TCTTCCCCTCCCCTCCCCTCCCCTATAAACTCAGAAATGCACCCTTAATGGTTAAATTAAATATTGTCTTGAGATATATA ATGCTTTCCTAGTACACATCTAACTGTTTAGCCAAGATGCATATGATGTGAACATTATAGTGATTATTCTGGAAGATGAT CTTTTGTTTAGCAACCCATGTAGTGGTTTGAGTTACTTTGTTAGCATATTATGTTCCCCATAAGCTGAATTAGCTGCAAC CTCTGATCTAGATTGAGATTTTTGCTGTTTAACCTTTGGTTTTTTTTTTCTTTTAAACTCAGGGTGAAGAAGCTAGTTCT ATATGGCCATCTGATGGAAATTTGCTATCCGTTGCAGCTCAAAGTAGTTCTCTTCATTGCCTCGCTCACATGTTTGATGA GGCCATACACGCTGACCTAACCATTATCACGGCTGACGGTACATTTAGAGCTCACAAGGCAGTTCGGTCGGCAAGTTCTC CTGTGTTCCAAAGCATGTTTCATCACGACCTGAAGGAAAAAGAGTCATCTACAATCCATATAGAAGACATGTCACTCGAA TCCTGCAAGGCTCTAATCAGCTACTTTTACGGAACAATTAAACAAGAAGATTTTTGGAAACACCGGCTTCCATTGCTCGC AGCAGCTAATAAATATGACATTGGAGGTTTGAAAGGTTGCTGTGAGGAAAGCCTTCTTGAAGATCTTAACTCAGGAAATG TTCTTCAGATGCTAAGTGAGGCTTGGTTTTATCAATTACATAAGTTAAAGAAAGAGTGTATGGTGTTCTTGTTTGAATTT GGTAAAATATATGATGTTAGTGGTGATGAAATGAATACCTTCTTCCAGCATGCAGATAAGGAGTTAATCGTGGAGATGTT TCAGGAGATGCTTACAATTCCGAACCCGGTGTAAGTTAATATTGAAATATTCCTAGCCCCCTGCATTGTGCATAATAGTT CATGATACTTAACTTTCCTTTATCTTCAACAACCTGGTAGTGGTTAAAATGGCACATTAATTGGTATATTATTTAGGAGT TCATGTGCAGGACTATTGACATTTCTAATTGACATTTCCTTATATATATTTTTTCAATTATATATAAA
CDS sequence (LotjaGi1g1v0263200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGATGATAGGGTGGATACAATTGGCCGATTAGCACAGTGGAAAGTCGACAACCTAGGACCTTCTTCCTGCAAAAA ATCTGAACCGTTCAAGGTCGGACTCTGGAACTGGTGCTTTTTGATAATAAGGAATCATCACCTCTTCATACATCTCTATC CAGAACCTTCTAGGGCTTCTAAGGAAAACCCACCTCATGCTCGAATTGTTCTTCGAATTTCCAATGCTGGGGTTGGTTCA TCCCGCAAGTTTCACATTTCTCCTGTTCAGGAAAAGCTGATTAAGACTGAAGATGACTTTGTTTGGACGGTTGATACTGC TCCCGTTGGCCGCTTCATTATTGATGTTGAGTTTCTAGACCTGAAGATATGCACTATGAAAGGTGAAGAAGCTAGTTCTA TATGGCCATCTGATGGAAATTTGCTATCCGTTGCAGCTCAAAGTAGTTCTCTTCATTGCCTCGCTCACATGTTTGATGAG GCCATACACGCTGACCTAACCATTATCACGGCTGACGGTACATTTAGAGCTCACAAGGCAGTTCGGTCGGCAAGTTCTCC TGTGTTCCAAAGCATGTTTCATCACGACCTGAAGGAAAAAGAGTCATCTACAATCCATATAGAAGACATGTCACTCGAAT CCTGCAAGGCTCTAATCAGCTACTTTTACGGAACAATTAAACAAGAAGATTTTTGGAAACACCGGCTTCCATTGCTCGCA GCAGCTAATAAATATGACATTGGAGGTTTGAAAGGTTGCTGTGAGGAAAGCCTTCTTGAAGATCTTAACTCAGGAAATGT TCTTCAGATGCTAACATGCAGATAA
Protein sequence (LotjaGi1g1v0263200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVDDRVDTIGRLAQWKVDNLGPSSCKKSEPFKVGLWNWCFLIIRNHHLFIHLYPEPSRASKENPPHARIVLRISNAGVGS SRKFHISPVQEKLIKTEDDFVWTVDTAPVGRFIIDVEFLDLKICTMKGEEASSIWPSDGNLLSVAAQSSSLHCLAHMFDE AIHADLTIITADGTFRAHKAVRSASSPVFQSMFHHDLKEKESSTIHIEDMSLESCKALISYFYGTIKQEDFWKHRLPLLA AANKYDIGGLKGCCEESLLEDLNSGNVLQMLTCR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 271 | 269 | 1.5E-139 | – | |
| PANTHER | 3 | 271 | 269 | 1.5E-139 | – | |
| Gene3D | 139 | 274 | 136 | 3.8E-29 | – | |
| SUPERFAMILY | 148 | 260 | 113 | 1.96E-21 | ||
| CDD | 154 | 267 | 114 | 1.56197E-20 | – | |
| Pfam | 156 | 260 | 105 | 5.4E-20 | ||
| SMART | 164 | 262 | 99 | 5.7E-16 | ||
| ProSiteProfiles | 164 | 223 | 60 | 15.39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0263200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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