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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0281500 |
| Transcript ID | LotjaGi1g1v0281500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA polymerase sigma factor; TAIR: AT5G24120.1 sigma factor E; Swiss-Prot: sp|Q9ZNX9|SIGE_ARATH RNA polymerase sigma factor sigE, chloroplastic/mitochondrial; TrEMBL-Plants: tr|I1KAN0|I1KAN0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0281500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:68623598..68628758) extracted from Lotus japonicus Gifu genome v1.2.
GAAATCCACAACTCTACTAAAAAATATCTAACTCTCCCACTCCAAAAGCGCCACGATGTGCTTTCACCAACACATAGCTA CGTCAGCATTAGTTTTCCCGAACAGCTTACGTGTTCCGATCACAAACCGTTGATCTCGTGGACATTGATTCCCGGCCGTT GATTTCTCGGAGGCAAAAATTGTGGTTCCTGTAATTCTCGTTTTTCAGTTAAATACAACAACCTCAAAACATGCTAACCT TCTCTCTCATTCTCAGTTTCAGCTCCAGAAGATTCTTTCTGTGTAGATTCCTCAACTTCTTACACGATCAAAGGTACTCC TCATTGCTTCACTATTTTTTCTCTGAACTTTTGTTCCTTGAATTGATCATTTTGATTCTCCAAATTTTGTTTCAATACTT GCCCTGAATATGTGAATGTGACAAGCACATGTTGCTTCTTGTTTAGTTCTGATTAGTGGATGTTTGGATATCATTCTTGA TTCTAAATTTTTAATCAATTATGAGAAGAAGCTTATATGAGTAGCTTTTATGTGTCAGAATTAATTATGACTATGAGAAA ATAGAAGGTGATCCGAAGATGCTAAAAGAGGGTTGGTTGGTATGGGGTGATGTAAGAAAGGGTTGAGTGATGATCATTCG GATTTGACAATTGTTAAATTGAGTCTATTTCTGTTAAACTTTTTTAGGACATTTTTTAGTATGCGTTGTTTGGCCGCTGC TACTTAGTTGAAGGATCAAGGAGTAAATGCTATGCTTAGGAAAATGGATACCACTTTCTTCCTTTGGTTGGCAAGAATTT AATTTGCCCATGAACTAGATTGTCTATTATATGGGTTTGAACTTTGAAACCATTTTATAGCATGTTTGGATCAACTTCTC TTTTCTCATAATTAACTTTGACACCCAAAAGCTACTACGTACTCCCAGCAGATTCTTCCCAATTTATTTTCATCTTAGAA CCAATTATTGAATGGTTTCCAAAATTGCACTTACTTATGGATAAAGGCTATTGATGGCCAATATATACTTGTCCATGTAT TATTCTTTGGGTACTATTAATGTTGAGGTTGTCTCAAATGATTAATCAAGAGATTGTGCCTGTGGTTTGATTATCCTATG AAGCTATTATAGATGTGAACTTGTGTCAGCACATTTTGCTTTGGTGCTGTTGCTTGATCTTGGCATTGAAAGTTTGTTAT TTAAATTTCTTTCTACATTTGGATCAGGTAACTTGGTATGGGAGTTGTGACTGTTTCTAGCTCAGCTGCTCGGTCTCCAT TAGGATTGAATACCAAGTTTTCCAGTCACCATTCCGCACTGAAGAGACATTTAATCGTAGCGTTTAAAGGTGATAAGCCG AATGACTCAGCTTTGGTTGCGAATCGAGAAAAAAATCCCATGGCGATTGAAATGGCCAGGACGCAGAGGAAAAGGATAGG AAAAACTAGTAAAGTACCTAAGAAAGCGAGAGCTGTTACACAGGAAACTTCACCGTCTTCATTGGATGTAGACTACAGTG AAGCTGCTGCCATACTTGAAAATATATACAAACTCAGTCCTGCATCTGATACTGAAGACTGCAAAGATAGAAAAATTAAA AGAGTCTCCCGGAGGGGAAGGAGGGTCGGCGAAGACAGTGAAGAAAAAGAGGTAAAGAATGATAGGGTAGTCAGGAACAA GAATATGAAAGCAAAACGATTGAGTCTTAATGAGAGGATTGCAATGAAAAAGAACGAAAGTGGGGATGTAGATGTAGTCA TTCCAACTCGAAAGAAGAGAAATGTTCAAAACAGAGTCGAGAAGATTGATGAACTTGTTAGGGAATATTCAGGGACAACT GATCTAGCCAGTTTGGACTGGAAAAAAATGAGAATACCTGCAGTTCTTCCTTCTTCAGAACATGCTTGGTTGTTCAAATT GATGCAACCTATGAAGGTGAGCAGTTAATTCTCTGATTCTTTTTAAAATAGTAGTCTAGATCTTGTTATTGCTGATAGCA GGAAAACATTCAACTTCAATCTAGTAGCTTAAGCTGGAAGACAAGGCTCATACTTACTTTTATATCTAACATAATTCTTT ATGCTAGAGTCTTCTATAAAGGTCTTTAATTGTGGTTGCGGTCGTGGTTGCTGCTACGTTGCGGAATTGCAGACAAATGT GGGCTGATGTGGCTGCAATTGAGACCGTGATACGGACCCGCAATTAAAAACCCTATCATCTATACTTTTCGGAAGAACAA AATAATTTCATTACCACCACTGATGCTAAGCTAAATTACATATTAGAATGAGAATGGAGACATCAAGAATTCACATGTTG ATAGTATGATAAGCATTTTTTGTTTTTTTGCCACTGATGGCTTGGAGGTTAACTGATAACCTCCTGCAAAACCTAGTACC TGCAAAATTATTTCATACCTTTGGTAATATAGGGTTTCAAGGCTTTGATACCATTTGAAGAAAACTTCCAATACAGTTAA CATTAGGCAGAAAACTCGACATTGATTTTATTTCAGAGGTTAAGCTATAACTGTTGATTTTTAGGTATTTCTTCAAGTGA AGGATAGTTTACAGAAGGAGCAAGGAAGAGAACCAACAGAGGGGGAAATAGCTGATGCAACAAACATGAATGTCTCTCAA GTCAAGAAAGCGATAGAGGTTGGCCGAGCTGCAAGAAACAAGCTCATAAAGGTAATTTAAAGTGCTCATAACTTTACAAC TTGGCTTTCATCAAGTTTTGTAAGATGAGTTACATAATTTGCCTTCATTCCTCTTACTTTCCTTTTCTCTCTAGTGTGGA GCTGAAATTATTGGTGGATTATTTGAAATGAGTGAGTTATAGCAAGAATTAAGAAATTGTGGTGATATCTTTTGCAGCAC AACCTCCGGCTTGTCTTGTTTGTGATCAACAAATATTTTGCGGATTTCGCTAATGGACCAAGGTTTCAAGATCTTTGTCA GGCAGGGGTTAAGGGACTTATTACTGCAATTGATCGTTTTGAGCCAAACCGGAGATTTCGGCTATCTACATACAGTTTGT TTTGGATAAGACATGCTATCATTCGTTCCATGACCCTCTCAAGCTTCACACGTGTTCCCTTTGGACTTGAATCGGTATGC ATTTTTCTTACAATGCATGATGGTTAATGTTTTGGTTTAAACAGCATATGGTCTAATTGCTGCTACTTTATTTCAACTAG AAAATTCTTTGTTTTCATTGTCAACTTGTAATTCTTAAATCAATGAGTATATCATGCAATGGGTTGGAATAAAACTACAG TAGAATATGAAGAAAAATAATAATTGGTAGAAAACCCAAACTGTATTTCAGCCAAAGACATTCAAAGAAAATATGACTTT ATAAAATATTAGAGAAGAAATGAACTTGGATAATTGATTATGCTGTGCCTGTGTCTCAGCTTTGTTTAACTTCTCAACTG CTTTTTAGAGCAGGTTAGAGCGGAGATCCGGAGAGCTAAAGCCGAGTTAACAGTTGAGCTTCAAAGGCAACCAACGGAGG AAGAAATACTAGAAAAAGTTCAGATATCCCCTGAAAGATACCACGATGTAATGAAGGCTTCAAAGCCCGTTCTTTCGCTG CACTCGAGACATAAAACCACACAAGAAGAGCTTATTAATGGGGTTGTTGATGATGAGGGTGTTAATGGTGATAATCGGAA GCAACCTGCTCTACTAAGGCTTGCTCTAGATGATGTGGTAAGTGTAACAACTCAACCACTTGAGATTTTTTTTTTGATAT TGCATTGTTCACTATGATAGGTCATTCTATTAAATTTATTATTAGTATGATCATAGGAAAATTATATGGTGGACCATGTT AAAAACTGATTCATTCGTAAACCATGTTTTAACTACCAACATTTAGTACATGATATTTACAATATGCTCCTTATGTGCTA AAATTAATTTGTAGAGGAACGCTTTTAACTTGTAAACTAGATTTTTCTTGATTCACAGTAGACAAAGTCTGATCATAATT GGATTTGTTTAATGAATTAAGTCAGTCAAATTTGCATTCTTGTCAACAATAAAATATTGTTTCACTTCTTAAGTCCCATT TGGTGCCCTTCCTTGATGAACCATGGCTCATGGGCAATTGTGACTAAGCGTGTTTAGAAATTCTTCTACAATTGATTCAA AAGCTTAAACCAATTTTGGGAAGAAGCTTATGTGAGGAGTTTCCTGGTACCATATCCAAACATGTTGTAACCACCAAAGG CGTTGAACTCAGTAGAACTTTTCGGTTTAGGTCATACTTCAGTGATGTTTCTAATTCAATTACCTCATGTTTCCATTGTC ACTTTTTGCATCATAAATTTTGGTTTAATTTTATTTTCTTTGCTTTGTAGCTTGATTCCTTGAAGCCCAAAGAGAGCTTG GTGATAAGGCAGAGATTTGGACTTGATGGGAAGGGTGACAGAACGTTGGGAGAAATAGCTGGGAACTTGAATATTTCAAG GGAAATGGTAAGAAAGCACGAAGTCAAGGCTCTCATGAAGCTCAAGCATTCTGCTCGATTGGACTATCTTCGTCGCTATG TTGTATAAAAATTCAACTAATCTACATATATGCTTCCCTTATAGAAATAATTGTGCCATCATGGGAATCTCCATGCTTTA CCTAGTCCTACACTAGATTGTTAATTTGTATGTATCACCAGTCACTTGTATATTCATACTCTTGTATGATAGACTTGAAA TTGCACAACGTATATAACCCTATACAGTATACATGTTACTGTAATTGTTACATGTCATCCTTTAATGAAATTACATTCTT AGTTAACAATATTTGATCTTGAGCTGTGGAGAGCAGCCTCTTTTTGTGAAACGACTTTATGAAGTAATTTTTTTTTAAAC CCGGTTTCATTCAATTAAGAAGAAGTCATAGGCAAAAACATCATCTTGGATGATAGAGGTAATCTTCAAATGAGTCTCTT CAATCCAAATCATACAACCCAACCAAAAAGCTAAACGTGCCAATAATAAATTTACATGACGGCTCTAACACTTAAGCCTG TAATACTTATTGACCAAAAAAGAAAAACCTGTAATACTTGGTACACCTAAACAAAGTTAGGACTTTAGGAAATTAAGAAA ATTACGTGCAAACTCACCCCTAATATCATTAGTTATTTGAG
CDS sequence (LotjaGi1g1v0281500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGTTGTGACTGTTTCTAGCTCAGCTGCTCGGTCTCCATTAGGATTGAATACCAAGTTTTCCAGTCACCATTCCGC ACTGAAGAGACATTTAATCGTAGCGTTTAAAGGTGATAAGCCGAATGACTCAGCTTTGGTTGCGAATCGAGAAAAAAATC CCATGGCGATTGAAATGGCCAGGACGCAGAGGAAAAGGATAGGAAAAACTAGTAAAGTACCTAAGAAAGCGAGAGCTGTT ACACAGGAAACTTCACCGTCTTCATTGGATGTAGACTACAGTGAAGCTGCTGCCATACTTGAAAATATATACAAACTCAG TCCTGCATCTGATACTGAAGACTGCAAAGATAGAAAAATTAAAAGAGTCTCCCGGAGGGGAAGGAGGGTCGGCGAAGACA GTGAAGAAAAAGAGGTAAAGAATGATAGGGTAGTCAGGAACAAGAATATGAAAGCAAAACGATTGAGTCTTAATGAGAGG ATTGCAATGAAAAAGAACGAAAGTGGGGATGTAGATGTAGTCATTCCAACTCGAAAGAAGAGAAATGTTCAAAACAGAGT CGAGAAGATTGATGAACTTGTTAGGGAATATTCAGGGACAACTGATCTAGCCAGTTTGGACTGGAAAAAAATGAGAATAC CTGCAGTTCTTCCTTCTTCAGAACATGCTTGGTTGTTCAAATTGATGCAACCTATGAAGGTATTTCTTCAAGTGAAGGAT AGTTTACAGAAGGAGCAAGGAAGAGAACCAACAGAGGGGGAAATAGCTGATGCAACAAACATGAATGTCTCTCAAGTCAA GAAAGCGATAGAGGTTGGCCGAGCTGCAAGAAACAAGCTCATAAAGCACAACCTCCGGCTTGTCTTGTTTGTGATCAACA AATATTTTGCGGATTTCGCTAATGGACCAAGGTTTCAAGATCTTTGTCAGGCAGGGGTTAAGGGACTTATTACTGCAATT GATCGTTTTGAGCCAAACCGGAGATTTCGGCTATCTACATACAGTTTGTTTTGGATAAGACATGCTATCATTCGTTCCAT GACCCTCTCAAGCTTCACACGTGTTCCCTTTGGACTTGAATCGGTTAGAGCGGAGATCCGGAGAGCTAAAGCCGAGTTAA CAGTTGAGCTTCAAAGGCAACCAACGGAGGAAGAAATACTAGAAAAAGTTCAGATATCCCCTGAAAGATACCACGATGTA ATGAAGGCTTCAAAGCCCGTTCTTTCGCTGCACTCGAGACATAAAACCACACAAGAAGAGCTTATTAATGGGGTTGTTGA TGATGAGGGTGTTAATGGTGATAATCGGAAGCAACCTGCTCTACTAAGGCTTGCTCTAGATGATGTGCTTGATTCCTTGA AGCCCAAAGAGAGCTTGGTGATAAGGCAGAGATTTGGACTTGATGGGAAGGGTGACAGAACGTTGGGAGAAATAGCTGGG AACTTGAATATTTCAAGGGAAATGGTAAGAAAGCACGAAGTCAAGGCTCTCATGAAGCTCAAGCATTCTGCTCGATTGGA CTATCTTCGTCGCTATGTTGTATAA
Protein sequence (LotjaGi1g1v0281500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVVTVSSSAARSPLGLNTKFSSHHSALKRHLIVAFKGDKPNDSALVANREKNPMAIEMARTQRKRIGKTSKVPKKARAV TQETSPSSLDVDYSEAAAILENIYKLSPASDTEDCKDRKIKRVSRRGRRVGEDSEEKEVKNDRVVRNKNMKAKRLSLNER IAMKKNESGDVDVVIPTRKKRNVQNRVEKIDELVREYSGTTDLASLDWKKMRIPAVLPSSEHAWLFKLMQPMKVFLQVKD SLQKEQGREPTEGEIADATNMNVSQVKKAIEVGRAARNKLIKHNLRLVLFVINKYFADFANGPRFQDLCQAGVKGLITAI DRFEPNRRFRLSTYSLFWIRHAIIRSMTLSSFTRVPFGLESVRAEIRRAKAELTVELQRQPTEEEILEKVQISPERYHDV MKASKPVLSLHSRHKTTQEELINGVVDDEGVNGDNRKQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAG NLNISREMVRKHEVKALMKLKHSARLDYLRRYVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 513 | 513 | 2.2E-223 | – | |
| PANTHER | 1 | 513 | 513 | 2.2E-223 | – | |
| MobiDBLite | 64 | 86 | 23 | - | – | |
| Coils | 147 | 167 | 21 | - | – | |
| SUPERFAMILY | 199 | 347 | 149 | 2.98E-30 | ||
| Gene3D | 227 | 351 | 125 | 1.9E-28 | – | |
| Pfam | 237 | 275 | 39 | 8.3E-7 | ||
| TIGRFAM | 276 | 502 | 227 | 2.0E-23 | ||
| Pfam | 280 | 346 | 67 | 3.8E-10 | ||
| PRINTS | 307 | 320 | 14 | 4.6E-13 | ||
| PRINTS | 331 | 339 | 9 | 4.6E-13 | ||
| Gene3D | 355 | 429 | 75 | 3.2E-10 | ||
| SUPERFAMILY | 355 | 422 | 68 | 4.36E-9 | ||
| Coils | 359 | 379 | 21 | - | – | |
| Pfam | 364 | 431 | 68 | 3.9E-14 | ||
| SUPERFAMILY | 419 | 507 | 89 | 1.87E-17 | ||
| Gene3D | 437 | 514 | 78 | 3.8E-20 | ||
| Pfam | 449 | 502 | 54 | 1.5E-13 | ||
| PRINTS | 453 | 465 | 13 | 4.6E-13 | ||
| PRINTS | 474 | 489 | 16 | 4.6E-13 | ||
| PRINTS | 489 | 500 | 12 | 4.6E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | DNA-templated transcription, initiation | Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0281500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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