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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0277900 |
| Transcript ID | LotjaGi1g1v0277900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dirigent protein; TAIR: AT3G13650.1 Disease resistance-responsive (dirigent-like protein) family protein; Swiss-Prot: sp|Q9LID5|DIR7_ARATH Dirigent protein 7; TrEMBL-Plants: tr|I1N9C3|I1N9C3_SOYBN Dirigent protein; Found in the gene: LotjaGi1g1v0277900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:68067649..68068676) extracted from Lotus japonicus Gifu genome v1.2.
AACTAATTGAAAGCCAGCCACAGACATCCAAGAAGCAGGAATTGATCTCTCTTTTCTCTCACACGCTAGCTAGGTGTAAT ACATCAGGCAATTACTTTTCTTACTTCATTGACACCTACCATGGCCAAATCCAAAGCTTTGATGCCCACTTTCTTTATCT CATTGAACCTTATTTTCCTCTTCTCCTCCGTAGTCACAGCCTCTTACTCTAAAACCATATCACCAACACTATTGGGCTTC CGTGAAGAGAAGCTCACCCACCTCCACTTTTACTTCCATGATATTGTCGCGGGCCCAAACCCGAGCATGGTCATCGTGGC CGAGCCAAACGGGAAGGCCCCAAATTCCCTCCCGTTCGGAACGGTGGTGGCCATGGACGACCCCTTGACTGAGGGGCCCG AGCGTGACTCCAAGCTCGTGGGAACCGCACAGGGGATTTACACCTCGATATCTCAGAACACTCCGGATGACATGGGGCTT ATGATGGTGATGACATTAGCTTTCTCTGAGGGAGAGTTTAACGGAAGCACGCTATGTATGATGGGGAGGAACATGATCAT GCGGTACCCTGTGAGGGAAATGGCCATTGTTGGTGGCACTGGAGCTTTTCGACTTGCTCGTGGGCATACTGAGGGCAAGT TTCATTCAGTTGATTTCACCACAGGAGATGCAACTGTGGAATACGATGTTTATGTCTACCATTACTGATAAGAGTTCACG GTCAAGGTTCATTCACCAATGTGCCAAGTTGTGTTATTCTTTATATCCTTTATTTTGGGTAGAGCTAGTGTACCATTTTG TAATAAATAGTGAGAAACTGTAATGCATGTACGTTTATGATTCATTGATAGGGTCCTCTACTCCTCTTGAACCCAATAAT GCTAGGAACACCAAAGCTGTATGTTTATATGAGGTGTATTTTTAGTTATGAATTATATATTATATATGTATCCAGTTTAA TTGTCGTTGACAAATTATATTCATAGCAATTTACTATTGTTTCATCCTTGCCGTTTCATTCCTTTTCC
CDS sequence (LotjaGi1g1v0277900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAAATCCAAAGCTTTGATGCCCACTTTCTTTATCTCATTGAACCTTATTTTCCTCTTCTCCTCCGTAGTCACAGC CTCTTACTCTAAAACCATATCACCAACACTATTGGGCTTCCGTGAAGAGAAGCTCACCCACCTCCACTTTTACTTCCATG ATATTGTCGCGGGCCCAAACCCGAGCATGGTCATCGTGGCCGAGCCAAACGGGAAGGCCCCAAATTCCCTCCCGTTCGGA ACGGTGGTGGCCATGGACGACCCCTTGACTGAGGGGCCCGAGCGTGACTCCAAGCTCGTGGGAACCGCACAGGGGATTTA CACCTCGATATCTCAGAACACTCCGGATGACATGGGGCTTATGATGGTGATGACATTAGCTTTCTCTGAGGGAGAGTTTA ACGGAAGCACGCTATGTATGATGGGGAGGAACATGATCATGCGGTACCCTGTGAGGGAAATGGCCATTGTTGGTGGCACT GGAGCTTTTCGACTTGCTCGTGGGCATACTGAGGGCAAGTTTCATTCAGTTGATTTCACCACAGGAGATGCAACTGTGGA ATACGATGTTTATGTCTACCATTACTGA
Protein sequence (LotjaGi1g1v0277900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKSKALMPTFFISLNLIFLFSSVVTASYSKTISPTLLGFREEKLTHLHFYFHDIVAGPNPSMVIVAEPNGKAPNSLPFG TVVAMDDPLTEGPERDSKLVGTAQGIYTSISQNTPDDMGLMMVMTLAFSEGEFNGSTLCMMGRNMIMRYPVREMAIVGGT GAFRLARGHTEGKFHSVDFTTGDATVEYDVYVYHY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 9 | 9 | - | – | |
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| PANTHER | 1 | 194 | 194 | 2.0E-91 | – | |
| PANTHER | 1 | 194 | 194 | 2.0E-91 | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 10 | 21 | 12 | - | – | |
| Phobius | 22 | 27 | 6 | - | – | |
| Phobius | 28 | 195 | 168 | - | – | |
| Pfam | 46 | 192 | 147 | 2.9E-52 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0277900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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