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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0278900 |
| Transcript ID | LotjaGi1g1v0278900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Gamma-tubulin complex component; TAIR: AT5G06680.1 spindle pole body component 98; Swiss-Prot: sp|Q9FG37|GACP3_ARATH Gamma-tubulin complex component 3; TrEMBL-Plants: tr|V7CYH3|V7CYH3_PHAVU Gamma-tubulin complex component; Found in the gene: LotjaGi1g1v0278900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:68176844..68182763) extracted from Lotus japonicus Gifu genome v1.2.
CTTTCCGCGCCCAATCAAATTAAAAAAAACACACTCCTCTCTCACTCTCTTTCATCATCACAATCCCATCGTCAACCAAA AAAGGAAAAGAAAAAAAAAAAAAAGCAGTTAACTCGAAAAGCCTGCACAGTGCAGAAACCACGATCGATTACCATGGACG AAGAAGAAGAGCAGCAGAAGCTTCCAGATCTGGTCAAGGAACTCGTCCACCGTCTCCTCCGCCACAATCTCCCCGCCGAC TCACCACCACTAAACCCTAACTCCCCGGAATTTCAAAAACCCCTCCGCTACGCCCTCCGCATCCTCTCCAGCCGCCTCAA CCCCTCTCTCTCCGCCCCCGACGCCGCCGCCGTCGCCGAACAAATCAAACGCCGTCTCGCCACTCACGGCCGCTCCGCCG ACGCACTCTCGTTCGCCGACTTATACTCCAAGTTCGCCGCCAGAGCCACCACTGTTAACAACAAATGGGCCCTGCTCTAC CTCCTCGAGATCCTCGCAGAAGATCGCAAGGCACTGGCTCAGACCCAGTTCCATCCCTCCCTCATTCTTCCCTCCCTCCC AATCCCTCCCAACCACCACCACGAGGGACCCAACGACGGCGTTTTGCTCCTCGCTAAGGATCCAGAGAATCGCCGCGACA TCGCGTTTCGCGAGTTTGTGAATTTGGTCAGGGAGGAAAATGAGGTCTCCGAGGAGGCTCTGGTGAAAGACGTGCTCTAT GCCTGCCAAGGGGTTGAAGGTAAATACGTGAAATTCGATGTTGTCAACAATTGTTACGCTTTATTGGATTCGATTAGGGT CACTAGGGCCACTAGGAGCATGGTTCATAAGCTTAGTGAACTAGGAGGGTTGTTTAAGAAGGTTACTGGGTATATATGGC AGAGTATGGATCGGTTTCCGGCCGAAGATGTTGGAACAGTTGGGCAGGCTTTTTGTTCTGCTTTGCAGGATGAGCTGAGT GAGTACTATAAGCTTTTGGCGGTGCTTGAGGCTCAGTCTTCGAACCCGATTCCTTTGGTTTCTGAATCGGCGAGCTCCGG GAACTATCTTTCTCTGAGGAGATTGGCGGTTTGGCTTGCGGAGCCAATGGTGAAGATGAGGCTTATGAGTGATTTGGTTG ATAAATGTAAGATTTTGCGCGGTGGGGCGATGGCTGGTGCGATTCACCTGCACGCGCAGCATGGTGATCCGTTGGTTCAT GAGTTCATGAAGAGGCTGCTGCAGCGTGTTTGTTCTCCGTTGTTTGAGATGGTGAGGAGATGGGTTTTGGAAGGGGAGTT GGAAGATATCTTTGCTGAGTTTTTCATTGTTGGGCAGCCTGTGAAGGCTGAGTCCCTTTGGAGAGAAGGGTATAGGCTCC ATGAGGTGATGCTTCCCTCGTTCATTCCGTCTTCGCTTGCTCAGAGGATCTTGAGGACTGGGAAGTCCATTAATTTCCTT CGTGTTTGCTGTGAGGATCGCGGCTGGGCTGATGCTGCAAATGAAGTTGCCACTGATACAGGGGCCACCGCGAGAAGGGG TGGTTTTGGTTATGGTGAGACTGATACCCTTGAGTCGTTGGTGGATGAAGCTGCTAAAAGAATTGACAAGCATCTGTTAG ATGTGATTTACACGAGATACAAATTCAAAGATCACTGCCTTGCAATTAAGCGGTATTTGTTGCTCGGCCAGGGTGATTTT GTGCAATATCTGATGGATATTGTTGGGCCTGAGCTTTCCGAGCCAGCTAACACTATAAGCTCTTTCAAACTTGCGGGATT GCTGGAAACTGCAATTCGGGCATCTAATGCTCAGTATGATGATCCTGACATTTTGGATAGGCTAAGGGTCAAAATGATGC CACATGAAAGTGGAGACAGGGGCTGGGATGTGTTTTCACTTGAATATGATGCAAGTGTTCCACTAGATACTGTGTTCACA GAGTCTGTAATGGCAAAGTATCTAAGAATTTTTAATTTTCTGTGGAAGCTTAAAAGAGTGGAACATGCACTTATTGGTGC CTGGAAAACCATGAAACCAAACGGTATTACTTCTAGTTCCTATACCAGATTGCAACATGCAGTAAAGATGCAGTTAGTTT CAACATTGAGGCGCTGCCAGGTTCTTTGGGTTGAAATTAATCACTTTATTTCAAACTTGCAATACTATATTATGTTTGAA GTCTTGGAGGTATCATGGTCAGATTTGTTAAGTGAGATGGAAGTAGCCAAGGATCTTGATGATCTACTTGCAGCTCACGA GAAATATCTGCATTCAATTGTAGAGAAATCTCTCCTTGGAGAGCTTTCCCAATCCCTTTACAAGTCACTATTGGTAATAT TTGACCTTATATTACGTTTTCGCAGCCATGCGGATCGGTTGTATGAAGGTATTCATGAATTGCAAGCAAGGTATTGATCT TACTTTTTCTTCTCTACGCATTCCCCTCACTCTCCTATCCCCCCCCCCCCCCCCCCCAAAATAAATACTTTGCTATGTTT GACATTTGATCCCCTACCCCTCCAGCCCCCTAAAATAAATACTTTGCTATGTTTTACATTTTACGATGTGTTTGTTTCAG AATCACAGAATCCTCCCGATCCTCTCGAGACCAGAAAAAATCACGAAAGCAGCTAAATGATGAGTCTGGGGAACAAGGAT CCTGGATTGCTGATGGGAGAAAAGCCCTAACACAACGTGCTGGTGAATTTCTTCGAAATATGGAACAAGATCTGGATGCA ATTGCTACGGATTACTCATCATTGCAAGAGGAATTCATTTCCCAGTTGCCTGTACAGCAGCATGTTGATCTAAAGTTTCT CTTTTTCCGTCTTGACTTCAATGAGTTTTATGGGCGGTTGAGTCCTAGCATGTAGGAGATTTGTGAATAAGACTGAGGGC GAGGTTGAAGCATTGTTTCTTCAAGAAGATAACACATTAACAAAGATTTGCAACTTCCTGACTTCCATTGTGTGTTTGCG TGGAACAAGTCTATTGGTGCTCACTTCCTTCAGACCAAACATTCTATAGGTCATTGTTTGACAGTAAGTATGGGGCCTCT TACTCTCTCTCTCTCTCTCTCCCATCCCCCTGGCAATGTTTTCTATGGAGAAAGTGACCTTCTCTTTCTCTTCAGGTGGT CATTTTTTATGGTCTGCAAGGTAGTTTGTCGCGGATGTAAAGCTATTAATATTCTGATTGGATGCAGATGTGAGTGATAC ACACGTAAGTATCTGATGATTTAGTTAGTGTTTTCGGATTTAGTTAGTGTTTTCGGCAACTTTTGCAAGCTGTGCTTTCA GCGATTGTTTATCTGTATCATAGATTTTGTATTGGTTGAATGAAAATGGGTGTCTGAAGATCTGGTTTCTGCATTCTCTT GTATTCTGGTTTACTATCTTTTCTCACTTGCAGAGTGCTTGAATTTTTGCCTTGTGGCAGTATAAGTAAAGCCACAGGTG AATCAAGTATCAAGATACTTGCCTTACAATCCAATATATTTTATACTTGTCTAAGGTAATGAAGGTGCTTCTTTTTTATT TTCTGTTAGCTCAGTCTCTAGAATTGAAGAGTGAAGCCTTATTTTGTTACTTTAATGGTAGGATAGCAACACATGAATAG TCGAGCTTATTAATTGGGTGATTGCTTTCACTCATTCTCAAGCACAAACAGTAGTCATATTCCAACTTGCAAAACAGCGT GTTGAAAACTTGGTTGCTTTGGTAATTTGATTTTATTTAAGAGTTTTTTATTTTAGGGATTTTATAACATCCGGTTTATT AGTATTTGTGAATGCTTAGTATATTGTAATTATCTCTCTGGCTGAAAATGTTGGAAAGGAACAAGCACATTTTGTTTTTA AGGAATATAGTGAGAAACATACTAGGGGGTTGAATTATTTTCAAAAAGATGCATGTTCAAACTCCAGTTATATCAATGTT GGCATTTGTTACATACGCACTACAGATCATTTTGTAAAGATAGGCAACTGGAACTTAGGTTGATTCAATAAATAATTGGA TTACTGTCATAATTATCAATCTTTTTAGGCTAATGCTATATGTAAACAACATTGTATTGGCAAAATTTGTCATTCATATC TGCTACGATATCTATCTATATATGTTGTCTCTATTTCAGTATTCTGTTTTTTCATAAACATCATCCTTTGTACAATTGAT TATGTGAATATACTAAATAATATGGTCATTGTTCAATGTTCCAGTGATAGGAATGACTGTTGAGTTGGCAATAAATGCTG CTAATATATAGGTAAACACTGAAATGCAGTCCCACAGTATTTTGGATGATATACTTTATAGTATTGAGAAAAGGTAGGTG GAGCTGTATTTTGTAATCAGAGATTCTCTTGTTGTGATACTTGTGTCACTCAGATCCTAATGTAATAGAAAAGCTTTAGT AGCATTCAACTAAAACAACCCTTCATACATCCAAACACATACTCATTGGAAGTTTGAACCTAAGGACACTTCAAATTAGT AGTCATGTCATATCATAAATGTGTTTGTTATGTATTTGTGCTAGGCATTTCATAGACGCTTAAATTTTACTCCCTCTGTT CCTATATTCCTATATATAAGTCACAAATAACTAATTCTCTTAGATTAAGAAAAGTAGTTAGTAGTAATAAATTTGTAAAG AAAATGATTTCCTTTCCTAGATTACCCTTATTTACTTTCATATGATTTTCTCTCTCCAAGTTAATACTTCTAAAGTTTAT CATCTCTTTCATATTAAATATGAGGGTGAACTTGGAAAGAAATTATTTAATGCTTCATAAATATTAGAAAGTGACTTATA TTTTGCAACAATTTTTTTTCAAAAAAAAGTGACTTATAATAGGGAACGGAGAGAGTATAATTTTTTGCTTTTATTTCTTG AACTTTTATACTAATTAAGATAGGAACAGAGAAGTAGTTGGATAAATGATAATTTATTATGCATACAATGACTGATTTTG GAACATTAAGTTCAATTTTTAATTGGCTTAATTGTACTTCTCTTCCCATATTTATCATGATTGTGTGATTTGACTCTTAT CTTATGTTTAAAATGAGTGATTTTTGTCCCTCGAATGCTAATTTGTGCAATTAGGTACGCCTGAATTTGTCATCAATTTT AACTGAACGAATCTTAAAGGGGTAGTCTAATTTCATTTGAAGTTGCATTTCAACATACGCAACACTTTAATCTCCCAGAA ACGCTAGTTATTTTCAAAATCTATATTTATAACTTAATGTCAATAAATAGTAAGCAAATAAATATAATATTGGATGTGAA AAAATAAAGTAAACTATTTCTGGGGAAAAAAATTTATTTTGCATTCTTCTGGAATTTAAAAAGTCACATGCTAACTGCTA AGGGCCTGTTTGGTATAGCGTTGAAAACACCTAACGCGCGTTGCTTTTGCAGTAACGTGGTTCACCTCTGTTCTTTACCT GTTTGGTTTCGCGTTTCTGAAAACGCATCAACGCATTTCGGCTCCAAAACGGCGTTGAACGAGAAGCGAGAAATCGGAGC GGTGGCGTTTGACGTTTGCGTTGGACCGTTGCTGGCAAGCACCAAATCACCAGATCTGTGCGGCTCTGGTTCAGATCTGT TCGCTTGCTCTGTTTCTTTGTTCATTTTCCATCTTATTTTGGTCCGTCAAGTTTTTTTCAACATCATCCGTTGGAGAGGA AGATTGGCTCACCAATTTGCAATATTCAATGCATAAAATTGGTGGGTGTCAAGAACAGAGCTTCTCCGTGGACTATAGTT CCTCTGCTACATGTTGTTGTTAGGTCGTGTTACTATTGTTTTGTGTCTTTATCCTCTGTTTTTCTATGTTTTCGTTTTTC CTCTTTGTATATGGTTAACTTTTGGGTGGCTTATCAAAATAACCAAATTGCAATATTCAAAACTGAGTTTTAGATATTTT
CDS sequence (LotjaGi1g1v0278900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGAAGAAGAAGAGCAGCAGAAGCTTCCAGATCTGGTCAAGGAACTCGTCCACCGTCTCCTCCGCCACAATCTCCC CGCCGACTCACCACCACTAAACCCTAACTCCCCGGAATTTCAAAAACCCCTCCGCTACGCCCTCCGCATCCTCTCCAGCC GCCTCAACCCCTCTCTCTCCGCCCCCGACGCCGCCGCCGTCGCCGAACAAATCAAACGCCGTCTCGCCACTCACGGCCGC TCCGCCGACGCACTCTCGTTCGCCGACTTATACTCCAAGTTCGCCGCCAGAGCCACCACTGTTAACAACAAATGGGCCCT GCTCTACCTCCTCGAGATCCTCGCAGAAGATCGCAAGGCACTGGCTCAGACCCAGTTCCATCCCTCCCTCATTCTTCCCT CCCTCCCAATCCCTCCCAACCACCACCACGAGGGACCCAACGACGGCGTTTTGCTCCTCGCTAAGGATCCAGAGAATCGC CGCGACATCGCGTTTCGCGAGTTTGTGAATTTGGTCAGGGAGGAAAATGAGGTCTCCGAGGAGGCTCTGGTGAAAGACGT GCTCTATGCCTGCCAAGGGGTTGAAGGTAAATACGTGAAATTCGATGTTGTCAACAATTGTTACGCTTTATTGGATTCGA TTAGGGTCACTAGGGCCACTAGGAGCATGGTTCATAAGCTTAGTGAACTAGGAGGGTTGTTTAAGAAGGTTACTGGGTAT ATATGGCAGAGTATGGATCGGTTTCCGGCCGAAGATGTTGGAACAGTTGGGCAGGCTTTTTGTTCTGCTTTGCAGGATGA GCTGAGTGAGTACTATAAGCTTTTGGCGGTGCTTGAGGCTCAGTCTTCGAACCCGATTCCTTTGGTTTCTGAATCGGCGA GCTCCGGGAACTATCTTTCTCTGAGGAGATTGGCGGTTTGGCTTGCGGAGCCAATGGTGAAGATGAGGCTTATGAGTGAT TTGGTTGATAAATGTAAGATTTTGCGCGGTGGGGCGATGGCTGGTGCGATTCACCTGCACGCGCAGCATGGTGATCCGTT GGTTCATGAGTTCATGAAGAGGCTGCTGCAGCGTGTTTGTTCTCCGTTGTTTGAGATGGTGAGGAGATGGGTTTTGGAAG GGGAGTTGGAAGATATCTTTGCTGAGTTTTTCATTGTTGGGCAGCCTGTGAAGGCTGAGTCCCTTTGGAGAGAAGGGTAT AGGCTCCATGAGGTGATGCTTCCCTCGTTCATTCCGTCTTCGCTTGCTCAGAGGATCTTGAGGACTGGGAAGTCCATTAA TTTCCTTCGTGTTTGCTGTGAGGATCGCGGCTGGGCTGATGCTGCAAATGAAGTTGCCACTGATACAGGGGCCACCGCGA GAAGGGGTGGTTTTGGTTATGGTGAGACTGATACCCTTGAGTCGTTGGTGGATGAAGCTGCTAAAAGAATTGACAAGCAT CTGTTAGATGTGATTTACACGAGATACAAATTCAAAGATCACTGCCTTGCAATTAAGCGGTATTTGTTGCTCGGCCAGGG TGATTTTGTGCAATATCTGATGGATATTGTTGGGCCTGAGCTTTCCGAGCCAGCTAACACTATAAGCTCTTTCAAACTTG CGGGATTGCTGGAAACTGCAATTCGGGCATCTAATGCTCAGTATGATGATCCTGACATTTTGGATAGGCTAAGGGTCAAA ATGATGCCACATGAAAGTGGAGACAGGGGCTGGGATGTGTTTTCACTTGAATATGATGCAAGTGTTCCACTAGATACTGT GTTCACAGAGTCTGTAATGGCAAAGTATCTAAGAATTTTTAATTTTCTGTGGAAGCTTAAAAGAGTGGAACATGCACTTA TTGGTGCCTGGAAAACCATGAAACCAAACGGTATTACTTCTAGTTCCTATACCAGATTGCAACATGCAGTAAAGATGCAG TTAGTTTCAACATTGAGGCGCTGCCAGGTTCTTTGGGTTGAAATTAATCACTTTATTTCAAACTTGCAATACTATATTAT GTTTGAAGTCTTGGAGGTATCATGGTCAGATTTGTTAAGTGAGATGGAAGTAGCCAAGGATCTTGATGATCTACTTGCAG CTCACGAGAAATATCTGCATTCAATTGTAGAGAAATCTCTCCTTGGAGAGCTTTCCCAATCCCTTTACAAGTCACTATTG GTAATATTTGACCTTATATTACGTTTTCGCAGCCATGCGGATCGGTTGTATGAAGGTATTCATGAATTGCAAGCAAGAAT CACAGAATCCTCCCGATCCTCTCGAGACCAGAAAAAATCACGAAAGCAGCTAAATGATGAGTCTGGGGAACAAGGATCCT GGATTGCTGATGGGAGAAAAGCCCTAACACAACGTGCTGGTGAATTTCTTCGAAATATGGAACAAGATCTGGATGCAATT GCTACGGATTACTCATCATTGCAAGAGGAATTCATTTCCCAGTTGCCTGTACAGCAGCATGTTGATCTAAAGTTTCTCTT TTTCCGTCTTGACTTCAATGAGTTTTATGGGCGGTTGAGTCCTAGCATGTAG
Protein sequence (LotjaGi1g1v0278900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDEEEEQQKLPDLVKELVHRLLRHNLPADSPPLNPNSPEFQKPLRYALRILSSRLNPSLSAPDAAAVAEQIKRRLATHGR SADALSFADLYSKFAARATTVNNKWALLYLLEILAEDRKALAQTQFHPSLILPSLPIPPNHHHEGPNDGVLLLAKDPENR RDIAFREFVNLVREENEVSEEALVKDVLYACQGVEGKYVKFDVVNNCYALLDSIRVTRATRSMVHKLSELGGLFKKVTGY IWQSMDRFPAEDVGTVGQAFCSALQDELSEYYKLLAVLEAQSSNPIPLVSESASSGNYLSLRRLAVWLAEPMVKMRLMSD LVDKCKILRGGAMAGAIHLHAQHGDPLVHEFMKRLLQRVCSPLFEMVRRWVLEGELEDIFAEFFIVGQPVKAESLWREGY RLHEVMLPSFIPSSLAQRILRTGKSINFLRVCCEDRGWADAANEVATDTGATARRGGFGYGETDTLESLVDEAAKRIDKH LLDVIYTRYKFKDHCLAIKRYLLLGQGDFVQYLMDIVGPELSEPANTISSFKLAGLLETAIRASNAQYDDPDILDRLRVK MMPHESGDRGWDVFSLEYDASVPLDTVFTESVMAKYLRIFNFLWKLKRVEHALIGAWKTMKPNGITSSSYTRLQHAVKMQ LVSTLRRCQVLWVEINHFISNLQYYIMFEVLEVSWSDLLSEMEVAKDLDDLLAAHEKYLHSIVEKSLLGELSQSLYKSLL VIFDLILRFRSHADRLYEGIHELQARITESSRSSRDQKKSRKQLNDESGEQGSWIADGRKALTQRAGEFLRNMEQDLDAI ATDYSSLQEEFISQLPVQQHVDLKFLFFRLDFNEFYGRLSPSM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 64 | 836 | 773 | 7.1E-254 | – | |
| PANTHER | 64 | 836 | 773 | 7.1E-254 | ||
| Pfam | 184 | 486 | 303 | 2.7E-75 | ||
| Coils | 261 | 281 | 21 | - | – | |
| Gene3D | 492 | 771 | 280 | 8.1E-62 | ||
| Pfam | 493 | 836 | 344 | 1.4E-77 | ||
| MobiDBLite | 751 | 771 | 21 | - | – | |
| MobiDBLite | 751 | 766 | 16 | - | – | |
| Coils | 790 | 810 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Microtubule cytoskeleton organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins. | ||
| Cellular component | Spindle pole | Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules. | ||
| Cellular component | Microtubule organizing center | An intracellular structure that can catalyze gamma-tubulin-dependent microtubule nucleation and that can anchor microtubules by interacting with their minus ends, plus ends or sides. | ||
| Biological process | Microtubule nucleation | The process in which tubulin alpha-beta heterodimers begin aggregation to form an oligomeric tubulin structure (a microtubule seed). Microtubule nucleation is the initiating step in the formation of a microtubule in the absence of any existing microtubules ('de novo' microtubule formation). | ||
| Molecular function | Gamma-tubulin binding | Interacting selectively and non-covalently with the microtubule constituent protein gamma-tubulin. |
Expression pattern of LotjaGi1g1v0278900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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