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LotjaGi1g1v0290100.3

Overview

Field Value
Gene ID LotjaGi1g1v0290100
Transcript ID LotjaGi1g1v0290100.3
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Gamma-tubulin complex component; TAIR: AT5G17410.1 Spc97 / Spc98 family of spindle pole body (SBP) component; Swiss-Prot: sp|Q9C5H9|GACP2_ARATH Gamma-tubulin complex component 2; TrEMBL-Plants: tr|A0A0R0FN05|A0A0R0FN05_SOYBN Gamma-tubulin complex component; Found in the gene: LotjaGi1g1v0290100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:70393241..70398964) extracted from Lotus japonicus Gifu genome v1.2.

ATGGTGGCACAGCTTGAGCACCAATTTCGTCTTGGGAGACTTTCCCTTCAAGGATTATGGTTCTACTGTCAGGTGTGGAG TTGTCTACTTGTCTTGACCTAAAAGAAAATGTTTGTCAATAGTTGCTGATTGTACTTTCAATTGTGTGTTTCAGCCGATG ATGAGGTCAATGCAGGCATTATCTACTGTCATACAGATGGCTTCAGTCAACAATTTTTCTGGTTCTGCTGTGCTTAACTT ACTGCAGAGTCAGGCAAGGAAACTTTCTTGCATTGTTACCGTTCTCTATATATGTCCAAAAACTTCCCTTTAGTGTCAAG AATTAGTTTCTTAAGCAATTTATTCTCTCCTCTGTGGCTTCTATTGTAACTAGGCAAAGGCTATGGCGGGAGATAATGCT GTCAGGTTATTGCTAGACAAGATGGCACAATGTGCAAGTAGTGCTTACATGAGCATATTAGAAAGGTTGCTCTTTTTCTC CTTCCGACTAATAAATATGTAGATTTTGTTCTTTTCCAGCTTCCCTCTCCTTTGAGTTTTTGGGTATGTTTGGGTGTAAG GATTAGGGAATGGAAGGAGTTAAAGGAAAAAATGGAAGAGAAAGGGAAGGAAAAGAATGAGGGGGGTTAAATAATTATTT TGCTTCCTTTTGTTTGGATGTTTAGAAAATGTTTGTAAAAGTGAATATAGTTTGGTTTTGCTGGATCACTTGAAAACCCT TCATTTACTTTCCATTCTTTCGTGAAACTCCTAGTCTCCTAAGCATAAGGAAGGTCTGACCTTCCTTTTCCCTGCTTTCT TTTTCCACTTCCTTCATCTAATCAAAACTCTTAATGCTCACACATAGCCTTAGCCATGCTAACTTATCCAATCTTTTCCC TAACCCCTCACCAGGTCTTACGACCTCTCATATAAAAAAATAAACAGTTAATCCTACTTCCTTTATCTGATGACTAATGT GTAGACAAGCAATATACCAAATCAGATTGATTTTTGTATTTTTGTCATTTACCACAAATAAACTTCCACTGTTGTGCGTG CGTGTCTTTCGTCATTGCATTTCTCAGTTGTTAGTCATATTTGTTCTATTGGTCTATTACACTCACGTATTACTATGATT TAGACTTTTCTTTAATATAGATTTGTTGATAAATGGACATCAGTTAGCACTTGGCAAGGTTGCTTTAAAGAAGACCTTTG ATGCAATATAAAAATGGTTTGCTCTTTTGGTGGCACAAAATTAACCTTGTCTTGTGTGCTGTTTTTATCATGCGTTGACT CTAATGAGCACTCTGCTTTCTTGTCCATTTGGGAAATTACAATATTGAAGATGGGTCTATGAAGGAGTGATAGATGATCC CTATGGTGAATTTTCATCGCAGAGGACAATCTCCAAGAGAAAAATTCTAAAACCACTTATAGCAGCCCAACATTGATAGC AAAACTTGTTTTTCCATATGGTCTCAGTTTCAAATTCTCTGTAGGATAGTCTCACCCAAGATTATGAAGCTAAGTATTGG CGACAACGTTACAGCCTCAAAGATGGAATTCCTAGTTTCCTTGCAAATATTGCGGGGACAATTTTGACCACGGGGAAATA TCTAAATGTCATGAGAGAGTGTGGGCATAATGTTCAGGTTTTGTTACTGTTATATTTTGTATATAGACTACTAAATTTAT CTTCTCAGTCCTTCACATTGAAGGGTGCTTGAGAATATTTTATTGTTTTACAAGTGGTTGCTTCACTAAACGTAGTTACT TGTTACTTTAGGTCCCTCCATCAGAAAATTCAAAATTAATGAGCTTGGGTTCAAATCATCATTATCTTGAATGTATTAAG GCTGCTTATAACTTTGCAAGTGGTGAACTCTTGAATCTCATCAAGGAAAAGGTGAGGTTGAATACTTATTAGGCAATAAA AATCTATGATTACATTCTAATGCTCCTGCAATTGTTATTGTTAAAGTCCAAGTTCTAATGATGAAATATGTTTCTATGTT TAGTATGATCTAACCGGAAGGCTGCGGTCTATAAAACACTACCTTCTTCTTGATCAGGTATGATCATGGTCTTCTTACAA TGTTCAATTTTAGACAATAACTAGTAATGCTGGAAAGCTAAAGCAGTATAAAGGATCAAAATTTAAGGGCGTGTTTGATT TGTGCTTTTATATTTAGCTGATATGTTTTCACTAATAATTACAAAAATGTCAATTTGTTTTCACTTTGTTTCCTGTTGCA GAATTTGCAAAGGAAATGGGACAACAAACATGAAATGTAGTGAAAGTTACGTGACATTTTTGTGATTTATATAAATATAT CAATTGAAAATGAAAGTAAAAAACAAACCAAACGCTCCACAAGCATAATTGGATTATTCCTCTCATGCTTTTCATGTGAC GAGTTCCGGAATGTTAGATGCGATTTCTTACTTGTGTTTTGAAGGCCTATGATAGTTTTGAATGGAAGAAAACAATAAAC AGATTAAAATGCCGATTAGGGGTAGGAATGAGCCAAAGAGCTTGTTGGGGCCTATGGCCTGGACTCATTAGGTCTATGTC AGGTTTGTTTACTCATTAAACTAGGTCAAGAATGTTTTAAAAGCCTATTTAGCTAAAAGGATTATACAAGCTATCCAAAA TTCCGGCTTAATTAAGTAGATATAAGTAATATAATACTATTTTTTATCATTGTATTAGATTATTTTTATAATATTTAAAA TTATATACCTGTTGATCTATTAAAAAATGTAAGTCTGTTGGCTTAAGAGAGACTTGAGCCCATAAGTTTATTTAGAGATA GACTTGTGATCTATTTAACAGCCTTATTACAAAATATGTTTTAAAATAGACTTTAATTTTAATCAATATGGGTCTCAATA GCTTTGAGCTCAAGAAATAACAGATTCAGAGAACATTTAAAAACCAGGTATTGCGATCTACGTGTCGTTTAGTGGCATGT GATGCTCTCTCCCTGTCCTTTGTTCTCCGAGCTCTTGCTAAAAGAACAATTGAACAAGCATTTTGGAAAGGTGGTCTAAC TGAGAGTTAGCTGAAGTTGTGGATCTGTATTATGTGCAAATAGTTGTATGCTGAAAAAATAAACTTTTGCAGAATGGTAG TCTTTGCATTGAACATTATGAGTTTCAGTTTTTCATGGTTTCTTTCGTTGGAATATATATAGGGCTGATCAGGTGAGTAC AGAGAAGGGACCTTGTAAGAAAATATTCAGCTGGTTTGAATTTCACATACCTAGGCCTTACATTGTATGACATATTATAT AGTGATTTCTTCTTTCTCTTGGAAGTCAATTCTCAATGTCACAATTATAATGTACACTCACTTTTTCTTGCCTGATTTTT TATAATGTTCATGCTCACACAGGGTGATTTCTTAGTACATTTTATGGATATTGCTCGAGACGAGCTAGCTAAAAAGCCTG ATGAAGTCTCAGTTGAGAAGCTGCAGGTATTGTTATAGGATGTTCTTTACTTTACCATACAACTTTTTACCTCTTAGTAA TTTTAAGTTAGCATCTGTGTTAGGATCCGAAAATCCTAACCTTAAAATAAATTAAATCTAATATAATTAATCCTAACAAT CTGTCTATTTCAATTTTGAAATGTTGCCAGTTACTAATTATGTGCTTTTCCTTTCTCGTTTGTTTTGTTTTTTCCCTCAC CCCTGGTATGACAGTCTCTTCTAGACCTTGCTTTGCGTACTACAGCAGCTGCAGCAGATCCTTTTCATGAAGGCTTGACC TGTGTGGTGGCAAGTAACAAATTCATCTTGTTAGAAACTCTTTTGGGGCTGTAAATATTAGTATTCACACATTACAAATT GTATACTTTCAGGAAAGGTCTTCTTTGCTTAAAAGGTTGGGCACCTTTAATGATCTTGAAGTTAGTCAGCGAAATTCTGG CAACAATGATCTTCTTGAAGAACCTGTTAGCATCACTTGCCTTGAAACATTTTCACTAAGTTATAAGGTTGTTTTCTACT CTTTAAGTTTCTGAGAGTGTTTAAATTTTTTTTAGTTGTATCATTTTGATGATTCTGTTTTTGGTTGGTTTCAGGTGCAC TGGCCATTGTCTATAGTATTATCACGTAAAGCCCTTACAAAGTACCAGTTAATTTTTCGATTTCTCTTCCACTGTAAACA TGTTGACCGTCAGCTGTGTGGAGCATGGCAAGTACATCAAGTATGGCTCTGAGTGCTTTTACATCACTTGGTCTGTTATA TTTATCTCTTTTTCACCTCCATTTTGCTCCCATATTACAGGGAGTTCGTGCTCTCAATACACATGGAACTGCTATCTCCA GATCATCTCTTCTTTGTCGTAGTATGCTTAAATTTATCAATAGCCTTTTGCACTATTTAACATTTGAGGCAAGTTTTACT TCTCTTTATATGTGTGTGCGTGTGTGTATCTGCACTCGCTCTTTCTAAGATGACATTTATTGCAACCAGATTTTTGTATG AGTGTGTTATCTGTGTTCGCTCTTCTTAAGTGCACATCATTGAGACCAAATTTTTGTATGTGCTCTAAAATTTTATTTTT AAGACCAAAGTTTGTAGAATCAGATACAAGTGTCACTTTTGCTTCTTTCTTTTTCTTAAATGTTCCTTAACTGAGCAGTA AGGTCATTGGTTTATGACTATAGCTTATTTTATAGGTTATTGAACCCAACTGGCATCTGATGTACAACAGACTTCAGTCA GCAAATAGCATAGATGAGGCAAGTTTTTGTTATTTTGCATTTCAAAACTGATGTTTAGTACCACTTACATACTTGCATGT CTTTCTGTTCCTGGGTGAATTTTTCTCTTTTAGGAAGCTTGAGAAAGTCTGACATTCTCTATCTGAAACAGGTTATACAA CATCATGATTTTTTCCTTGATAAATGTTTGAGAGAATGTTTACTTCTTTTACCTGAGCTGCTGAAGGTTAGTTTCACTCG GTTTTCTTTTTATAAAAGGTTCTCTTTGTTTTTTACTCGAATGGTTATGCAGTTATTATTTTGGGTACTAAAAAGTATCA CTTGTCAAGAATCCTGAATCAGATATAGGTGTGAAAGAGATATCTTGTAACAGGAGGTGCCTAATAGAAACTCGATAAGA TCATACATTAAACACAGAAAACAGTAGTATGTTATTACTCTCATGTAGGCTTACCAATATCAAGGTTATGACTGGGATCT TTAGAATACTCCTTGTGAAACAGCAGGGATAGGTCAATTACATTAGTAGAAAAGTCTAGTTTAGTTGAAAATATAACATC TGAGTGCCTACATTTCCTAAATCTTATCAATTGCAGAAGGTGGAGAGGCTTAAGTCCATGTGCCTTCAGTATGCAGCAGC AACTCAGTGGCTTATATCATCATCTATTGTATTACATAGCCCAGAGGAACCTAATGATGATTCAGTTAGATCCAAGCAAC GGAAATCAGGTCAGATCCTGAAGTCAACCACCAACAATGCGGCAGTCACTGATTCTGTTCTGTAAGTCCAAAAACAATAA ATTTTTATTTATTTTATACTCATCATTTCACGTCTCATGAGCATTCTGACCAAAATAAATCAATGCAGCAAATTTGAGAA GGAATTTAATGCTGAACTTCAGAGTCTTGGATCAGTCTTGAGTAGTAGCTCCCATGCAGAGCCGTATCTGGCCCATCTTG CACAATGGATTCTTGGTGTGAAACATGAACGTAATGGTTTGTGA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0290100.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTGGCACAGCTTGAGCACCAATTTCGTCTTGGGAGACTTTCCCTTCAAGGATTATGGTTCTACTGTCAGCCGATGAT GAGGTCAATGCAGGCATTATCTACTGTCATACAGATGGCTTCAGTCAACAATTTTTCTGGTTCTGCTGTGCTTAACTTAC TGCAGAGTCAGGCAAAGGCTATGGCGGGAGATAATGCTGTCAGGTTATTGCTAGACAAGATGGCACAATGTGCAAGTAGT GCTTACATGAGCATATTAGAAAGATGGGTCTATGAAGGAGTGATAGATGATCCCTATGGTGAATTTTCATCGCAGAGGAC AATCTCCAAGAGAAAAGATAGTCTCACCCAAGATTATGAAGCTAAGTATTGGCGACAACGTTACAGCCTCAAAGATGGAA TTCCTAGTTTCCTTGCAAATATTGCGGGGACAATTTTGACCACGGGGAAATATCTAAATGTCATGAGAGAGTGTGGGCAT AATGTTCAGGTCCCTCCATCAGAAAATTCAAAATTAATGAGCTTGGGTTCAAATCATCATTATCTTGAATGTATTAAGGC TGCTTATAACTTTGCAAGTGGTGAACTCTTGAATCTCATCAAGGAAAAGTATGATCTAACCGGAAGGCTGCGGTCTATAA AACACTACCTTCTTCTTGATCAGGGTGATTTCTTAGTACATTTTATGGATATTGCTCGAGACGAGCTAGCTAAAAAGCCT GATGAAGTCTCAGTTGAGAAGCTGCAGTCTCTTCTAGACCTTGCTTTGCGTACTACAGCAGCTGCAGCAGATCCTTTTCA TGAAGGCTTGACCTGTGTGGTGGAAAGGTCTTCTTTGCTTAAAAGGTTGGGCACCTTTAATGATCTTGAAGTTAGTCAGC GAAATTCTGGCAACAATGATCTTCTTGAAGAACCTGTTAGCATCACTTGCCTTGAAACATTTTCACTAAGTTATAAGGTG CACTGGCCATTGTCTATAGTATTATCACGTAAAGCCCTTACAAAGTACCAGTTAATTTTTCGATTTCTCTTCCACTGTAA ACATGTTGACCGTCAGCTGTGTGGAGCATGGCAAGTACATCAAGGAGTTCGTGCTCTCAATACACATGGAACTGCTATCT CCAGATCATCTCTTCTTTGTCGTAGTATGCTTAAATTTATCAATAGCCTTTTGCACTATTTAACATTTGAGGTTATTGAA CCCAACTGGCATCTGATGTACAACAGACTTCAGTCAGCAAATAGCATAGATGAGGTTATACAACATCATGATTTTTTCCT TGATAAATGTTTGAGAGAATGTTTACTTCTTTTACCTGAGCTGCTGAAGAAGGTGGAGAGGCTTAAGTCCATGTGCCTTC AGTATGCAGCAGCAACTCAGTGGCTTATATCATCATCTATTGTATTACATAGCCCAGAGGAACCTAATGATGATTCAGTT AGATCCAAGCAACGGAAATCAGGTCAGATCCTGAAGTCAACCACCAACAATGCGGCAGTCACTGATTCTGTTCTCAAATT TGAGAAGGAATTTAATGCTGAACTTCAGAGTCTTGGATCAGTCTTGAGTAGTAGCTCCCATGCAGAGCCGTATCTGGCCC ATCTTGCACAATGGATTCTTGGTGTGAAACATGAACGTAATGGTTTGTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0290100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVAQLEHQFRLGRLSLQGLWFYCQPMMRSMQALSTVIQMASVNNFSGSAVLNLLQSQAKAMAGDNAVRLLLDKMAQCASS AYMSILERWVYEGVIDDPYGEFSSQRTISKRKDSLTQDYEAKYWRQRYSLKDGIPSFLANIAGTILTTGKYLNVMRECGH NVQVPPSENSKLMSLGSNHHYLECIKAAYNFASGELLNLIKEKYDLTGRLRSIKHYLLLDQGDFLVHFMDIARDELAKKP DEVSVEKLQSLLDLALRTTAAAADPFHEGLTCVVERSSLLKRLGTFNDLEVSQRNSGNNDLLEEPVSITCLETFSLSYKV HWPLSIVLSRKALTKYQLIFRFLFHCKHVDRQLCGAWQVHQGVRALNTHGTAISRSSLLCRSMLKFINSLLHYLTFEVIE PNWHLMYNRLQSANSIDEVIQHHDFFLDKCLRECLLLLPELLKKVERLKSMCLQYAAATQWLISSSIVLHSPEEPNDDSV RSKQRKSGQILKSTTNNAAVTDSVLKFEKEFNAELQSLGSVLSSSSHAEPYLAHLAQWILGVKHERNGL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR19302:SF13
1 546 546 5.2E-217 –
PANTHER
PTHR19302
1 546 546 5.2E-217
IPR007259
Pfam
PF17681
2 203 202 1.2E-44
IPR041470
Pfam
PF04130
206 536 331 1.2E-66
IPR040457
Gene3D
G3DSA:1.20.120.1900
206 543 338 8.8E-76
IPR042241

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000226
Biological process Microtubule cytoskeleton organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins.
Subterm of
GO:0000922
Cellular component Spindle pole Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules.
Subterm of
Part of
GO:0005815
Cellular component Microtubule organizing center An intracellular structure that can catalyze gamma-tubulin-dependent microtubule nucleation and that can anchor microtubules by interacting with their minus ends, plus ends or sides.
Subterm of
Part of
GO:0007020
Biological process Microtubule nucleation The process in which tubulin alpha-beta heterodimers begin aggregation to form an oligomeric tubulin structure (a microtubule seed). Microtubule nucleation is the initiating step in the formation of a microtubule in the absence of any existing microtubules ('de novo' microtubule formation).
Subterm of
Part of
GO:0043015
Molecular function Gamma-tubulin binding Interacting selectively and non-covalently with the microtubule constituent protein gamma-tubulin.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0290100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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