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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0278000 |
| Transcript ID | LotjaGi1g1v0278000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dirigent protein; TAIR: AT1G65870.1 Disease resistance-responsive (dirigent-like protein) family protein; Swiss-Prot: sp|Q9SS03|DIR21_ARATH Dirigent protein 21; TrEMBL-Plants: tr|A0A151TUF9|A0A151TUF9_CAJCA Dirigent protein; Found in the gene: LotjaGi1g1v0278000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:68076893..68078104) extracted from Lotus japonicus Gifu genome v1.2.
TCAAGACTCTATAAATGTCTCTTCCACTCGTCACGTTCCAAGAACTTGTCTCTATTCTCACAGCTTTTCATCAGTTCTCC CAATTTCTCACCCTCGCCATTTCCACCGGCCACCACCACCATCTTCCATGGCCAAATCCAAAACCCTGATCTTGTCCCTT TTCATCATTTCCCTAACCCTCCTTCTCTCCTCAGCCATCGCAGCCAAACAACCTCGTTTCTCCCGAATGATCACCCCAAC CTCTCTAGGCCTCAAAAAGGAAAAGCTCAGCCACCTCCACTTCTACTTCCACGACATTCTCAGCGGCCCGAAGCCCACCG CGGTGACGGTCGCCACGGCCCAGATGACCAACACCTCCTCCACGTTCTTTGGGATGGTCAACATGGCCGACGACCCGCTG ACGGTGGGCCCTGAGCCGGAGTCCAAGCTCTTAGGAAAGGCGCAGGGGATCTACGGGGCCGCTGCGCAGCAAGAGGTTGG GCTACTGATGGTCATGAACTTCGCATTCTCGGAAGGGAAGTACAACGGCAGCACGCTCAGCATGTTGGGGCGGAACACGC CGCTCTCCGCCGTGAGGGAGATGCCGATTGTCGGAGGGAGCGGACTTTTCCGGTTTGCGCGTGGGTATGCTCTGGCTAAT ACTCACACTTTTGATCTCAAGACAGGGAATGCTGTTGTGGAGTATAATGTTTACGTGTTCCATTATTAACCGTTGGCTTC TTCGGAGTTGAAACACCACCGTCCTTCTTTGTTCTAACGTCTCTCATTCATGTTTTAGTTTTGTCCTTTTCTCCTGTTTG GGACATGGTTAGATGCTCTTGGAATGAAAAGTTGTTCGTTGCTTTTGAGTATGTATGATTTAACTTCAATCTCATTCATT GAATATTGGTCATGTGTTAATTTAATTATGCCTTAATTATATAACAATTAAAGTTTTAAAGCATATTAAATATAATACGT AAATTAATGTTTCAACTGTCTGCCTCTAAAATAAGTAATTGAAAGTTTAAATTCAAGTGATGCATGTTTAGTCAAAGTTA TCAACTGTAAGATATTGAAAAAAAAACTTTCAATAATGTTGTCAGTGTTTTGTTTGTTACCTAGAGTAATAGTAGTACAT GCATATATTAACTGTAAATTGCAAGATATATCATTACTATAGTTGTTATTCACTTGTCCTGGTGCCTTTTTTCTTTGTGA GTTGTGACCTCA
CDS sequence (LotjaGi1g1v0278000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAAATCCAAAACCCTGATCTTGTCCCTTTTCATCATTTCCCTAACCCTCCTTCTCTCCTCAGCCATCGCAGCCAA ACAACCTCGTTTCTCCCGAATGATCACCCCAACCTCTCTAGGCCTCAAAAAGGAAAAGCTCAGCCACCTCCACTTCTACT TCCACGACATTCTCAGCGGCCCGAAGCCCACCGCGGTGACGGTCGCCACGGCCCAGATGACCAACACCTCCTCCACGTTC TTTGGGATGGTCAACATGGCCGACGACCCGCTGACGGTGGGCCCTGAGCCGGAGTCCAAGCTCTTAGGAAAGGCGCAGGG GATCTACGGGGCCGCTGCGCAGCAAGAGGTTGGGCTACTGATGGTCATGAACTTCGCATTCTCGGAAGGGAAGTACAACG GCAGCACGCTCAGCATGTTGGGGCGGAACACGCCGCTCTCCGCCGTGAGGGAGATGCCGATTGTCGGAGGGAGCGGACTT TTCCGGTTTGCGCGTGGGTATGCTCTGGCTAATACTCACACTTTTGATCTCAAGACAGGGAATGCTGTTGTGGAGTATAA TGTTTACGTGTTCCATTATTAA
Protein sequence (LotjaGi1g1v0278000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKSKTLILSLFIISLTLLLSSAIAAKQPRFSRMITPTSLGLKKEKLSHLHFYFHDILSGPKPTAVTVATAQMTNTSSTF FGMVNMADDPLTVGPEPESKLLGKAQGIYGAAAQQEVGLLMVMNFAFSEGKYNGSTLSMLGRNTPLSAVREMPIVGGSGL FRFARGYALANTHTFDLKTGNAVVEYNVYVFHY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 7 | 20 | 14 | - | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| PANTHER | 10 | 192 | 183 | 3.1E-88 | – | |
| PANTHER | 10 | 192 | 183 | 3.1E-88 | – | |
| Phobius | 21 | 25 | 5 | - | – | |
| Phobius | 26 | 193 | 168 | - | – | |
| Pfam | 48 | 191 | 144 | 1.4E-55 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0278000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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