Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi1g1v0290100
Transcript ID	LotjaGi1g1v0290100.1
Related isoforms 3	LotjaGi1g1v0290100.2 LotjaGi1g1v0290100.3 LotjaGi1g1v0290100.4
Lotus japonicus genome version	Gifu v1.2
Description	Gamma-tubulin complex component; TAIR: AT5G17410.1 Spc97 / Spc98 family of spindle pole body (SBP) component; Swiss-Prot: sp\|Q9C5H9\|GACP2_ARATH Gamma-tubulin complex component 2; TrEMBL-Plants: tr\|A0A0R0FN05\|A0A0R0FN05_SOYBN Gamma-tubulin complex component; Found in the gene: LotjaGi1g1v0290100
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:70392918..70400905) extracted from Lotus japonicus Gifu genome v1.2.

ACATCCAATTACATCACTTTATTTTCCATTTTCAATATTTTTAATGATTATTTTACATATACATCCGATCACACATTTTC ATTTTCGACTTACAAACATTTTCAAATTTAATTTCGAGCTTTTGAATTTTGAAGCTCAGTCATATTGAGTTCACGCGCTC CATACCTCCGTTAATAGAGTTGAGAGAGAGATCGGAAGGGAGGTTCGACAGTTCTGAAACAAGTTTTGATTTCTAGGGTT CTGCTTCCGTTACCCTCAATTTCACCATGAACCAATCGACCACTGGGTTTCAAAACCCAATAGGTTATTACGATCCAGCA GTTCAGGTATGCTATGTGAGAATCAAGCGTTCTTCGAATTTCCATTTCGTTTTGTTCTCTGGTATTGCATTGGGTTTATG TATTGAAGTACTGTGGATGTCTGCATTCACTATCAATTTAGGGTCTCATTATTTAAGAGTTTGAGTTATTAGTTGTGTTT CCAAAATGTAGGAGCTTATTGTTATTGATGATGTGCTCTCGGCTATGGTTGCGGTTGAAGGACGATATATTTTAATCAAA ACGGTTCGCGGAAAGAAGGATGATGTTACTTTCCTGGTTGACCCTTCCATGGATTTGGCACTACAGGTGAGAGTTAGCGC GATTTCTCTACCGTATTTTGAGCAGTAATTAAAGCATTAGAGGTGCTAAACATCCGCATTTTGCTTCATGGCGATAGCGG ATAGTTATGATTGGATATTGGAGAAAGTTGCTAAACTGGAAATGGAAATGGAAATGCTTTCTACACAATTTATAGGTTAT TCGATATGTACAGTATCCTAACTTAATGCTCCCCATCATGGTGAAAGGCTCATTAGGTTCATCTAGATTTTTCTTTCCAT GTTTGTAAAAGCTCTTATTTCAACTGTGTAACTTTTCTAATGGAATTGAAGCTTATAAGTCTAGCTTAGAATTCAAATAA TGCAATGTTTTTTTCCTTAAATATTTTGCCTGATTTCGTCGGTGACTTAAATAAAGGTAATTGCTTTACACAATTTTGTT TTATAGTTTTGGACTTTGTTTTAAATTGTGGTCTGCTACCATACGTGTTTGGAGGTTTATGCAACAGCAACGAAGACACA AGTGAGAAGCTACTGGGGAATGTAAAACTGGCTTATGCTATGTTTGTATAACTTAGATAATGGACTGTATGATGAGATAC CATGATAGAGTGCCATTAATTGTGCCTGAATTAGTTTTTATGTTGCAGGAGTTGGCAAAGCGAATATTTCCTCTTTGTAG GAGCTATCTGTTGATCAACCAATTTGTGGAGTCAAGGTCTCAGTTCCAGAATGGTCTAGTTAATCATGCCTTTTCTGCTG CACTGAGGGCACTTCTTATCGTATGTTTTCCTGAACAGTGAGTCAGTTGGTCAATTTACACACACTGGTGGAACAATACT GGGTTATGTTTTAATGCTTCTTATAGTATACTGTCTGTTTTAGTAAATTTAATATGTTACTAGGTCCAAGTATTTGCATC TGAAATTTAGATTGAGGTGTTGATAGGCTACAACTAATCATTTAAATTTGAACGCCATCAATAAACAGAGGACTGCAAAA CAATTGAAATGAATGTTAGAGTTATACCTGACCAAAGCAGTTAGCAAATATAGAGACAGTCTATTTCTCTTCGTAGAATA AAAATTAGGAAGATGAAAAATATTAAAAGGCTAGGACTCTAGGAGGCGATAGTCAAAATTAAAAGGTGGGATGAGTAGGC CAGCAGCAACCAGATGACAGTTATAAGAGACAAAAACCAGTACTATAGCATAAAGTAACCAAATTGATGTTCACCCTCTG TTGCAGTTCTTTATATATCATACCTTTCGATTACAATATTCAATTTGAATAAGAACCTACTTTTTCTATTATGGGATTAT CTTTACCAGGATTACCAGGCCATGGTGGCACAGCTTGAGCACCAATTTCGTCTTGGGAGACTTTCCCTTCAAGGATTATG GTTCTACTGTCAGGTGTGGAGTTGTCTACTTGTCTTGACCTAAAAGAAAATGTTTGTCAATAGTTGCTGATTGTACTTTC AATTGTGTGTTTCAGCCGATGATGAGGTCAATGCAGGCATTATCTACTGTCATACAGATGGCTTCAGTCAACAATTTTTC TGGTTCTGCTGTGCTTAACTTACTGCAGAGTCAGGCAAGGAAACTTTCTTGCATTGTTACCGTTCTCTATATATGTCCAA AAACTTCCCTTTAGTGTCAAGAATTAGTTTCTTAAGCAATTTATTCTCTCCTCTGTGGCTTCTATTGTAACTAGGCAAAG GCTATGGCGGGAGATAATGCTGTCAGGTTATTGCTAGACAAGATGGCACAATGTGCAAGTAGTGCTTACATGAGCATATT AGAAAGGTTGCTCTTTTTCTCCTTCCGACTAATAAATATGTAGATTTTGTTCTTTTCCAGCTTCCCTCTCCTTTGAGTTT TTGGGTATGTTTGGGTGTAAGGATTAGGGAATGGAAGGAGTTAAAGGAAAAAATGGAAGAGAAAGGGAAGGAAAAGAATG AGGGGGGTTAAATAATTATTTTGCTTCCTTTTGTTTGGATGTTTAGAAAATGTTTGTAAAAGTGAATATAGTTTGGTTTT GCTGGATCACTTGAAAACCCTTCATTTACTTTCCATTCTTTCGTGAAACTCCTAGTCTCCTAAGCATAAGGAAGGTCTGA CCTTCCTTTTCCCTGCTTTCTTTTTCCACTTCCTTCATCTAATCAAAACTCTTAATGCTCACACATAGCCTTAGCCATGC TAACTTATCCAATCTTTTCCCTAACCCCTCACCAGGTCTTACGACCTCTCATATAAAAAAATAAACAGTTAATCCTACTT CCTTTATCTGATGACTAATGTGTAGACAAGCAATATACCAAATCAGATTGATTTTTGTATTTTTGTCATTTACCACAAAT AAACTTCCACTGTTGTGCGTGCGTGTCTTTCGTCATTGCATTTCTCAGTTGTTAGTCATATTTGTTCTATTGGTCTATTA CACTCACGTATTACTATGATTTAGACTTTTCTTTAATATAGATTTGTTGATAAATGGACATCAGTTAGCACTTGGCAAGG TTGCTTTAAAGAAGACCTTTGATGCAATATAAAAATGGTTTGCTCTTTTGGTGGCACAAAATTAACCTTGTCTTGTGTGC TGTTTTTATCATGCGTTGACTCTAATGAGCACTCTGCTTTCTTGTCCATTTGGGAAATTACAATATTGAAGATGGGTCTA TGAAGGAGTGATAGATGATCCCTATGGTGAATTTTCATCGCAGAGGACAATCTCCAAGAGAAAAATTCTAAAACCACTTA TAGCAGCCCAACATTGATAGCAAAACTTGTTTTTCCATATGGTCTCAGTTTCAAATTCTCTGTAGGATAGTCTCACCCAA GATTATGAAGCTAAGTATTGGCGACAACGTTACAGCCTCAAAGATGGAATTCCTAGTTTCCTTGCAAATATTGCGGGGAC AATTTTGACCACGGGGAAATATCTAAATGTCATGAGAGAGTGTGGGCATAATGTTCAGGTTTTGTTACTGTTATATTTTG TATATAGACTACTAAATTTATCTTCTCAGTCCTTCACATTGAAGGGTGCTTGAGAATATTTTATTGTTTTACAAGTGGTT GCTTCACTAAACGTAGTTACTTGTTACTTTAGGTCCCTCCATCAGAAAATTCAAAATTAATGAGCTTGGGTTCAAATCAT CATTATCTTGAATGTATTAAGGCTGCTTATAACTTTGCAAGTGGTGAACTCTTGAATCTCATCAAGGAAAAGGTGAGGTT GAATACTTATTAGGCAATAAAAATCTATGATTACATTCTAATGCTCCTGCAATTGTTATTGTTAAAGTCCAAGTTCTAAT GATGAAATATGTTTCTATGTTTAGTATGATCTAACCGGAAGGCTGCGGTCTATAAAACACTACCTTCTTCTTGATCAGGT ATGATCATGGTCTTCTTACAATGTTCAATTTTAGACAATAACTAGTAATGCTGGAAAGCTAAAGCAGTATAAAGGATCAA AATTTAAGGGCGTGTTTGATTTGTGCTTTTATATTTAGCTGATATGTTTTCACTAATAATTACAAAAATGTCAATTTGTT TTCACTTTGTTTCCTGTTGCAGAATTTGCAAAGGAAATGGGACAACAAACATGAAATGTAGTGAAAGTTACGTGACATTT TTGTGATTTATATAAATATATCAATTGAAAATGAAAGTAAAAAACAAACCAAACGCTCCACAAGCATAATTGGATTATTC CTCTCATGCTTTTCATGTGACGAGTTCCGGAATGTTAGATGCGATTTCTTACTTGTGTTTTGAAGGCCTATGATAGTTTT GAATGGAAGAAAACAATAAACAGATTAAAATGCCGATTAGGGGTAGGAATGAGCCAAAGAGCTTGTTGGGGCCTATGGCC TGGACTCATTAGGTCTATGTCAGGTTTGTTTACTCATTAAACTAGGTCAAGAATGTTTTAAAAGCCTATTTAGCTAAAAG GATTATACAAGCTATCCAAAATTCCGGCTTAATTAAGTAGATATAAGTAATATAATACTATTTTTTATCATTGTATTAGA TTATTTTTATAATATTTAAAATTATATACCTGTTGATCTATTAAAAAATGTAAGTCTGTTGGCTTAAGAGAGACTTGAGC CCATAAGTTTATTTAGAGATAGACTTGTGATCTATTTAACAGCCTTATTACAAAATATGTTTTAAAATAGACTTTAATTT TAATCAATATGGGTCTCAATAGCTTTGAGCTCAAGAAATAACAGATTCAGAGAACATTTAAAAACCAGGTATTGCGATCT ACGTGTCGTTTAGTGGCATGTGATGCTCTCTCCCTGTCCTTTGTTCTCCGAGCTCTTGCTAAAAGAACAATTGAACAAGC ATTTTGGAAAGGTGGTCTAACTGAGAGTTAGCTGAAGTTGTGGATCTGTATTATGTGCAAATAGTTGTATGCTGAAAAAA TAAACTTTTGCAGAATGGTAGTCTTTGCATTGAACATTATGAGTTTCAGTTTTTCATGGTTTCTTTCGTTGGAATATATA TAGGGCTGATCAGGTGAGTACAGAGAAGGGACCTTGTAAGAAAATATTCAGCTGGTTTGAATTTCACATACCTAGGCCTT ACATTGTATGACATATTATATAGTGATTTCTTCTTTCTCTTGGAAGTCAATTCTCAATGTCACAATTATAATGTACACTC ACTTTTTCTTGCCTGATTTTTTATAATGTTCATGCTCACACAGGGTGATTTCTTAGTACATTTTATGGATATTGCTCGAG ACGAGCTAGCTAAAAAGCCTGATGAAGTCTCAGTTGAGAAGCTGCAGGTATTGTTATAGGATGTTCTTTACTTTACCATA CAACTTTTTACCTCTTAGTAATTTTAAGTTAGCATCTGTGTTAGGATCCGAAAATCCTAACCTTAAAATAAATTAAATCT AATATAATTAATCCTAACAATCTGTCTATTTCAATTTTGAAATGTTGCCAGTTACTAATTATGTGCTTTTCCTTTCTCGT TTGTTTTGTTTTTTCCCTCACCCCTGGTATGACAGTCTCTTCTAGACCTTGCTTTGCGTACTACAGCAGCTGCAGCAGAT CCTTTTCATGAAGGCTTGACCTGTGTGGTGGCAAGTAACAAATTCATCTTGTTAGAAACTCTTTTGGGGCTGTAAATATT AGTATTCACACATTACAAATTGTATACTTTCAGGAAAGGTCTTCTTTGCTTAAAAGGTTGGGCACCTTTAATGATCTTGA AGTTAGTCAGCGAAATTCTGGCAACAATGATCTTCTTGAAGAACCTGTTAGCATCACTTGCCTTGAAACATTTTCACTAA GTTATAAGGTTGTTTTCTACTCTTTAAGTTTCTGAGAGTGTTTAAATTTTTTTTAGTTGTATCATTTTGATGATTCTGTT TTTGGTTGGTTTCAGGTGCACTGGCCATTGTCTATAGTATTATCACGTAAAGCCCTTACAAAGTACCAGTTAATTTTTCG ATTTCTCTTCCACTGTAAACATGTTGACCGTCAGCTGTGTGGAGCATGGCAAGTACATCAAGTATGGCTCTGAGTGCTTT TACATCACTTGGTCTGTTATATTTATCTCTTTTTCACCTCCATTTTGCTCCCATATTACAGGGAGTTCGTGCTCTCAATA CACATGGAACTGCTATCTCCAGATCATCTCTTCTTTGTCGTAGTATGCTTAAATTTATCAATAGCCTTTTGCACTATTTA ACATTTGAGGCAAGTTTTACTTCTCTTTATATGTGTGTGCGTGTGTGTATCTGCACTCGCTCTTTCTAAGATGACATTTA TTGCAACCAGATTTTTGTATGAGTGTGTTATCTGTGTTCGCTCTTCTTAAGTGCACATCATTGAGACCAAATTTTTGTAT GTGCTCTAAAATTTTATTTTTAAGACCAAAGTTTGTAGAATCAGATACAAGTGTCACTTTTGCTTCTTTCTTTTTCTTAA ATGTTCCTTAACTGAGCAGTAAGGTCATTGGTTTATGACTATAGCTTATTTTATAGGTTATTGAACCCAACTGGCATCTG ATGTACAACAGACTTCAGTCAGCAAATAGCATAGATGAGGCAAGTTTTTGTTATTTTGCATTTCAAAACTGATGTTTAGT ACCACTTACATACTTGCATGTCTTTCTGTTCCTGGGTGAATTTTTCTCTTTTAGGAAGCTTGAGAAAGTCTGACATTCTC TATCTGAAACAGGTTATACAACATCATGATTTTTTCCTTGATAAATGTTTGAGAGAATGTTTACTTCTTTTACCTGAGCT GCTGAAGGTTAGTTTCACTCGGTTTTCTTTTTATAAAAGGTTCTCTTTGTTTTTTACTCGAATGGTTATGCAGTTATTAT TTTGGGTACTAAAAAGTATCACTTGTCAAGAATCCTGAATCAGATATAGGTGTGAAAGAGATATCTTGTAACAGGAGGTG CCTAATAGAAACTCGATAAGATCATACATTAAACACAGAAAACAGTAGTATGTTATTACTCTCATGTAGGCTTACCAATA TCAAGGTTATGACTGGGATCTTTAGAATACTCCTTGTGAAACAGCAGGGATAGGTCAATTACATTAGTAGAAAAGTCTAG TTTAGTTGAAAATATAACATCTGAGTGCCTACATTTCCTAAATCTTATCAATTGCAGAAGGTGGAGAGGCTTAAGTCCAT GTGCCTTCAGTATGCAGCAGCAACTCAGTGGCTTATATCATCATCTATTGTATTACATAGCCCAGAGGAACCTAATGATG ATTCAGTTAGATCCAAGCAACGGAAATCAGGTCAGATCCTGAAGTCAACCACCAACAATGCGGCAGTCACTGATTCTGTT CTGTAAGTCCAAAAACAATAAATTTTTATTTATTTTATACTCATCATTTCACGTCTCATGAGCATTCTGACCAAAATAAA TCAATGCAGCAAATTTGAGAAGGAATTTAATGCTGAACTTCAGAGTCTTGGATCAGTCTTGAGTAGTAGCTCCCATGCAG AGCCGTATCTGGCCCATCTTGCACAATGGATTCTTGGTGTGAAACATGAACGTAATGGTTTGTGATTCGTTTTAACTGGA TTATCTGTAATATACTTAATCAATCGTGTGTATGTTACTGTAATTTTCGAGTGTGGGTGTTAACTCTGCATTTTTGTAAT CCCCGAGCACTTTGTGGATTGAATTCAAATATACTTGGGTTCTTTTTATTGAAAATGTTTAGGTTTCAGTTTCACTATTA ATTTTAATGCATAACAATGCGAAGAAATCCTGTAAAACGCAAGTGATTTTAAAGATTAGGAGATTGGAAAAATCAAAAGA TAGAAGAATCAAAATAACAAATGTAAACGAAACATTGCATTCAATTATAAAGAGTTTCACAACATGCT

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0290100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAACCAATCGACCACTGGGTTTCAAAACCCAATAGGTTATTACGATCCAGCAGTTCAGGAGCTTATTGTTATTGATGA TGTGCTCTCGGCTATGGTTGCGGTTGAAGGACGATATATTTTAATCAAAACGGTTCGCGGAAAGAAGGATGATGTTACTT TCCTGGTTGACCCTTCCATGGATTTGGCACTACAGGAGTTGGCAAAGCGAATATTTCCTCTTTGTAGGAGCTATCTGTTG ATCAACCAATTTGTGGAGTCAAGGTCTCAGTTCCAGAATGGTCTAGTTAATCATGCCTTTTCTGCTGCACTGAGGGCACT TCTTATCGATTACCAGGCCATGGTGGCACAGCTTGAGCACCAATTTCGTCTTGGGAGACTTTCCCTTCAAGGATTATGGT TCTACTGTCAGCCGATGATGAGGTCAATGCAGGCATTATCTACTGTCATACAGATGGCTTCAGTCAACAATTTTTCTGGT TCTGCTGTGCTTAACTTACTGCAGAGTCAGGCAAAGGCTATGGCGGGAGATAATGCTGTCAGGTTATTGCTAGACAAGAT GGCACAATGTGCAAGTAGTGCTTACATGAGCATATTAGAAAGATGGGTCTATGAAGGAGTGATAGATGATCCCTATGGTG AATTTTCATCGCAGAGGACAATCTCCAAGAGAAAAGATAGTCTCACCCAAGATTATGAAGCTAAGTATTGGCGACAACGT TACAGCCTCAAAGATGGAATTCCTAGTTTCCTTGCAAATATTGCGGGGACAATTTTGACCACGGGGAAATATCTAAATGT CATGAGAGAGTGTGGGCATAATGTTCAGGTCCCTCCATCAGAAAATTCAAAATTAATGAGCTTGGGTTCAAATCATCATT ATCTTGAATGTATTAAGGCTGCTTATAACTTTGCAAGTGGTGAACTCTTGAATCTCATCAAGGAAAAGTATGATCTAACC GGAAGGCTGCGGTCTATAAAACACTACCTTCTTCTTGATCAGGGTGATTTCTTAGTACATTTTATGGATATTGCTCGAGA CGAGCTAGCTAAAAAGCCTGATGAAGTCTCAGTTGAGAAGCTGCAGTCTCTTCTAGACCTTGCTTTGCGTACTACAGCAG CTGCAGCAGATCCTTTTCATGAAGGCTTGACCTGTGTGGTGGAAAGGTCTTCTTTGCTTAAAAGGTTGGGCACCTTTAAT GATCTTGAAGTTAGTCAGCGAAATTCTGGCAACAATGATCTTCTTGAAGAACCTGTTAGCATCACTTGCCTTGAAACATT TTCACTAAGTTATAAGGTGCACTGGCCATTGTCTATAGTATTATCACGTAAAGCCCTTACAAAGTACCAGTTAATTTTTC GATTTCTCTTCCACTGTAAACATGTTGACCGTCAGCTGTGTGGAGCATGGCAAGTACATCAAGGAGTTCGTGCTCTCAAT ACACATGGAACTGCTATCTCCAGATCATCTCTTCTTTGTCGTAGTATGCTTAAATTTATCAATAGCCTTTTGCACTATTT AACATTTGAGGTTATTGAACCCAACTGGCATCTGATGTACAACAGACTTCAGTCAGCAAATAGCATAGATGAGGTTATAC AACATCATGATTTTTTCCTTGATAAATGTTTGAGAGAATGTTTACTTCTTTTACCTGAGCTGCTGAAGAAGGTGGAGAGG CTTAAGTCCATGTGCCTTCAGTATGCAGCAGCAACTCAGTGGCTTATATCATCATCTATTGTATTACATAGCCCAGAGGA ACCTAATGATGATTCAGTTAGATCCAAGCAACGGAAATCAGGTCAGATCCTGAAGTCAACCACCAACAATGCGGCAGTCA CTGATTCTGTTCTCAAATTTGAGAAGGAATTTAATGCTGAACTTCAGAGTCTTGGATCAGTCTTGAGTAGTAGCTCCCAT GCAGAGCCGTATCTGGCCCATCTTGCACAATGGATTCTTGGTGTGAAACATGAACGTAATGGTTTGTGA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0290100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNQSTTGFQNPIGYYDPAVQELIVIDDVLSAMVAVEGRYILIKTVRGKKDDVTFLVDPSMDLALQELAKRIFPLCRSYLL INQFVESRSQFQNGLVNHAFSAALRALLIDYQAMVAQLEHQFRLGRLSLQGLWFYCQPMMRSMQALSTVIQMASVNNFSG SAVLNLLQSQAKAMAGDNAVRLLLDKMAQCASSAYMSILERWVYEGVIDDPYGEFSSQRTISKRKDSLTQDYEAKYWRQR YSLKDGIPSFLANIAGTILTTGKYLNVMRECGHNVQVPPSENSKLMSLGSNHHYLECIKAAYNFASGELLNLIKEKYDLT GRLRSIKHYLLLDQGDFLVHFMDIARDELAKKPDEVSVEKLQSLLDLALRTTAAAADPFHEGLTCVVERSSLLKRLGTFN DLEVSQRNSGNNDLLEEPVSITCLETFSLSYKVHWPLSIVLSRKALTKYQLIFRFLFHCKHVDRQLCGAWQVHQGVRALN THGTAISRSSLLCRSMLKFINSLLHYLTFEVIEPNWHLMYNRLQSANSIDEVIQHHDFFLDKCLRECLLLLPELLKKVER LKSMCLQYAAATQWLISSSIVLHSPEEPNDDSVRSKQRKSGQILKSTTNNAAVTDSVLKFEKEFNAELQSLGSVLSSSSH AEPYLAHLAQWILGVKHERNGL

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR19302:SF13 View details on PTHR19302:SF13 Search for proteins/transripts with this domain View external data on PTHR19302:SF13	6	659	654	1.1E-258	–
PANTHER	PTHR19302 View details on PTHR19302 Search for proteins/transripts with this domain View external data on PTHR19302	6	659	654	1.1E-258	IPR007259 Show description in modal box View details on IPR007259 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF17681 View details on PF17681 Search for proteins/transripts with this domain View external data on PF17681	25	316	292	3.7E-63	IPR041470 Show description in modal box View details on IPR041470 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF04130 View details on PF04130 Search for proteins/transripts with this domain View external data on PF04130	319	649	331	2.0E-66	IPR040457 Show description in modal box View details on IPR040457 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:1.20.120.1900 View details on G3DSA:1.20.120.1900 Search for proteins/transripts with this domain View external data on G3DSA:1.20.120.1900	319	656	338	1.5E-75	IPR042241 Show description in modal box View details on IPR042241 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0000226 View details of GO:0000226 AmiGO InterPro QuickGO	Biological process	Microtubule cytoskeleton organization	A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins.	Subterm of View details of GO:0007010 View details of GO:0007017
GO:0000922 View details of GO:0000922 AmiGO InterPro QuickGO	Cellular component	Spindle pole	Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules.	Subterm of View details of GO:0044430 Part of View details of GO:0005819
GO:0005815 View details of GO:0005815 AmiGO InterPro QuickGO	Cellular component	Microtubule organizing center	An intracellular structure that can catalyze gamma-tubulin-dependent microtubule nucleation and that can anchor microtubules by interacting with their minus ends, plus ends or sides.	Subterm of View details of GO:0044430 Part of View details of GO:0015630
GO:0007020 View details of GO:0007020 AmiGO InterPro QuickGO	Biological process	Microtubule nucleation	The process in which tubulin alpha-beta heterodimers begin aggregation to form an oligomeric tubulin structure (a microtubule seed). Microtubule nucleation is the initiating step in the formation of a microtubule in the absence of any existing microtubules ('de novo' microtubule formation).	Subterm of View details of GO:0000226 Part of View details of GO:0046785
GO:0043015 View details of GO:0043015 AmiGO InterPro QuickGO	Molecular function	Gamma-tubulin binding	Interacting selectively and non-covalently with the microtubule constituent protein gamma-tubulin.	Subterm of View details of GO:0015631

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0290100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi1g1v0290100.1