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LotjaGi1g1v0290100.2

Overview

Field Value
Gene ID LotjaGi1g1v0290100
Transcript ID LotjaGi1g1v0290100.2
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Gamma-tubulin complex component; TAIR: AT5G17410.2 Spc97 / Spc98 family of spindle pole body (SBP) component; Swiss-Prot: sp|Q9C5H9|GACP2_ARATH Gamma-tubulin complex component 2; TrEMBL-Plants: tr|A0A0R0FN05|A0A0R0FN05_SOYBN Gamma-tubulin complex component; Found in the gene: LotjaGi1g1v0290100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:70393044..70400692) extracted from Lotus japonicus Gifu genome v1.2.

CTGAAACAAGTTTTGATTTCTAGGGTTCTGCTTCCGTTACCCTCAATTTCACCATGAACCAATCGACCACTGGGTTTCAA AACCCAATAGGTTATTACGATCCAGCAGTTCAGGTATGCTATGTGAGAATCAAGCGTTCTTCGAATTTCCATTTCGTTTT GTTCTCTGGTATTGCATTGGGTTTATGTATTGAAGTACTGTGGATGTCTGCATTCACTATCAATTTAGGGTCTCATTATT TAAGAGTTTGAGTTATTAGTTGTGTTTCCAAAATGTAGGAGCTTATTGTTATTGATGATGTGCTCTCGGCTATGGTTGCG GTTGAAGGACGATATATTTTAATCAAAACGGTTCGCGGAAAGAAGGATGATGTTACTTTCCTGGTTGACCCTTCCATGGA TTTGGCACTACAGGTGAGAGTTAGCGCGATTTCTCTACCGTATTTTGAGCAGTAATTAAAGCATTAGAGGTGCTAAACAT CCGCATTTTGCTTCATGGCGATAGCGGATAGTTATGATTGGATATTGGAGAAAGTTGCTAAACTGGAAATGGAAATGGAA ATGCTTTCTACACAATTTATAGGTTATTCGATATGTACAGTATCCTAACTTAATGCTCCCCATCATGGTGAAAGGCTCAT TAGGTTCATCTAGATTTTTCTTTCCATGTTTGTAAAAGCTCTTATTTCAACTGTGTAACTTTTCTAATGGAATTGAAGCT TATAAGTCTAGCTTAGAATTCAAATAATGCAATGTTTTTTTCCTTAAATATTTTGCCTGATTTCGTCGGTGACTTAAATA AAGGTAATTGCTTTACACAATTTTGTTTTATAGTTTTGGACTTTGTTTTAAATTGTGGTCTGCTACCATACGTGTTTGGA GGTTTATGCAACAGCAACGAAGACACAAGTGAGAAGCTACTGGGGAATGTAAAACTGGCTTATGCTATGTTTGTATAACT TAGATAATGGACTGTATGATGAGATACCATGATAGAGTGCCATTAATTGTGCCTGAATTAGTTTTTATGTTGCAGGAGTT GGCAAAGCGAATATTTCCTCTTTGTAGGAGCTATCTGTTGATCAACCAATTTGTGGAGTCAAGGTCTCAGTTCCAGAATG GTCTAGTTAATCATGCCTTTTCTGCTGCACTGAGGGCACTTCTTATCGTATGTTTTCCTGAACAGTGAGTCAGTTGGTCA ATTTACACACACTGGTGGAACAATACTGGGTTATGTTTTAATGCTTCTTATAGTATACTGTCTGTTTTAGTAAATTTAAT ATGTTACTAGGTCCAAGTATTTGCATCTGAAATTTAGATTGAGGTGTTGATAGGCTACAACTAATCATTTAAATTTGAAC GCCATCAATAAACAGAGGACTGCAAAACAATTGAAATGAATGTTAGAGTTATACCTGACCAAAGCAGTTAGCAAATATAG AGACAGTCTATTTCTCTTCGTAGAATAAAAATTAGGAAGATGAAAAATATTAAAAGGCTAGGACTCTAGGAGGCGATAGT CAAAATTAAAAGGTGGGATGAGTAGGCCAGCAGCAACCAGATGACAGTTATAAGAGACAAAAACCAGTACTATAGCATAA AGTAACCAAATTGATGTTCACCCTCTGTTGCAGTTCTTTATATATCATACCTTTCGATTACAATATTCAATTTGAATAAG AACCTACTTTTTCTATTATGGGATTATCTTTACCAGGATTACCAGGCCATGGTGGCACAGCTTGAGCACCAATTTCGTCT TGGGAGACTTTCCCTTCAAGGATTATGGTTCTACTGTCAGGTGTGGAGTTGTCTACTTGTCTTGACCTAAAAGAAAATGT TTGTCAATAGTTGCTGATTGTACTTTCAATTGTGTGTTTCAGCCGATGATGAGGTCAATGCAGGCATTATCTACTGTCAT ACAGATGGCTTCAGTCAACAATTTTTCTGGTTCTGCTGTGCTTAACTTACTGCAGAGTCAGGCAAGGAAACTTTCTTGCA TTGTTACCGTTCTCTATATATGTCCAAAAACTTCCCTTTAGTGTCAAGAATTAGTTTCTTAAGCAATTTATTCTCTCCTC TGTGGCTTCTATTGTAACTAGGCAAAGGCTATGGCGGGAGATAATGCTGTCAGGTTATTGCTAGACAAGATGGCACAATG TGCAAGTAGTGCTTACATGAGCATATTAGAAAGGTTGCTCTTTTTCTCCTTCCGACTAATAAATATGTAGATTTTGTTCT TTTCCAGCTTCCCTCTCCTTTGAGTTTTTGGGTATGTTTGGGTGTAAGGATTAGGGAATGGAAGGAGTTAAAGGAAAAAA TGGAAGAGAAAGGGAAGGAAAAGAATGAGGGGGGTTAAATAATTATTTTGCTTCCTTTTGTTTGGATGTTTAGAAAATGT TTGTAAAAGTGAATATAGTTTGGTTTTGCTGGATCACTTGAAAACCCTTCATTTACTTTCCATTCTTTCGTGAAACTCCT AGTCTCCTAAGCATAAGGAAGGTCTGACCTTCCTTTTCCCTGCTTTCTTTTTCCACTTCCTTCATCTAATCAAAACTCTT AATGCTCACACATAGCCTTAGCCATGCTAACTTATCCAATCTTTTCCCTAACCCCTCACCAGGTCTTACGACCTCTCATA TAAAAAAATAAACAGTTAATCCTACTTCCTTTATCTGATGACTAATGTGTAGACAAGCAATATACCAAATCAGATTGATT TTTGTATTTTTGTCATTTACCACAAATAAACTTCCACTGTTGTGCGTGCGTGTCTTTCGTCATTGCATTTCTCAGTTGTT AGTCATATTTGTTCTATTGGTCTATTACACTCACGTATTACTATGATTTAGACTTTTCTTTAATATAGATTTGTTGATAA ATGGACATCAGTTAGCACTTGGCAAGGTTGCTTTAAAGAAGACCTTTGATGCAATATAAAAATGGTTTGCTCTTTTGGTG GCACAAAATTAACCTTGTCTTGTGTGCTGTTTTTATCATGCGTTGACTCTAATGAGCACTCTGCTTTCTTGTCCATTTGG GAAATTACAATATTGAAGATGGGTCTATGAAGGAGTGATAGATGATCCCTATGGTGAATTTTCATCGCAGAGGACAATCT CCAAGAGAAAAATTCTAAAACCACTTATAGCAGCCCAACATTGATAGCAAAACTTGTTTTTCCATATGGTCTCAGTTTCA AATTCTCTGTAGGATAGTCTCACCCAAGATTATGAAGCTAAGTATTGGCGACAACGTTACAGCCTCAAAGATGGAATTCC TAGTTTCCTTGCAAATATTGCGGGGACAATTTTGACCACGGGGAAATATCTAAATGTCATGAGAGAGTGTGGGCATAATG TTCAGGTTTTGTTACTGTTATATTTTGTATATAGACTACTAAATTTATCTTCTCAGTCCTTCACATTGAAGGGTGCTTGA GAATATTTTATTGTTTTACAAGTGGTTGCTTCACTAAACGTAGTTACTTGTTACTTTAGGTCCCTCCATCAGAAAATTCA AAATTAATGAGCTTGGGTTCAAATCATCATTATCTTGAATGTATTAAGGCTGCTTATAACTTTGCAAGTGGTGAACTCTT GAATCTCATCAAGGAAAAGGTGAGGTTGAATACTTATTAGGCAATAAAAATCTATGATTACATTCTAATGCTCCTGCAAT TGTTATTGTTAAAGTCCAAGTTCTAATGATGAAATATGTTTCTATGTTTAGTATGATCTAACCGGAAGGCTGCGGTCTAT AAAACACTACCTTCTTCTTGATCAGGTATGATCATGGTCTTCTTACAATGTTCAATTTTAGACAATAACTAGTAATGCTG GAAAGCTAAAGCAGTATAAAGGATCAAAATTTAAGGGCGTGTTTGATTTGTGCTTTTATATTTAGCTGATATGTTTTCAC TAATAATTACAAAAATGTCAATTTGTTTTCACTTTGTTTCCTGTTGCAGAATTTGCAAAGGAAATGGGACAACAAACATG AAATGTAGTGAAAGTTACGTGACATTTTTGTGATTTATATAAATATATCAATTGAAAATGAAAGTAAAAAACAAACCAAA CGCTCCACAAGCATAATTGGATTATTCCTCTCATGCTTTTCATGTGACGAGTTCCGGAATGTTAGATGCGATTTCTTACT TGTGTTTTGAAGGCCTATGATAGTTTTGAATGGAAGAAAACAATAAACAGATTAAAATGCCGATTAGGGGTAGGAATGAG CCAAAGAGCTTGTTGGGGCCTATGGCCTGGACTCATTAGGTCTATGTCAGGTTTGTTTACTCATTAAACTAGGTCAAGAA TGTTTTAAAAGCCTATTTAGCTAAAAGGATTATACAAGCTATCCAAAATTCCGGCTTAATTAAGTAGATATAAGTAATAT AATACTATTTTTTATCATTGTATTAGATTATTTTTATAATATTTAAAATTATATACCTGTTGATCTATTAAAAAATGTAA GTCTGTTGGCTTAAGAGAGACTTGAGCCCATAAGTTTATTTAGAGATAGACTTGTGATCTATTTAACAGCCTTATTACAA AATATGTTTTAAAATAGACTTTAATTTTAATCAATATGGGTCTCAATAGCTTTGAGCTCAAGAAATAACAGATTCAGAGA ACATTTAAAAACCAGGTATTGCGATCTACGTGTCGTTTAGTGGCATGTGATGCTCTCTCCCTGTCCTTTGTTCTCCGAGC TCTTGCTAAAAGAACAATTGAACAAGCATTTTGGAAAGGTGGTCTAACTGAGAGTTAGCTGAAGTTGTGGATCTGTATTA TGTGCAAATAGTTGTATGCTGAAAAAATAAACTTTTGCAGAATGGTAGTCTTTGCATTGAACATTATGAGTTTCAGTTTT TCATGGTTTCTTTCGTTGGAATATATATAGGGCTGATCAGGTGAGTACAGAGAAGGGACCTTGTAAGAAAATATTCAGCT GGTTTGAATTTCACATACCTAGGCCTTACATTGTATGACATATTATATAGTGATTTCTTCTTTCTCTTGGAAGTCAATTC TCAATGTCACAATTATAATGTACACTCACTTTTTCTTGCCTGATTTTTTATAATGTTCATGCTCACACAGGGTGATTTCT TAGTACATTTTATGGATATTGCTCGAGACGAGCTAGCTAAAAAGCCTGATGAAGTCTCAGTTGAGAAGCTGCAGGTATTG TTATAGGATGTTCTTTACTTTACCATACAACTTTTTACCTCTTAGTAATTTTAAGTTAGCATCTGTGTTAGGATCCGAAA ATCCTAACCTTAAAATAAATTAAATCTAATATAATTAATCCTAACAATCTGTCTATTTCAATTTTGAAATGTTGCCAGTT ACTAATTATGTGCTTTTCCTTTCTCGTTTGTTTTGTTTTTTCCCTCACCCCTGGTATGACAGTCTCTTCTAGACCTTGCT TTGCGTACTACAGCAGCTGCAGCAGATCCTTTTCATGAAGGCTTGACCTGTGTGGTGGCAAGTAACAAATTCATCTTGTT AGAAACTCTTTTGGGGCTGTAAATATTAGTATTCACACATTACAAATTGTATACTTTCAGGAAAGGTCTTCTTTGCTTAA AAGGTTGGGCACCTTTAATGATCTTGAAGTTAGTCAGCGAAATTCTGGCAACAATGATCTTCTTGAAGAACCTGTTAGCA TCACTTGCCTTGAAACATTTTCACTAAGTTATAAGGTTGTTTTCTACTCTTTAAGTTTCTGAGAGTGTTTAAATTTTTTT TAGTTGTATCATTTTGATGATTCTGTTTTTGGTTGGTTTCAGGTGCACTGGCCATTGTCTATAGTATTATCACGTAAAGC CCTTACAAAGTACCAGTTAATTTTTCGATTTCTCTTCCACTGTAAACATGTTGACCGTCAGCTGTGTGGAGCATGGCAAG TACATCAAGTATGGCTCTGAGTGCTTTTACATCACTTGGTCTGTTATATTTATCTCTTTTTCACCTCCATTTTGCTCCCA TATTACAGGGAGTTCGTGCTCTCAATACACATGGAACTGCTATCTCCAGATCATCTCTTCTTTGTCGTAGTATGCTTAAA TTTATCAATAGCCTTTTGCACTATTTAACATTTGAGGCAAGTTTTACTTCTCTTTATATGTGTGTGCGTGTGTGTATCTG CACTCGCTCTTTCTAAGATGACATTTATTGCAACCAGATTTTTGTATGAGTGTGTTATCTGTGTTCGCTCTTCTTAAGTG CACATCATTGAGACCAAATTTTTGTATGTGCTCTAAAATTTTATTTTTAAGACCAAAGTTTGTAGAATCAGATACAAGTG TCACTTTTGCTTCTTTCTTTTTCTTAAATGTTCCTTAACTGAGCAGTAAGGTCATTGGTTTATGACTATAGCTTATTTTA TAGGTTATTGAACCCAACTGGCATCTGATGTACAACAGACTTCAGTCAGCAAATAGCATAGATGAGGCAAGTTTTTGTTA TTTTGCATTTCAAAACTGATGTTTAGTACCACTTACATACTTGCATGTCTTTCTGTTCCTGGGTGAATTTTTCTCTTTTA GGAAGCTTGAGAAAGTCTGACATTCTCTATCTGAAACAGGTTATACAACATCATGATTTTTTCCTTGATAAATGTTTGAG AGAATGTTTACTTCTTTTACCTGAGCTGCTGAAGGTTAGTTTCACTCGGTTTTCTTTTTATAAAAGGTTCTCTTTGTTTT TTACTCGAATGGTTATGCAGTTATTATTTTGGGTACTAAAAAGTATCACTTGTCAAGAATCCTGAATCAGATATAGGTGT GAAAGAGATATCTTGTAACAGGAGGTGCCTAATAGAAACTCGATAAGATCATACATTAAACACAGAAAACAGTAGTATGT TATTACTCTCATGTAGGCTTACCAATATCAAGGTTATGACTGGGATCTTTAGAATACTCCTTGTGAAACAGCAGGGATAG GTCAATTACATTAGTAGAAAAGTCTAGTTTAGTTGAAAATATAACATCTGAGTGCCTACATTTCCTAAATCTTATCAATT GCAGAAGGTGGAGAGGCTTAAGTCCATGTGCCTTCAGTATGCAGCAGCAACTCAGTGGCTTATATCATCATCTATTGTAT TACATAGCCCAGAGGAACCTAATGATGATTCAGTTAGATCCAAGCAACGGAAATCAGGTCAGATCCTGAAGTCAACCACC AACAATGCGGCAGTCACTGATTCTGTTCTGTAAGTCCAAAAACAATAAATTTTTATTTATTTTATACTCATCATTTCACG TCTCATGAGCATTCTGACCAAAATAAATCAATGCAGCAAATTTGAGAAGGAATTTAATGCTGAACTTCAGAGTCTTGGAT CAGTCTTGAGTAGTAGCTCCCATGCAGAGCCGTATCTGGCCCATCTTGCACAATGGATTCTTGGTGTGAAACATGAACGT AATGGTTTGTGATTCGTTTTAACTGGATTATCTGTAATATACTTAATCAATCGTGTGTATGTTACTGTAATTTTCGAGTG TGGGTGTTAACTCTGCATTTTTGTAATCCCCGAGCACTTTGTGGATTGAATTCAAATATACTTGGGTTCTTTTTATTGAA AATGTTTAGGTTTCAGTTTCACTATTAATTTTAATGCATAACAATGCGA 

CDS sequence (LotjaGi1g1v0290100.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTTGCGGTTGAAGGACGATATATTTTAATCAAAACGGTTCGCGGAAAGAAGGATGATGTTACTTTCCTGGTTGACCC TTCCATGGATTTGGCACTACAGGAGTTGGCAAAGCGAATATTTCCTCTTTGTAGGAGCTATCTGTTGATCAACCAATTTG TGGAGTCAAGGTCTCAGTTCCAGAATGGTCTAGTTAATCATGCCTTTTCTGCTGCACTGAGGGCACTTCTTATCGATTAC CAGGCCATGGTGGCACAGCTTGAGCACCAATTTCGTCTTGGGAGACTTTCCCTTCAAGGATTATGGTTCTACTGTCAGCC GATGATGAGGTCAATGCAGGCATTATCTACTGTCATACAGATGGCTTCAGTCAACAATTTTTCTGGTTCTGCTGTGCTTA ACTTACTGCAGAGTCAGGCAAAGGCTATGGCGGGAGATAATGCTGTCAGGTTATTGCTAGACAAGATGGCACAATGTGCA AGTAGTGCTTACATGAGCATATTAGAAAGATGGGTCTATGAAGGAGTGATAGATGATCCCTATGGTGAATTTTCATCGCA GAGGACAATCTCCAAGAGAAAAGATAGTCTCACCCAAGATTATGAAGCTAAGTATTGGCGACAACGTTACAGCCTCAAAG ATGGAATTCCTAGTTTCCTTGCAAATATTGCGGGGACAATTTTGACCACGGGGAAATATCTAAATGTCATGAGAGAGTGT GGGCATAATGTTCAGGTCCCTCCATCAGAAAATTCAAAATTAATGAGCTTGGGTTCAAATCATCATTATCTTGAATGTAT TAAGGCTGCTTATAACTTTGCAAGTGGTGAACTCTTGAATCTCATCAAGGAAAAGTATGATCTAACCGGAAGGCTGCGGT CTATAAAACACTACCTTCTTCTTGATCAGGGTGATTTCTTAGTACATTTTATGGATATTGCTCGAGACGAGCTAGCTAAA AAGCCTGATGAAGTCTCAGTTGAGAAGCTGCAGTCTCTTCTAGACCTTGCTTTGCGTACTACAGCAGCTGCAGCAGATCC TTTTCATGAAGGCTTGACCTGTGTGGTGGAAAGGTCTTCTTTGCTTAAAAGGTTGGGCACCTTTAATGATCTTGAAGTTA GTCAGCGAAATTCTGGCAACAATGATCTTCTTGAAGAACCTGTTAGCATCACTTGCCTTGAAACATTTTCACTAAGTTAT AAGGTGCACTGGCCATTGTCTATAGTATTATCACGTAAAGCCCTTACAAAGTACCAGTTAATTTTTCGATTTCTCTTCCA CTGTAAACATGTTGACCGTCAGCTGTGTGGAGCATGGCAAGTACATCAAGGAGTTCGTGCTCTCAATACACATGGAACTG CTATCTCCAGATCATCTCTTCTTTGTCGTAGTATGCTTAAATTTATCAATAGCCTTTTGCACTATTTAACATTTGAGGTT ATTGAACCCAACTGGCATCTGATGTACAACAGACTTCAGTCAGCAAATAGCATAGATGAGGTTATACAACATCATGATTT TTTCCTTGATAAATGTTTGAGAGAATGTTTACTTCTTTTACCTGAGCTGCTGAAGAAGGTGGAGAGGCTTAAGTCCATGT GCCTTCAGTATGCAGCAGCAACTCAGTGGCTTATATCATCATCTATTGTATTACATAGCCCAGAGGAACCTAATGATGAT TCAGTTAGATCCAAGCAACGGAAATCAGGTCAGATCCTGAAGTCAACCACCAACAATGCGGCAGTCACTGATTCTGTTCT CAAATTTGAGAAGGAATTTAATGCTGAACTTCAGAGTCTTGGATCAGTCTTGAGTAGTAGCTCCCATGCAGAGCCGTATC TGGCCCATCTTGCACAATGGATTCTTGGTGTGAAACATGAACGTAATGGTTTGTGA 

Protein sequence (LotjaGi1g1v0290100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVAVEGRYILIKTVRGKKDDVTFLVDPSMDLALQELAKRIFPLCRSYLLINQFVESRSQFQNGLVNHAFSAALRALLIDY QAMVAQLEHQFRLGRLSLQGLWFYCQPMMRSMQALSTVIQMASVNNFSGSAVLNLLQSQAKAMAGDNAVRLLLDKMAQCA SSAYMSILERWVYEGVIDDPYGEFSSQRTISKRKDSLTQDYEAKYWRQRYSLKDGIPSFLANIAGTILTTGKYLNVMREC GHNVQVPPSENSKLMSLGSNHHYLECIKAAYNFASGELLNLIKEKYDLTGRLRSIKHYLLLDQGDFLVHFMDIARDELAK KPDEVSVEKLQSLLDLALRTTAAAADPFHEGLTCVVERSSLLKRLGTFNDLEVSQRNSGNNDLLEEPVSITCLETFSLSY KVHWPLSIVLSRKALTKYQLIFRFLFHCKHVDRQLCGAWQVHQGVRALNTHGTAISRSSLLCRSMLKFINSLLHYLTFEV IEPNWHLMYNRLQSANSIDEVIQHHDFFLDKCLRECLLLLPELLKKVERLKSMCLQYAAATQWLISSSIVLHSPEEPNDD SVRSKQRKSGQILKSTTNNAAVTDSVLKFEKEFNAELQSLGSVLSSSSHAEPYLAHLAQWILGVKHERNGL 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 628 628 1.6E-248
PANTHER 1 628 628 1.6E-248
Pfam 4 285 282 1.9E-61
Pfam 288 618 331 1.8E-66
Gene3D 288 625 338 1.4E-75

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Microtubule cytoskeleton organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins.
Cellular component Spindle pole Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules.
Cellular component Microtubule organizing center An intracellular structure that can catalyze gamma-tubulin-dependent microtubule nucleation and that can anchor microtubules by interacting with their minus ends, plus ends or sides.
Biological process Microtubule nucleation The process in which tubulin alpha-beta heterodimers begin aggregation to form an oligomeric tubulin structure (a microtubule seed). Microtubule nucleation is the initiating step in the formation of a microtubule in the absence of any existing microtubules ('de novo' microtubule formation).
Molecular function Gamma-tubulin binding Interacting selectively and non-covalently with the microtubule constituent protein gamma-tubulin.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0290100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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