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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR014284
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 15 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 8.415s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0088429.1
n.a. PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max] gi|356516017|ref|XP_003526693.1| chr0 36122830 36127652 -
2 domain predictions
3 GO terms
Lj1g3v3330190.1
n.a. PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max] gi|356509511|ref|XP_003523491.1| chr1 37958535 37962830 -
2 domain predictions
3 GO terms
Lj1g3v4591010.1
n.a. PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like isoform X2 [Cicer arietinum] gi|502111209|ref|XP_004493986.1| chr1 54913688 54918230 +
2 domain predictions
3 GO terms
Lj3g3v0824880.1
n.a. RNA polymerase sigma factor [Medicago truncatula] gi|357458319|ref|XP_003599440.1| chr3 10309802 10313683 +
2 domain predictions
3 GO terms
Lj3g3v0824880.2
n.a. RNA polymerase sigma factor [Medicago truncatula] gi|357458317|ref|XP_003599439.1| chr3 10309802 10313683 +
2 domain predictions
3 GO terms
Lj3g3v3639960.1
n.a. PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max] gi|356543070|ref|XP_003539986.1| chr3 44335541 44339576 -
2 domain predictions
3 GO terms
Lj5g3v0657170.1
n.a. PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like isoform X1 [Cicer arietinum] gi|502111206|ref|XP_004493985.1| chr5 9051344 9055886 -
2 domain predictions
3 GO terms
Lj5g3v0659340.1
n.a. PREDICTED: RNA polymerase sigma factor rpoD [Glycine max] gi|356548319|ref|XP_003542550.1| chr5 9155878 9161217 -
2 domain predictions
3 GO terms
LotjaGi1g1v0281500.1
n.a. RNA polymerase sigma factor; TAIR: AT5G24120.1 sigma factor E; Swiss-Prot: sp|Q9ZNX9|SIGE_ARATH RNA polymerase sigma factor sigE, chloroplastic/mitochondrial; TrEMBL-Plants: tr|I1KAN0|I1KAN0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0281500 LjG1.1_chr1 68623598 68628758 -
2 domain predictions
3 GO terms
LotjaGi1g1v0556700.1
n.a. RNA polymerase sigma factor; TAIR: AT1G08540.1 RNApolymerase sigma subunit 2; Swiss-Prot: sp|O22056|SIGB_ARATH RNA polymerase sigma factor sigB; TrEMBL-Plants: tr|K7KHD7|K7KHD7_SOYBN RNA polymerase sigma factor; Found in the gene: LotjaGi1g1v0556700 LjG1.1_chr1 108876942 108881659 -
2 domain predictions
3 GO terms
LotjaGi1g1v0689200.1
n.a. RNA polymerase sigma factor; TAIR: AT2G36990.1 RNApolymerase sigma-subunit F; Swiss-Prot: sp|Q9LD95|SIGF_ARATH RNA polymerase sigma factor sigF, chloroplastic; TrEMBL-Plants: tr|A0A151TIX7|A0A151TIX7_CAJCA RNA polymerase sigma factor; Found in the gene: LotjaGi1g1v0689200 LjG1.1_chr1 125689612 125694637 -
2 domain predictions
3 GO terms
LotjaGi3g1v0119800.1
n.a. RNA polymerase sigma factor; TAIR: AT5G13730.1 sigma factor 4; Swiss-Prot: sp|Q9ZSL6|SIGD_ARATH RNA polymerase sigma factor sigD, chloroplastic; TrEMBL-Plants: tr|G7J0X0|G7J0X0_MEDTR RNA polymerase sigma factor; Found in the gene: LotjaGi3g1v0119800 LjG1.1_chr3 14660247 14664319 +
2 domain predictions
3 GO terms
LotjaGi3g1v0544500.1
n.a. RNA polymerase sigma factor; TAIR: AT1G64860.1 sigma factor A; Swiss-Prot: sp|O24629|SIGA_ARATH RNA polymerase sigma factor sigA; TrEMBL-Plants: tr|I1L5H1|I1L5H1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0544500 LjG1.1_chr3 96049641 96055390 -
2 domain predictions
3 GO terms
LotjaGi3g1v0544500.2
n.a. RNA polymerase sigma factor; TAIR: AT1G64860.1 sigma factor A; Swiss-Prot: sp|O24629|SIGA_ARATH RNA polymerase sigma factor sigA; TrEMBL-Plants: tr|I1L5H1|I1L5H1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0544500 LjG1.1_chr3 96050205 96054494 -
2 domain predictions
3 GO terms
LotjaGi5g1v0081100.1
n.a. RNA polymerase sigma factor; TAIR: AT2G36990.1 RNApolymerase sigma-subunit F; Swiss-Prot: sp|Q9LD95|SIGF_ARATH RNA polymerase sigma factor sigF, chloroplastic; TrEMBL-Plants: tr|V7BHJ9|V7BHJ9_PHAVU RNA polymerase sigma factor; Found in the gene: LotjaGi5g1v0081100 LjG1.1_chr5 13181631 13187204 +
2 domain predictions
3 GO terms