Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi1g1v0276000 |
Transcript ID | LotjaGi1g1v0276000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Dof zinc finger protein; TAIR: AT3G52440.1 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp|Q9SVC5|DOF35_ARATH Dof zinc finger protein DOF3.5; TrEMBL-Plants: tr|G7J664|G7J664_MEDTR Dof domain zinc finger protein; Found in the gene: LotjaGi1g1v0276000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:67480220..67484825) extracted from Lotus japonicus Gifu genome v1.2.
CTTTGACTTATCAACCTCAATGACAATCACCAATCAAGAAACGCCACATGAGAGATTGAATTTGGACACGCCCCATCCGC CTATGAAACAGCACACCACAACACATGAAATGTTCACATCAATCAATCAACATCACAAGCTCTCACACACATAAACACTC CCAAAATCCACATGCATGCTCACCACCCTTCCTTAATTTTAACGATTCCCCAACCGCCCACGTTCGCTTTCCCCACACAC ATGTTTTCATTCATACACCAACATAACATTATATCTTTCCCTCCCCACAATGCACTCTCTCTTACTACTACTACTCTAAC TCTCAACTCTCTCAATTTTCCATTATCACATTACACCTACCTCATCTTCCCCAATCTAAATAAATGTTCCAACAAAAACA TCATACTAACGGGCTAGACCAAATGTTTCTTCATCAGTTCCCATCTTCTTGTTCTTCTATGCAACTCCCAACCTCAATGG AGCGGTCAAGTTCATCAAGGTGGAAGCCCCACATCGAGGTTGCTCCCAATTGCCCTCGCTGCGCTTCCACCAACACCAAA TTCTGTTACTACAACAACTACAGCTTGTCCCAGCCGCGGTACTTCTGCAAAGGCTGCCGCCGCTACTGGACCAAAGGCGG CTCTCTCCGCAACGTCCCTGTAGGGGGCGGATGCAGAAAGAGCCGCCGCGTGAGGTCCTCCGCGTCAAGGCACCTTCAAA GCGAACGCCTTTCTTCATCAATTGGTGGTAGTGGTGATGGTGATCAACACGGAGGCCAAACCAATGGGTCACGTGACATT GACATGGCGCTCGTGTTCGCGAAATTCTTGAACCAAGACACGAGCTCTGGTGAGGAATTTGATAGAGAGGGTAACAACCG GTCGTCGTCTTTGACACCGGAAAGTGTGGAGCTGCCTCAGAAGCAGCTCTCTGATGCTGAAGCTGATTCTGATGCTGATG CGATGATGGTAGTGGGTGGTGGGGACCACCTTCTTGTTGGTGATGAGTTGAGTTTGAGTGGGATTGATGAGTTGGAGGGT TTTCTTGGTGGTGACGATAATGATGTGGTCCATGATGCTTTGTTTTCTGATACTACCTTGTCTGCTTCCTCCATTACCTG GCAGACACCGATGATCGAAAAGCAGTCGTTGGAGTTGGAGTTGGAGTACTCTATGCCATTCAATGAGGATTGTATTGGAA GTCATGATCAATTGTTACCGGTTAGTTCAGCTTCTAGTACAATGAATTTAATTAGCGACAGTTGGGCTACTTGGAATTCC TTTGATCTTTCAACCATGGAAGTTTTCTCATCAAGACCTTGACCAATTCTTATTTAATTAGATCTGGTTTCCACATAATT ATTATACTTTTCATTTGTAAGTTTTACTTTTCTTCCTATTATTTGAAAGAAGAGAACAAAAACGGAGAGAACTATTCTTA CTATGTGCCAATATTATGAGGAGGGGAGACTTAGAATGTTATAGAACATTATTTATATGTTTAACAGTTATACATAGAAT AAAATTGTACTTCTGCTGGCTGCATATAATCCATTGATTGGAAATGTAGTTCCAAAAGATTTACTGATCTGATGTTGTAG TCGAGTGAAAATCTTCTGTCCTTGTTCCCTGTCCTCTTTCCTGTCCTGCGAATTAGAACGTGACACCTGTATTAGTTTGC CATGTAAGCTTTAGTTAATTTTGACGTCTCTGTTAACACAAGGTCAATTCCGTTACCCTTTTCAATCCCCTGTGATATCG GCGCAGCTTCTTTCGCCGTCCGTTCTTGTTTATCATCTGCATTATTCTGACTATTGCATCCAAGAATGACATGAATCACA TGTAACAACCCTTCATCGTTTCCTGCAAGCACACTATAGAGTAGTCTGAAATCCAAAATGATGAATTAGTCATCTTCCAG GGATTTCATGCATTTTCTATAATTGGAGCATTTTCACAAACACCTTGTAAGCAGCTCCAAGACCCATCCAGATCAAACAT AATTATCCATTCATACGCCCAAGTGAATACAGCTATTTTTTTAACACAATCTATCTAATTGTAACTTCAAATAGAATCCT TTAAATCTTTATTTGAATCGTCAATTGATTACTGGTGAAATTATCCGCCTCATACTCCACCATCATTGAGCACAAACACA GGAAGAGAGAGAGCAACGTGAAGAAGGAGATGGCAATAGTTTAATTAGAAAAAAGGCAGAAGAGGACGTGAGGACAAATA TGAGTCTGGATTGTATAAAAAATCAGTTCAATCTCAGGAAGGCCACTGTAAAAAATCAATTCAATCTCAGGAGATGGTCA AATCTGATGTTGTAGTCTCATAGCCAATTTGTACCTTTCAGAATACGCTAATAATGAAGATATTTTTGATCAATTTTACA TTTATTATTATTATATAATAGCTAATACTCTAGGATATTGAGGCATGATATTGGAAAAAAAATTGAATATTGCAAAAACA AATAATTATCAAAAAGGGGTAAAAAAATTGGTATTTACCCAAATGGTGTGAATTTGGCCCGTTGGAAGTTGAGGTGGCAC GAGGGCATGATGCTGGACGCATATTACGAAGTGAATTCGCGCAAGCTTAGGCACATCAAACATGAGAATCTCCTCCTTCC CTAAGTTGTAGCCGCAGCTGTTAGAGATTCCCATGCCAAGGAATCTTTCAAGTGGTGATTGCAAGTTCTTTTGGGCGAAT TCCATGGATTCGCGTGATTGCAGGCCGTTTCATGACAAGAGGACATGATAAGACATGACCTACACGAGGGAACATTTATA ACACTTGAGCCATGCTGAACTTGGAATGACGCGCATGTACCTTGATTCGCGACACATGGGGGCGCATCCTTTTGTCAGTT TCTAGCAGTTCACACCCCTATAAAAGGACTGCTAAAATTACATTCGCACGAACAAAAATTTCTCTTCTCCAAACCTTCTT AATTTCACTTCTTCTTCAAACTTTTTTCCTACACTAAGGGGTTGTTTGGTTTGGAGGAAAGAAAGAGAAAGGATTAGAGA AGGAAAGAAAGCACAAAAATCAAGAAATCTTCCCTCCTTTAGTTTAGAAGAAAGAGGGGAAGGAAAGAAGAATCTTAGTG AGGCCCACCCGAAAAAACTTTCCTCCCAATTTGGATGGAAATCTGGTGTTGGCGTCTATGGTACAGTTAAAACTGTCCCA CGGTGATTCAGTTCACTCTTGAATCGTTAGATTTTTTTTTTTTAAAATTTGAATGGCTTAGATCAATTACCAATAAAAAA TCCATTGGTTAAATATATGTGCCTTTCTAAAAGACCCTTTTCCCTTCCCACATTCCCCCCACCACCGTGCCTGATCACAG AGCCCACGACGGAGACCAGCATGCCAACCACGGAGGTTGATGTGGCCACAACAAGCCTCGTCGACATCCTTACTGTGACG ATGTGGAGGGCAAGTTTGAGGCCTTGGGCCACGAGAGAGAAGAGGAAGATGTTAAGAAGCATCACCGCTCTGTCAAGCAA AGTTTCAGAGTACCCATTTAGCCCCAAATCAGGAGAAGCAAATATCACAGCAGAAGAACCCCCATATCAGTGCGATTCCA CTCAGTAACGTTCTTGGAATCGTTGATTTCGTTGCGTTTTGGTTTGAACGGCAAGTGGGTGAGTGAATGAAACAGTGTTA GAACACCGTGAATCAAGAAATGCTCTCCGAGGAAAATATCAGGGTTTGATACCTTGGCATGGTTGATTGCAGAAGAGGAA AAAGAGGAACTTGAGGCAGTAATTTTGATGATTAGGATGCATGCATGAGGATAATCCCAGATCTTGTGAGAGTTTCCTGA TCCAGATCTCAAATAGAAGGAATTGGGTTGATTGTGTTCTTCATATGCACTGAATTCATTAAATCTCCTTTCACAATTTG ATTTTCCCAAACTGAATTCATGAGATCTTGTATTTTTCCCTTATCAAGTTGGTTGCTTCAGATGAAAATATATGTTGATT GTATTGATCGGTGATGGGTGCTGGTTCTGTGACTTGATCTTGTGCTTGGAGATGGTGTGGCGTGGTGGCCGGGAATGACA TTTTTGCTGCTGTATTGGGGGTCGGTAAAAGTTTTATCAACTTTTGTAGCGGGCGCCGGTAAAGACCAGAAGAACAACCG GAAAATATTATCAGTTTTCAGCGGCAATAATTCCCGGCCTTAGTCATTGCCACTATAGCCTAATTTTGTTTTGTGTGATT TGGCGTGTTCACTAGCTATTGTTATTGCCACTAAAAGTATTGATTGAACATTAGCTGTCATTCAACCCACTTCACAGTTT TCCAAGGTTAACTGTAGTTGTAGTTTGTTTTCTTCTAGATAGACAATATTTGTCAACAACAACTTTATATCTCATTTCAT TGACCTGGAAAATAAATTAATTGAAATATTTTACAACTTAACCATCATAGTTCCATTGAAAAAACATATTTCACTAAATT CATACTGAAATATCAAGTACTTCTAACTGATAAAAGTTGATGAGTCTCTAAAAGCATAAAGCATACTAATATCCAAATCT AATATATACTATCATTTTAGGTACGACAAGTGATCTAAGCACATAG
CDS sequence (LotjaGi1g1v0276000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCCAACAAAAACATCATACTAACGGGCTAGACCAAATGTTTCTTCATCAGTTCCCATCTTCTTGTTCTTCTATGCA ACTCCCAACCTCAATGGAGCGGTCAAGTTCATCAAGGTGGAAGCCCCACATCGAGGTTGCTCCCAATTGCCCTCGCTGCG CTTCCACCAACACCAAATTCTGTTACTACAACAACTACAGCTTGTCCCAGCCGCGGTACTTCTGCAAAGGCTGCCGCCGC TACTGGACCAAAGGCGGCTCTCTCCGCAACGTCCCTGTAGGGGGCGGATGCAGAAAGAGCCGCCGCGTGAGGTCCTCCGC GTCAAGGCACCTTCAAAGCGAACGCCTTTCTTCATCAATTGGTGGTAGTGGTGATGGTGATCAACACGGAGGCCAAACCA ATGGGTCACGTGACATTGACATGGCGCTCGTGTTCGCGAAATTCTTGAACCAAGACACGAGCTCTGGTGAGGAATTTGAT AGAGAGGGTAACAACCGGTCGTCGTCTTTGACACCGGAAAGTGTGGAGCTGCCTCAGAAGCAGCTCTCTGATGCTGAAGC TGATTCTGATGCTGATGCGATGATGGTAGTGGGTGGTGGGGACCACCTTCTTGTTGGTGATGAGTTGAGTTTGAGTGGGA TTGATGAGTTGGAGGGTTTTCTTGGTGGTGACGATAATGATGTGGTCCATGATGCTTTGTTTTCTGATACTACCTTGTCT GCTTCCTCCATTACCTGGCAGACACCGATGATCGAAAAGCAGTCGTTGGAGTTGGAGTTGGAGTACTCTATGCCATTCAA TGAGGATTGTATTGGAAGTCATGATCAATTGTTACCGGTTAGTTCAGCTTCTAGTACAATGAATTTAATTAGCGACAGTT GGGCTACTTGGAATTCCTTTGATCTTTCAACCATGGAAGTTTTCTCATCAAGACCTTGA
Protein sequence (LotjaGi1g1v0276000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFQQKHHTNGLDQMFLHQFPSSCSSMQLPTSMERSSSSRWKPHIEVAPNCPRCASTNTKFCYYNNYSLSQPRYFCKGCRR YWTKGGSLRNVPVGGGCRKSRRVRSSASRHLQSERLSSSIGGSGDGDQHGGQTNGSRDIDMALVFAKFLNQDTSSGEEFD REGNNRSSSLTPESVELPQKQLSDAEADSDADAMMVVGGGDHLLVGDELSLSGIDELEGFLGGDDNDVVHDALFSDTTLS ASSITWQTPMIEKQSLELELEYSMPFNEDCIGSHDQLLPVSSASSTMNLISDSWATWNSFDLSTMEVFSSRP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 25 | 301 | 277 | 3.9E-68 | – | |
PANTHER | 25 | 301 | 277 | 3.9E-68 | – | |
Pfam | 48 | 102 | 55 | 5.2E-32 | ||
ProSiteProfiles | 48 | 102 | 55 | 28.621 | ||
ProSitePatterns | 50 | 86 | 37 | - | ||
MobiDBLite | 93 | 136 | 44 | - | – | |
MobiDBLite | 110 | 135 | 26 | - | – | |
MobiDBLite | 154 | 189 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0276000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…