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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0263800 |
| Transcript ID | LotjaGi1g1v0263800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Metal tolerance protein; TAIR: AT3G58060.1 Cation efflux family protein; Swiss-Prot: sp|Q10PP8|MTP4_ORYSJ Metal tolerance protein 4; TrEMBL-Plants: tr|G7IV59|G7IV59_MEDTR Mn-specific cation diffusion facilitator transporter MTP8.1; Found in the gene: LotjaGi1g1v0263800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:64610829..64614666) extracted from Lotus japonicus Gifu genome v1.2.
GATTAACTCTGATTGAAAAAAAATTGACTACTCTCTGTTTTTTGCTACTGTTTGTAACGATGAATGCCTTGATGAACGAG AATTCTGGTCCGAATCCAACAGAGCCGCTGCTGTTCGAGAATGGCGGTGGCAGCACCACCGAAATTGTCGACGACGGTCA GAGAGACGAAGTCAGTCCCCAGAGCACACACAGAGCCGCCTTCTTTGGCTTGCTTCCTCATAAAGTCCGTTCTTGTATAG TAACTGATGGGCCTCCCTTCGACGTCACTGCCTTAAGCGAAGGTATGTATGTATGTTTTTTTTTTTTTTTTTTTTGATGA GATGGTCTTATCTAAGACGGATCCAGAAAATTAATGTTGTTGTGAGGGCATTATATAGCTGTAAATTTGTAATAAAAAAA AATTAACATATATAATTAGAAATATATAATTAGAAGTGATGATATTTTTTACTAAATGAAACATAAGTACTGAAGTAATT TTTTAGTAAATGAGTTATTAAAAACCACGTACTTTTACTACTCAAGTGAGGACATTTGGTAATGTGAGACATAAGTGAGA GCATTTTACAATGTAGGACTCAAGTGAGTGCATTTTTTTACAAAAAAGTCATTTAAAATCACATACTTTTACTACTTAAA TTTTTTTCTAATGATTTATTTAAAATCAAGTGAGGGCATTTCCCCTCATGCTTCCTAACATAGATCCGTCATTCTTACCA CTTGAACGTAACTATTTATGTTTCGTGTGTGTTAATTAATTTATTTATAGGAGAGAAAGAGTATTATGAAAGACAATTCG CTACTCTCAAATCACTTGAGGAAGTGGATGCCATGGTGGAACCTAAACTTGGCAGCAGCATTGTTCAGGAGGAGGAGGAG GAGGAGGAGGATGAAGAACAGGCTCACCAAGAAAGAGCCATGAAGATTTCTAACTACGCAAATCTTGTTCTCTTGTTATT AAAGGTAAGTTCTTCTTCCTCTCAACTGTATGTCTCAAAACAGAGCTTACCCTCCTTCCTCCTTTCTTTCCTTCCCCCTC CCCTTTGTGAGACTTTCTTGAACAATATGTTTTCTTTCATTCATTGATCATTCGTCTCAGTTTGTTTATTCAGAAATTAC TAAAGTTTCTTAGTTTGGCGGCTTCTAACATGTTTGAATAAAGTTATCTTTCTTCATAGTGACACCTAAAAGCTACTCTT TTAAGTTTTTCTTTGGAAATAATTTTAACTTTACAAGTTTGAATTTTTTCTTTAAAAATTGATTTTAACTGCAAATCCAA TTTGGGTGATGTTGAAAAATAGTTTCTAAATTGACATAATCAATTGTGAGAATTTACAATTGGATTTTTCAACATTACCC TACCGAAATCGTTTTTCTTATAAATATATCTAAATATTATAAATTAATTCACTTCCAAATGTATCAAAAATCAATTATAA CAAGAGTGGTCCAAACACTGTGTCACCTATGAGATGAATTATGATAAGATTCGTTTGAAACTAGTCACTACTGAGAATCA ATTTGGACAATATTTTTATTCTTTTATTATTATACTTGCTGATAGATAGGCTCAGTTGAATGACTTTCTGAATTTTGGGG CTTTTCATTTGAAATATATGTTCAAGTGACTCTGTACTTTTTGTGCAATAACTATACATATAAATCCATATTGTGTCTAG ATTTATGCCACAGTAAGGAGTGGTTCAATGGCCATTGGAGCATCAACTCTGGATTCTTTGCTTGATCTCATGGCTGGTGG CATACTTTGGTTCGCTCACGTGTCAATGAAGAACATCGATATCTACAAGTACCCCATTGGAAAGCTTAGGGTGCAGCCAG TGGGCATACTTGTCTTTGCCGCTATCATGGCAACACTTGGTTCGTCGAACTCACTTTAACTATTCCTATTCCCGGTGCAT CAAAGCTCCCGCAGTGCATGGGATCAATATTGAAAAGAATTTGTAAAATGAGTTGTAGGCTTTCTAATAAAGTTTGAATA AAGCATACAGATTTTGGTTATAGCTGTTGACATGTTATTTTCAGAATTTCTAAAATGTGCGACATACAAGAAATCTTTAG GCTAAGTTAGGTGCATAAGTTTCTTTTATTTGTTTGATCATATATCAGAAGATTCTATTATACCAAAGAATGTTATACCT TACATAGATTACTTGGCTTTTGCCTCAGAAAATTGACAGCAGAGAGCATTTAGTCATATTAGCCTGAATTAGAGAACTAG AACTTGATTTTACTAATCAAAGTGCTGGATTAAAAACAATGAACTTCAGCTTATTGATGTCTACGTTCAAATTATGTACA TTTTGGTATACCTTATAGTTTTCAGGAACTTGTTTTCTTAGAAATCATCAAAATTATATACATTGACATTCAGAAGATTC CATAATACATAGAATCTATTTTTCTACAGGCTTTCAGGTGTTAATCACAGCCTTACAACAACTAATAGAGGACAAGCCGA GTGAAAAGATGTCTGCAGAGGAATTAATATGGCTGTGCTCTGTCATGATATTCGCGACGGCGGTGAAGCTTATTCTCTGG CTTTACTGTAGAAGCTCAGAGAACAAGATTGTTCGTGCCTATGCAGATGATCACCACTTTGATGTTATAACAAATGTGGT TGCATTAGTCGCGGCTGTTCTTGGCAATAAGTTTTTCTGGTGGGTTGACCCGGCAGGAGCTATTCTGCTTGCGCTATATA CGATTTCAAATTGGTCTCGCACTGTAATGGAAAATGCAGGTAAATCGTTATCATCATAAGCTTGATTAGCACATTAGCAA TATCTAGTTCCTAGTGTTTCTGTTGGGAAATCAGATGATAAATCAGTTTTCTTCCAGGAAGCACAACCCATATTAGTCCT AAAGTGTAGATTTCTTTGACCTCTTAGAGGGTAATCATTTCTACCATTGATTTAAAGTCAAAATCAATTCCGGGGAGAAA TTTTAATGAGTAGATTCTGAGAAAAAATAAACTGATTCAAACATGCTATTACTTTCACGGCTTCCACTTGATCTCTTAAC TTCTTTAAGTACTAATGTCAGTCAAAGGCAAAAGAAGTTTTCAAAATTATTTGCTGTTTGTAAACAAATTTGTGTTTCAG TTCTGATTCTTAGACTACTTTCTATGTCCAGTTTCACTAGTAGGACAATCTGCATCTCCTGAAGTTTTGCAGAAGTTGAC ATATCTCGCTCAAAGTCACCCTAGCATCAAGCGTGTAGACACTGTCCGCGCATACACATTTGGGGTTCTATATTTTGTGG AGGTACCTTGTTCACCAAAATACAAACTTGTTTTTTTTTTCTGTAATACCAAACTACAAATCTATATAAAACAATCTCTT GTTTTTTGGAGCAGGTTGACATTGAACTGCCAGAAAATTTACCCTTGAAAATAGCGCATACCATTGGAGAGACTATGCAG ATTAAGATTGAAAAGCTTCCGGAGGTTGAGCGTGCATTTGCTCATCTAGACTTTGAGTGTGATCACAAACCAGAGCACTC AGTTCTCAGAAAACTGCCCAACAATCAGCCCTAAGCACATTTTGAAGCTCCATGCTGTGACGCCCAAACTTGTGATGAAA ACCTCTTTTTTTTATTTATGAAAATGTAAGACTTAATATTTCTCAAAGTTACAACTTTAGTAAGAACCTTCATGAATCAT TACATGTACATTTAGGAAACAAATCTAAAATGATGCATGCTCCTGAGTAAAAATATGCAGAAGCGTTAAAAAGGATGGAG TGTTTTTTTGTTATTTTTCATTGACCACTTAAGAAAATACATTTAGATGAACAAATGAATTAAAAATATACAGCAATT
CDS sequence (LotjaGi1g1v0263800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATGCCTTGATGAACGAGAATTCTGGTCCGAATCCAACAGAGCCGCTGCTGTTCGAGAATGGCGGTGGCAGCACCAC CGAAATTGTCGACGACGGTCAGAGAGACGAAGTCAGTCCCCAGAGCACACACAGAGCCGCCTTCTTTGGCTTGCTTCCTC ATAAAGTCCGTTCTTGTATAGTAACTGATGGGCCTCCCTTCGACGTCACTGCCTTAAGCGAAGGAGAGAAAGAGTATTAT GAAAGACAATTCGCTACTCTCAAATCACTTGAGGAAGTGGATGCCATGGTGGAACCTAAACTTGGCAGCAGCATTGTTCA GGAGGAGGAGGAGGAGGAGGAGGATGAAGAACAGGCTCACCAAGAAAGAGCCATGAAGATTTCTAACTACGCAAATCTTG TTCTCTTGTTATTAAAGATTTATGCCACAGTAAGGAGTGGTTCAATGGCCATTGGAGCATCAACTCTGGATTCTTTGCTT GATCTCATGGCTGGTGGCATACTTTGGTTCGCTCACGTGTCAATGAAGAACATCGATATCTACAAGTACCCCATTGGAAA GCTTAGGGTGCAGCCAGTGGGCATACTTGTCTTTGCCGCTATCATGGCAACACTTGGCTTTCAGGTGTTAATCACAGCCT TACAACAACTAATAGAGGACAAGCCGAGTGAAAAGATGTCTGCAGAGGAATTAATATGGCTGTGCTCTGTCATGATATTC GCGACGGCGGTGAAGCTTATTCTCTGGCTTTACTGTAGAAGCTCAGAGAACAAGATTGTTCGTGCCTATGCAGATGATCA CCACTTTGATGTTATAACAAATGTGGTTGCATTAGTCGCGGCTGTTCTTGGCAATAAGTTTTTCTGGTGGGTTGACCCGG CAGGAGCTATTCTGCTTGCGCTATATACGATTTCAAATTGGTCTCGCACTGTAATGGAAAATGCAGTTTCACTAGTAGGA CAATCTGCATCTCCTGAAGTTTTGCAGAAGTTGACATATCTCGCTCAAAGTCACCCTAGCATCAAGCGTGTAGACACTGT CCGCGCATACACATTTGGGGTTCTATATTTTGTGGAGGTTGACATTGAACTGCCAGAAAATTTACCCTTGAAAATAGCGC ATACCATTGGAGAGACTATGCAGATTAAGATTGAAAAGCTTCCGGAGGTTGAGCGTGCATTTGCTCATCTAGACTTTGAG TGTGATCACAAACCAGAGCACTCAGTTCTCAGAAAACTGCCCAACAATCAGCCCTAA
Protein sequence (LotjaGi1g1v0263800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNALMNENSGPNPTEPLLFENGGGSTTEIVDDGQRDEVSPQSTHRAAFFGLLPHKVRSCIVTDGPPFDVTALSEGEKEYY ERQFATLKSLEEVDAMVEPKLGSSIVQEEEEEEEDEEQAHQERAMKISNYANLVLLLLKIYATVRSGSMAIGASTLDSLL DLMAGGILWFAHVSMKNIDIYKYPIGKLRVQPVGILVFAAIMATLGFQVLITALQQLIEDKPSEKMSAEELIWLCSVMIF ATAVKLILWLYCRSSENKIVRAYADDHHFDVITNVVALVAAVLGNKFFWWVDPAGAILLALYTISNWSRTVMENAVSLVG QSASPEVLQKLTYLAQSHPSIKRVDTVRAYTFGVLYFVEVDIELPENLPLKIAHTIGETMQIKIEKLPEVERAFAHLDFE CDHKPEHSVLRKLPNNQP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 126 | 126 | - | – | |
| MobiDBLite | 1 | 42 | 42 | - | – | |
| PANTHER | 5 | 413 | 409 | 5.8E-197 | – | |
| PANTHER | 5 | 413 | 409 | 5.8E-197 | – | |
| Coils | 105 | 125 | 21 | - | – | |
| SUPERFAMILY | 120 | 320 | 201 | 1.15E-38 | ||
| Gene3D | 121 | 319 | 199 | 8.7E-27 | ||
| TIGRFAM | 122 | 398 | 277 | 1.0E-32 | ||
| TMHMM | 127 | 144 | 18 | - | – | |
| Pfam | 127 | 319 | 193 | 4.1E-28 | ||
| Phobius | 127 | 144 | 18 | - | – | |
| Phobius | 145 | 149 | 5 | - | – | |
| TMHMM | 149 | 171 | 23 | - | – | |
| Phobius | 150 | 171 | 22 | - | – | |
| Phobius | 172 | 191 | 20 | - | – | |
| Phobius | 192 | 211 | 20 | - | – | |
| TMHMM | 192 | 214 | 23 | - | – | |
| Phobius | 212 | 230 | 19 | - | – | |
| TMHMM | 229 | 251 | 23 | - | – | |
| Phobius | 231 | 251 | 21 | - | – | |
| Phobius | 252 | 270 | 19 | - | – | |
| Phobius | 271 | 291 | 21 | - | – | |
| TMHMM | 272 | 291 | 20 | - | – | |
| Phobius | 292 | 418 | 127 | - | – | |
| Gene3D | 320 | 399 | 80 | 9.9E-10 | ||
| SUPERFAMILY | 322 | 400 | 79 | 1.83E-13 | ||
| Pfam | 325 | 398 | 74 | 9.8E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cation transport | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Cation transmembrane transporter activity | Enables the transfer of cation from one side of a membrane to the other. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0263800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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