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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0281200 |
| Transcript ID | LotjaGi1g1v0281200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Bidirectional sugar transporter SWEET; TAIR: AT5G53190.1 Nodulin MtN3 family protein; Swiss-Prot: sp|Q6NQN5|SWET3_ARATH Bidirectional sugar transporter SWEET3; TrEMBL-Plants: tr|V7AW98|V7AW98_PHAVU Bidirectional sugar transporter SWEET; Found in the gene: LotjaGi1g1v0281200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:68555761..68558225) extracted from Lotus japonicus Gifu genome v1.2.
ACCGACCTCACGCATAACGAGCAGCATGATTTAGTTTTTTCTTTTCATTTTCCCTATTTTCCACTTTTAATACTATTTTA AGCTTCACCACTATACGCGTTCAGCATTGCTTACAATCAGCTATAAATAGAGCATCCCCCAACAGTCTTCTTGGTCGTAA AAAATCTTCATCTCTTCTAAGCTAAGCATAAAGCAAAGAACTAAAAAATGGCAGAGACCCTTCGCATGGCTGTTGCTGTT CTTGGTACTATTTTGTTCATTCATTCCTTAGTTTAACTGCTTAAACTACTTAACAAATTTTTGGAAATCCTTCTTCTACG GTTCGGTTGATTCTAAACTCAAAATCAATTCTCGGAGCAAACTAGCTTCTCTGAGTAGCTTCTGATCTCCTTAACTGATT CTGAGTAAAAATAAGCTGACCCAAGATGCTATGATTATACTTTGAGTCTTGAACAAAAAGTGACTGATTTGCATTTTTCT TGCAGGCAATGCTGCCTCAGTGTCACTTTATGCTGCACCAATGTATGTTACAAACCTTATTCTCTTCTAGTATTTCCATT TCCGTTTCATCTTCCATTATCAAGTGTTGAATGGTTTCCATGCTTTTCATGTGTACAGGGTCACGTTTAAAAGGGTGATA AGGAAGAAAAGCACAGAGGAGTTTTCATGCATCCCTTACATCATTGGACTGTTGAACTGTCTCCTCTTCACTTGGTATGG ATTGCCTTTTGTTAGCAACAAGTGGGAAAATTTCCCTCTCGTCACGGTTAATGGCGTCGGTATCGCTCTTGAGTTGTCTT ATGTTCTCATATACTTCTGGTTCGCTTCCTCCAAAGGAAAGGTGAGTAATTAACAATTACTTCCTAAACATCTTTGAAGT TACTCTTTTATTTCTTTGATCGCGCCCTTGCACAATTTACATAAATGGGAAGTGACAAGTTTTTCTGATATACAAATTTT TTTGTGCAGGTGAAGGTAGCCATGATCACGATTCCAGTTCTGCTTGTGTTCTGCATAACTGCTGTGGTATCAGTTTTTGC CTTCCATGATAGTACTCACAAAAAGCTACTTGTGGGTAGCTTAGGCTTAGGTGTTTCCGTTGCAATGTACGGATCTCCTC TGGTAGCAATGGTGAGTCATGGTTGTTTCCTCTGAAAAATTGTCATACTAGCACATGTGTTCTTGGTAAAATGCAAACTA AAAGAAAGGAAAGTTAAACCAGAACAGAGGAACAGAGCAGTTCTTAATTAGGTAGCATGTTTTGAAATTGCCAAAATCAA TTATGTGGAGAAGCTCTTCTGAGAAACTTCTCGATTTCATGTCAGAATTGATTCTGAGAAAAAACTTGTTGATCTGAAAA TGCTAATTACCTCAGTAACTAGAATGGTGATGGAACATTAAAAAAAAGTTTGCTTTAGTGATTTTTATTTTTGGGGGTTT GTAAATCATGAATTGAATGTAACATAGTTTTATTTTCTTATTAGTGCAGAAGAAGGTTGTACAAACAAAGAGTGTGGAGT TCATGCCACTACCATTATCCATATGCACATGTTTTGCTAGTACACTCTGGTTAACTTATGGGATCCTCATTCGTGATATT TTTGTTGCGGTTTGTACCATAATCCCTAATTAATCATAATCTCATAAATCATAGAGAAATAAAAGTTAAGTATTTTAAAT ACTAATGTTATGTTTTTCCAACTATGATTCAGGGGCCAAGTGTGGTTGGAGTTCCATTAGCCATACTTCAGATAGTCCTT CACTGCAAATACCGTAAGAGGAGTGTTGCTGAAGAACCAAACAAAAGGGACATGGAAAAGGGTAACTTGGAGAAGGTGGA CATTGAAATTGGGGAAGTGGAAAAGGATGTCACAAATCATCATGATAAGGCCAACTCGTGAACAAAAGTTATGGGGAGTG ATGTGGAAAAGGTTGAAGAGATTTCAGAATGTTCTATTCAGATTCCTTCTTTTGTGTTTGTTTCTCTGTATTACCAAATT TTATCTACTTAGCTACATCTAGATGTATTAACCCCATAAAATTCACTCGTAGTTCTTAATAAATTCCTTCTTTTATTGAC CATAATGCATGGTTTGGTTTACTCATTCATTATTATTGTTTGTGATGTGAAGCTCAATACCCCTTGAAGAAAAATGAATC ATGTCAACATCAAATATACAATTTTAAGGGATGTGGATCCTCTGCAGTTCTTCTGTTGCTGCAGCATGTATCATTGACTT AAATTCATTCATAAACTACTTTATAACCATTGGAAGCATAGATGAGTGACTGAGATGGTCAAGAAGAAAGGTTGCAAGTC AAAGTGATGTAGGAATCCATTTTCAATTTTAAGGCGACACTTTTAATTTTGTAAATTGTAATGCTGGTCTGTTGATCATA TCATGAACTCATGTCACTAATGCTTTGTTTCGCTTATCTAAAAAAACTAATGCTTTGTTTCCCAT
CDS sequence (LotjaGi1g1v0281200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGAGACCCTTCGCATGGCTGTTGCTGTTCTTGGCAATGCTGCCTCAGTGTCACTTTATGCTGCACCAATGGTCAC GTTTAAAAGGGTGATAAGGAAGAAAAGCACAGAGGAGTTTTCATGCATCCCTTACATCATTGGACTGTTGAACTGTCTCC TCTTCACTTGGTATGGATTGCCTTTTGTTAGCAACAAGTGGGAAAATTTCCCTCTCGTCACGGTTAATGGCGTCGGTATC GCTCTTGAGTTGTCTTATGTTCTCATATACTTCTGGTTCGCTTCCTCCAAAGGAAAGGTGAAGGTAGCCATGATCACGAT TCCAGTTCTGCTTGTGTTCTGCATAACTGCTGTGGTATCAGTTTTTGCCTTCCATGATAGTACTCACAAAAAGCTACTTG TGGGTAGCTTAGGCTTAGGTGTTTCCGTTGCAATGTACGGATCTCCTCTGGTAGCAATGAAGAAGGTTGTACAAACAAAG AGTGTGGAGTTCATGCCACTACCATTATCCATATGCACATGTTTTGCTAGTACACTCTGGTTAACTTATGGGATCCTCAT TCGTGATATTTTTGTTGCGGGGCCAAGTGTGGTTGGAGTTCCATTAGCCATACTTCAGATAGTCCTTCACTGCAAATACC GTAAGAGGAGTGTTGCTGAAGAACCAAACAAAAGGGACATGGAAAAGGGTAACTTGGAGAAGGTGGACATTGAAATTGGG GAAGTGGAAAAGGATGTCACAAATCATCATGATAAGGCCAACTCGTGA
Protein sequence (LotjaGi1g1v0281200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAETLRMAVAVLGNAASVSLYAAPMVTFKRVIRKKSTEEFSCIPYIIGLLNCLLFTWYGLPFVSNKWENFPLVTVNGVGI ALELSYVLIYFWFASSKGKVKVAMITIPVLLVFCITAVVSVFAFHDSTHKKLLVGSLGLGVSVAMYGSPLVAMKKVVQTK SVEFMPLPLSICTCFASTLWLTYGILIRDIFVAGPSVVGVPLAILQIVLHCKYRKRSVAEEPNKRDMEKGNLEKVDIEIG EVEKDVTNHHDKANS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 247 | 247 | 1.0E-137 | – | |
| PANTHER | 1 | 247 | 247 | 1.0E-137 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 6 | 28 | 23 | - | – | |
| Pfam | 9 | 97 | 89 | 1.7E-17 | ||
| Gene3D | 10 | 107 | 98 | 6.5E-12 | – | |
| Phobius | 29 | 39 | 11 | - | – | |
| Phobius | 40 | 60 | 21 | - | – | |
| TMHMM | 40 | 62 | 23 | - | – | |
| Phobius | 61 | 71 | 11 | - | – | |
| TMHMM | 72 | 94 | 23 | - | – | |
| Phobius | 72 | 93 | 22 | - | – | |
| Phobius | 94 | 104 | 11 | - | – | |
| TMHMM | 101 | 123 | 23 | - | – | |
| Phobius | 105 | 125 | 21 | - | – | |
| Phobius | 126 | 130 | 5 | - | – | |
| Phobius | 131 | 152 | 22 | - | – | |
| Pfam | 133 | 216 | 84 | 2.1E-22 | ||
| TMHMM | 133 | 152 | 20 | - | – | |
| Gene3D | 135 | 221 | 87 | 6.2E-14 | – | |
| Phobius | 153 | 163 | 11 | - | – | |
| Phobius | 164 | 184 | 21 | - | – | |
| TMHMM | 164 | 186 | 23 | - | – | |
| Phobius | 185 | 189 | 5 | - | – | |
| TMHMM | 190 | 209 | 20 | - | – | |
| Phobius | 190 | 209 | 20 | - | – | |
| Phobius | 210 | 255 | 46 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0281200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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