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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0272100 |
| Transcript ID | LotjaGi1g1v0272100.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GRAS family transcription factor; TAIR: AT1G21450.1 SCARECROW-like 1; Swiss-Prot: sp|Q9SDQ3|SCL1_ARATH Scarecrow-like protein 1; TrEMBL-Plants: tr|A0A151TS87|A0A151TS87_CAJCA Scarecrow-like protein 1; Found in the gene: LotjaGi1g1v0272100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:66618200..66619969) extracted from Lotus japonicus Gifu genome v1.2.
AAATTTCTGTCTAAACTGAATGACAGGCGAACCAGAACCATGTCATTAGTTAGATCTTCTGAGCTTACTCCTACATCATG TAAAAATGCTAAGCTCTACTCACTAAAGGGAACTGATATTAATCATAGAAGCATGTATACCACCGATACTTACTCCAGTG AGAGTTACGAGAAGCACTTCCACGACTCACAAACAGAACAGATAGAACCATCTTGTTGCAGCATGTCTAGCAGTTCAATT CACACTGATGGTGCCTCTTCTTGCCAGATTAGAGCTAGTTCAGGTATGGTTGCTAATAACCCCTTTGATGCTTCTTTAAT TCCTATGAGGCATCATGATGCTTATCAGTCCACCTTTGGATCAGATTTGTTGGAAAATGGAAGCCTGGATTCACCTGATG ATGATAGTCTCATGAAATTAAAACTACAAGCATTGGAGAGGGCATTGCTTGTTGATAGTGATGCTGAGGCGGAGGAGGAG GAAGACGATGTGTTTGAGACTGTGCAAAGCATGGAAATAGATCATGACATTTCTGAGTGGGCTGATCCCATTCAGAATAT GAAGCTCCATGACTCGCCAAAGGAGTATTCTTCTTCATATTCCAATATTACCAGCATCAGTAGCACCAAAGATATATCGC AAATTTCTCGGACCCCCAACCAACTGCTTTATGAATGTGCTATTGCACTTTCAGAAGGAAATGAAGAGGAAGCTTCATCA ATGATAAATGATCTCCGAAAGATGGTCTCAATTCAGGGAGAGCCTTCCAAAAGAATTGCAGCCTATATGGTGGAAGGACT GGCCGCTCGCCTGGCTGAATCCGGCAAGAGTATTTATAAAGCTCTAAGATGCAAAGAACCTCCTTCTGCGGACCGTCTTG CAGCAATGCAGATACTGTTTGAGGTTTGCCCATGTTTTAAATTTGGATTCATTGCTGCTAACAATGCAATCACAGAGGCA GTTAAAGATGACATGAACATTCATATAATAGATTTTGACATCAATCAAGGAAGTCAGTACATAAGTCTAATTCAAACACT TGCTTCAAGGTCCAATAAGCCATCCCGTGTGAGGTTGACCGGAGTTGATGATCCCGAGTCGGTGCAGCGATCCGTTGGAG GCCTAACAATCATAGGACTAAGACTTGAGAAACTGGCGGAAGCACTTGGTTTGCCATTTGAGTTCCGAGCAGTGGTGTCG AGGACTTCCATTGTCACCCCATCAATGCTCAGTTGTCGTCCCGGAGAAGCTCTTGTCGTTAACTTTGCATTCCAGCTTCA TCACATGCCTGATGAGAGTGTTTCAACAGTAAATGAGCGGGACCAGCTTCTCCGCTTAGTAAAGAGCCTGAATCCGAAGC TTGTAACGGTTGTGGAGCAAGATGTGAACACTAACACCGCCCCCTTCTTGCAGAGATTTGTTGAAGCCTACAAGTACTAC TCTGCTGTGTTTGAGTCACTTGATATTACTCTTCCTAGAGAGAGTCAGGACAGGATGAATGTTGAAAGGCAGTGCTTAGC GAGGGACATTGTCAATGTGGTTGCGTGCGAAGGTGAGGATAGGATCGAAAGGTATGAAGTTGCAGGGAAATGGAGAGCAA GGATGACAATGGCTGGCTTCACTCCATCCCCAATGAGCGCAAATGTCGGCGATGAAATCAGGAAACTCATTAAGTTGTAC TGTGACAGGTACAAGATAAAGGAGGAAATGGGTGCACTTCATTTTGGTTGGGAAGACAAAAACTTGATTGTTGCTTCAGC ATGGAGATGA
CDS sequence (LotjaGi1g1v0272100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCATTAGTTAGATCTTCTGAGCTTACTCCTACATCATGTAAAAATGCTAAGCTCTACTCACTAAAGGGAACTGATAT TAATCATAGAAGCATGTATACCACCGATACTTACTCCAGTGAGAGTTACGAGAAGCACTTCCACGACTCACAAACAGAAC AGATAGAACCATCTTGTTGCAGCATGTCTAGCAGTTCAATTCACACTGATGGTGCCTCTTCTTGCCAGATTAGAGCTAGT TCAGGTATGGTTGCTAATAACCCCTTTGATGCTTCTTTAATTCCTATGAGGCATCATGATGCTTATCAGTCCACCTTTGG ATCAGATTTGTTGGAAAATGGAAGCCTGGATTCACCTGATGATGATAGTCTCATGAAATTAAAACTACAAGCATTGGAGA GGGCATTGCTTGTTGATAGTGATGCTGAGGCGGAGGAGGAGGAAGACGATGTGTTTGAGACTGTGCAAAGCATGGAAATA GATCATGACATTTCTGAGTGGGCTGATCCCATTCAGAATATGAAGCTCCATGACTCGCCAAAGGAGTATTCTTCTTCATA TTCCAATATTACCAGCATCAGTAGCACCAAAGATATATCGCAAATTTCTCGGACCCCCAACCAACTGCTTTATGAATGTG CTATTGCACTTTCAGAAGGAAATGAAGAGGAAGCTTCATCAATGATAAATGATCTCCGAAAGATGGTCTCAATTCAGGGA GAGCCTTCCAAAAGAATTGCAGCCTATATGGTGGAAGGACTGGCCGCTCGCCTGGCTGAATCCGGCAAGAGTATTTATAA AGCTCTAAGATGCAAAGAACCTCCTTCTGCGGACCGTCTTGCAGCAATGCAGATACTGTTTGAGGTTTGCCCATGTTTTA AATTTGGATTCATTGCTGCTAACAATGCAATCACAGAGGCAGTTAAAGATGACATGAACATTCATATAATAGATTTTGAC ATCAATCAAGGAAGTCAGTACATAAGTCTAATTCAAACACTTGCTTCAAGGTCCAATAAGCCATCCCGTGTGAGGTTGAC CGGAGTTGATGATCCCGAGTCGGTGCAGCGATCCGTTGGAGGCCTAACAATCATAGGACTAAGACTTGAGAAACTGGCGG AAGCACTTGGTTTGCCATTTGAGTTCCGAGCAGTGGTGTCGAGGACTTCCATTGTCACCCCATCAATGCTCAGTTGTCGT CCCGGAGAAGCTCTTGTCGTTAACTTTGCATTCCAGCTTCATCACATGCCTGATGAGAGTGTTTCAACAGTAAATGAGCG GGACCAGCTTCTCCGCTTAGTAAAGAGCCTGAATCCGAAGCTTGTAACGGTTGTGGAGCAAGATGTGAACACTAACACCG CCCCCTTCTTGCAGAGATTTGTTGAAGCCTACAAGTACTACTCTGCTGTGTTTGAGTCACTTGATATTACTCTTCCTAGA GAGAGTCAGGACAGGATGAATGTTGAAAGGCAGTGCTTAGCGAGGGACATTGTCAATGTGGTTGCGTGCGAAGGTGAGGA TAGGATCGAAAGGTATGAAGTTGCAGGGAAATGGAGAGCAAGGATGACAATGGCTGGCTTCACTCCATCCCCAATGAGCG CAAATGTCGGCGATGAAATCAGGAAACTCATTAAGTTGTACTGTGACAGGTACAAGATAAAGGAGGAAATGGGTGCACTT CATTTTGGTTGGGAAGACAAAAACTTGATTGTTGCTTCAGCATGGAGATGA
Protein sequence (LotjaGi1g1v0272100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLVRSSELTPTSCKNAKLYSLKGTDINHRSMYTTDTYSSESYEKHFHDSQTEQIEPSCCSMSSSSIHTDGASSCQIRAS SGMVANNPFDASLIPMRHHDAYQSTFGSDLLENGSLDSPDDDSLMKLKLQALERALLVDSDAEAEEEEDDVFETVQSMEI DHDISEWADPIQNMKLHDSPKEYSSSYSNITSISSTKDISQISRTPNQLLYECAIALSEGNEEEASSMINDLRKMVSIQG EPSKRIAAYMVEGLAARLAESGKSIYKALRCKEPPSADRLAAMQILFEVCPCFKFGFIAANNAITEAVKDDMNIHIIDFD INQGSQYISLIQTLASRSNKPSRVRLTGVDDPESVQRSVGGLTIIGLRLEKLAEALGLPFEFRAVVSRTSIVTPSMLSCR PGEALVVNFAFQLHHMPDESVSTVNERDQLLRLVKSLNPKLVTVVEQDVNTNTAPFLQRFVEAYKYYSAVFESLDITLPR ESQDRMNVERQCLARDIVNVVACEGEDRIERYEVAGKWRARMTMAGFTPSPMSANVGDEIRKLIKLYCDRYKIKEEMGAL HFGWEDKNLIVASAWR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 26 | 575 | 550 | 0.0 | – | |
| PANTHER | 26 | 575 | 550 | 0.0 | – | |
| ProSiteProfiles | 197 | 576 | 380 | 95.695 | ||
| Pfam | 208 | 576 | 369 | 2.8E-134 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0272100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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