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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0272500 |
| Transcript ID | LotjaGi1g1v0272500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Bidirectional sugar transporter SWEET; TAIR: AT1G21460.1 Nodulin MtN3 family protein; Swiss-Prot: sp|Q8L9J7|SWET1_ARATH Bidirectional sugar transporter SWEET1; TrEMBL-Plants: tr|I3S236|I3S236_LOTJA Bidirectional sugar transporter SWEET; Found in the gene: LotjaGi1g1v0272500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:66805768..66809393) extracted from Lotus japonicus Gifu genome v1.2.
CCACATGTCTCATGTTGATGTCATGTGCTGAAGCATCTACATTCATTTGGGTTGTATGCATACATATGATTCTCAATTGG AGAACAGTTTTGAGCATCATATCCCACATTTAACCTTGCACTTGCTTCATCTTTCCTATATAAACCCACTAACTTAGAAT TGTACTCTTCAAGCATCTTCTAGCCTTTTAGCATTTCCAAAGAAACAGGGATAATTTGAGCACTGATACTCTCTCAGACA TATCTTCATACACTTCAAAGGAAGAGGAAAAAAAGGGTTCAAGGCCATGGATATCCCTCGTTTTGTGTTTGGCATATTTG GTAGGTTAACCATCTCTTGTAGATTGTACTGTTGTTTTTTGAGCAATAGATTTCTTTTTGTTATAAAAAAACATCCTCTA TGAACTTTCTCCTGTTACATGTGTTTTCTTTCTCATGTGTGTCTTCTGTTGGAAGCTCTTCTTCTCTAGGATTATTTACT TCTGGACTTGTACTTCATCTGTTTCTCCTTAATGGTTCTCTTCTTTGTTGGTACAGGGAATGCTTCTGCTCTGTTCCTCT TCTTGGCACCAGTGTATGCATCACACATTCCTCCTTCACTTTCTATCACATAGATATCAAGATGTTATGGTTTTGGTCTT CTGTTTTATGGTTCAAACTGCAAAGGGGCTTACATGGACCCTGTTAAGCTTTTCCATTTTTTTTTCAAATTATAAACTTC CCCAACATAATTTACTAGATCATTTTTCCTTCATCAGAACTAATGCTGAAATTCAAAAACTACTCAGAAAAATTTCTCTC AATAGTTGATACCAACTTTAAAATCATTTATAGAAGAATTTCCAAACGCTTACGATGCTGAGCAATTCAATAAGGTCTGC ATATATGTGCATAAAATCAGTAATTTAGTAGTAAATGTAGAATAGTGCCAAGATTGAATGAAAATTGTGACAATTTTGGG TTTGTAGGATCACATTCAAGAGGATTATAATCAACAGATCCACAGAGAACTTCTCGGGCATTCCTTATGTGATGACACTG CTCAATTGTCTCCTTTCAACTTGGTGAGCTTCTAACTTACACTTTTCATTTTAATAGTTTTCATCACACCTTATCCATCT CTAGATTTAGAAAGAGATATGAAGTAATGAAAGATAATGGACTCGGCGAGACCCCAGGGTCTCTCGCCCATGAGCACTAG TTTAGGGCGACGAGCGGACCAGGGACTTGGGCCTCCTCCCAGAGGCCCAAGCGGCCCATTAGGAAGGGATAAAGGCGCCA AGCCCAACTCCACATCTATAAATAGGGGATGAATACTAATTGTAAGAGACTCTCAGCTCATTTGTGAAATAACAAGATTG AAATTCAGTTACCTTCTCTCTCTAAAGCGGTTACTCTCATTCTCTCTAGAAATCTCGCATCACGTTCCTTACACTCTAGG TATTATACATCATCTCAATGTTCATGGATAGAACAGATAAATAAATAAGGTGTTGAGTTATGTGATATAAAAATAAGAGC TAAATAGGAAAAAAAAAATTGGTGGAAAAAAGGGAAGATGAAAATAAGGGGTTAATATATCAAAGTTGAATTACTGCATA TTTGCTTGCTATATCTTTTATTTACTTTTATTTAACTTAATTTTAAATTTATGTATATTTGGATTAATTTTCTTCCCTCA TGAAGATTCTAACTAACTAAGAAGAGAAAGCTTCTGGAATTGTGTTTGGCTTCAAAATTAGAGTCCGAGTGATTTACTAC TCGGAAGTTAAAAGTAAAAAAATAACACATTTTGATATACTTTTAGCGCCTATACTTTTTATTGAAGTAACTACATCACG AGATGTTCTTTTTCCCCTTTTTTATGATAAACCAAATGGTTTCTAAAATGTAGAAGAGTTTTCAAATATATACATGGATT ATTTCTATGAGTTGGCACACGTTTGAAAACTCTTCTAGGATTTGATTGATTTTGAAGACATAATTAACTCTGACGAGAAG CTTCAATGAGTAGTTTCTAGGTCTCGATAGTTTAATAAGTGATTTTTGTATTTCTAATCTGTTATGATTTTTACAATGCA TAGGTATGGTCTACCTTTTGTGTCTCCAGACAACATCCTATTATCAACCGTGAATGGCACAGGAGCTGTGATTGAAATTG TTTATGTTTTGATCTTCATCACATTTGCACCCAAGAAGGAAAAGGCTAAAATTCTTCGCCTCTTCACCTTTGTACTCTTG GTTTTCTCTGCTGTTATTTTTGTGTCCCTTTTTGCCTTGCATGGAAATTCTAGGAAGCTCTTCTGTGGCTTCGCCGCCGC CATATTCTCCGCCATCATGTATGGCTCGCCACTCTCAATTATGGTAACCCAACCTTCCAACTCATTGAATCTTTGCGTTC CCTCATTATGCCCTGCTCTGCTAATGAAAAGATTAATCATGGACAACCAAAAGAAATAGAATAAAAAGATGAGGGGCAGA AATTTAACCTTAAAATAAAATTAGTCACTTAAAAAAAGGTCGTCTCTGCTTATTTTCATAAAATTAGCCAATTATGTGCT TTTTTAGCTGTTTGTTTATGTTTTTTTTATCAAAACCAAAATTTGAAAATAACCAGAAATCTACTTATTTCTCTAAGCTA TTCTTAGCAGCTTTTGAAATAATCAACTTCTAGTGAAGTGAAAAACATTTTTTTATTTGTAATTAATCAAAAATCAATTA TACTTTTCAAATAATCACTTTAAATAAAACCAATTTCTAATTCAACTTTAAAATTTCGTATTTTTTAAGAAGACACAAAT GAGTCCATGGTATAAAATTTTTATGACGGCAAAAATAACATTTAAATAATATTCTCCTAACAAAAATTTACTAGTTGATT GTGGATTTGAAACCATGTGCAGAGACTAGTAATCAGAACTAAGAGTGTGGAATTCATGCCCTTCTTCCTATCCCTGTTCG TGTTCCTCTGCGGCACTTCCTGGTCCATCTTTGGTTGGCTAGGCCATGACCCTTTTGTTGCTGTAAGTTACTTTGCAATT TTAATTCAGAAGTTCATTTTCTATATAGCCAATGAAGTATGAAGCAGAACAGATTCAGGGTCAGCAATGTTATTTTTTTT TCTATTTTTTTTTCAGGTACCTAATGGTCTTGGTTCTGTTTTGGGAACAATGCAATTAACATTGTATTTCATATACCGGG ACAAGAAAGGTGTTCCAAGGAAGCAGGAGGCCACAACAGAGGAGGATTCCATGGAGACAGGACATGCAAAACCTCATCAA GAAAAGCAATCCAATGCAAATGGAGCTCAAGCATGAGAATGGTTTAACTCAAATCAATAGTCAAAACTCAAAACTAGAGT TACTTGCCAGCTACATATAACGAAAGCAAGCAAGCCGAATCATATAGTACAATGTTTCTGAATTCATTTTCAAAATCAAT TTTGAGGAGAAATTTTTATAAGAAGTTACTGAGTGTCTGAATTGATTCTAAGGAAAGAGTACTGGAGATGTATTTCAGAG AATGAAGAAAGTGAGTTCATTCATTAACTCACGAAAGTGAAGTACCGGCTTATATAAGCTGGTCAGAACTGAAAAACTAA CTACCATTAATACAAAATGAAGGCAG
CDS sequence (LotjaGi1g1v0272500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATATCCCTCGTTTTGTGTTTGGCATATTTGGGAATGCTTCTGCTCTGTTCCTCTTCTTGGCACCAGTGATCACATT CAAGAGGATTATAATCAACAGATCCACAGAGAACTTCTCGGGCATTCCTTATGTGATGACACTGCTCAATTGTCTCCTTT CAACTTGGTATGGTCTACCTTTTGTGTCTCCAGACAACATCCTATTATCAACCGTGAATGGCACAGGAGCTGTGATTGAA ATTGTTTATGTTTTGATCTTCATCACATTTGCACCCAAGAAGGAAAAGGCTAAAATTCTTCGCCTCTTCACCTTTGTACT CTTGGTTTTCTCTGCTGTTATTTTTGTGTCCCTTTTTGCCTTGCATGGAAATTCTAGGAAGCTCTTCTGTGGCTTCGCCG CCGCCATATTCTCCGCCATCATGTATGGCTCGCCACTCTCAATTATGAGACTAGTAATCAGAACTAAGAGTGTGGAATTC ATGCCCTTCTTCCTATCCCTGTTCGTGTTCCTCTGCGGCACTTCCTGGTCCATCTTTGGTTGGCTAGGCCATGACCCTTT TGTTGCTGTACCTAATGGTCTTGGTTCTGTTTTGGGAACAATGCAATTAACATTGTATTTCATATACCGGGACAAGAAAG GTGTTCCAAGGAAGCAGGAGGCCACAACAGAGGAGGATTCCATGGAGACAGGACATGCAAAACCTCATCAAGAAAAGCAA TCCAATGCAAATGGAGCTCAAGCATGA
Protein sequence (LotjaGi1g1v0272500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDIPRFVFGIFGNASALFLFLAPVITFKRIIINRSTENFSGIPYVMTLLNCLLSTWYGLPFVSPDNILLSTVNGTGAVIE IVYVLIFITFAPKKEKAKILRLFTFVLLVFSAVIFVSLFALHGNSRKLFCGFAAAIFSAIMYGSPLSIMRLVIRTKSVEF MPFFLSLFVFLCGTSWSIFGWLGHDPFVAVPNGLGSVLGTMQLTLYFIYRDKKGVPRKQEATTEEDSMETGHAKPHQEKQ SNANGAQA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 243 | 243 | 2.2E-126 | ||
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 243 | 243 | 2.2E-126 | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 6 | 27 | 22 | - | – | |
| Gene3D | 6 | 104 | 99 | 4.3E-8 | – | |
| Pfam | 7 | 94 | 88 | 4.4E-19 | ||
| Phobius | 28 | 38 | 11 | - | – | |
| Phobius | 39 | 59 | 21 | - | – | |
| TMHMM | 40 | 62 | 23 | - | – | |
| Phobius | 60 | 70 | 11 | - | – | |
| TMHMM | 67 | 89 | 23 | - | – | |
| Phobius | 71 | 90 | 20 | - | – | |
| Phobius | 91 | 101 | 11 | - | – | |
| TMHMM | 102 | 121 | 20 | - | – | |
| Phobius | 102 | 122 | 21 | - | – | |
| Phobius | 123 | 127 | 5 | - | – | |
| Gene3D | 126 | 224 | 99 | 9.2E-17 | – | |
| Phobius | 128 | 148 | 21 | - | – | |
| Pfam | 131 | 213 | 83 | 4.3E-24 | ||
| TMHMM | 131 | 153 | 23 | - | – | |
| Phobius | 149 | 159 | 11 | - | – | |
| TMHMM | 160 | 182 | 23 | - | – | |
| Phobius | 160 | 182 | 23 | - | – | |
| Phobius | 183 | 187 | 5 | - | – | |
| TMHMM | 187 | 209 | 23 | - | – | |
| Phobius | 188 | 209 | 22 | - | – | |
| Phobius | 210 | 248 | 39 | - | – | |
| MobiDBLite | 215 | 236 | 22 | - | – | |
| MobiDBLite | 215 | 248 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Sugar transmembrane transporter activity | Enables the transfer of a sugar from one side of a membrane to the other. A sugar is any member of a class of sweet, water-soluble, crystallizable carbohydrates, which are the monosaccharides and smaller oligosaccharides. |
Expression pattern of LotjaGi1g1v0272500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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