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LotjaGi1g1v0290100.4

Overview

Field Value
Gene ID LotjaGi1g1v0290100
Transcript ID LotjaGi1g1v0290100.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Gamma-tubulin complex component; TAIR: AT5G17410.2 Spc97 / Spc98 family of spindle pole body (SBP) component; Swiss-Prot: sp|Q9C5H9|GACP2_ARATH Gamma-tubulin complex component 2; TrEMBL-Plants: tr|A0A0R0FN05|A0A0R0FN05_SOYBN Gamma-tubulin complex component; Found in the gene: LotjaGi1g1v0290100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:70393241..70400381) extracted from Lotus japonicus Gifu genome v1.2.

ATGGTTGCGGTTGAAGGACGATATATTTTAATCAAAACGGTTCGCGGAAAGAAGGATGATGTTACTTTCCTGGTTGACCC TTCCATGGATTTGGCACTACAGGTGAGAGTTAGCGCGATTTCTCTACCGTATTTTGAGCAGTAATTAAAGCATTAGAGGT GCTAAACATCCGCATTTTGCTTCATGGCGATAGCGGATAGTTATGATTGGATATTGGAGAAAGTTGCTAAACTGGAAATG GAAATGGAAATGCTTTCTACACAATTTATAGGTTATTCGATATGTACAGTATCCTAACTTAATGCTCCCCATCATGGTGA AAGGCTCATTAGGTTCATCTAGATTTTTCTTTCCATGTTTGTAAAAGCTCTTATTTCAACTGTGTAACTTTTCTAATGGA ATTGAAGCTTATAAGTCTAGCTTAGAATTCAAATAATGCAATGTTTTTTTCCTTAAATATTTTGCCTGATTTCGTCGGTG ACTTAAATAAAGGTAATTGCTTTACACAATTTTGTTTTATAGTTTTGGACTTTGTTTTAAATTGTGGTCTGCTACCATAC GTGTTTGGAGGTTTATGCAACAGCAACGAAGACACAAGTGAGAAGCTACTGGGGAATGTAAAACTGGCTTATGCTATGTT TGTATAACTTAGATAATGGACTGTATGATGAGATACCATGATAGAGTGCCATTAATTGTGCCTGAATTAGTTTTTATGTT GCAGGAGTTGGCAAAGCGAATATTTCCTCTTTGTAGGAGCTATCTGTTGATCAACCAATTTGTGGAGTCAAGGTCTCAGT TCCAGAATGGTCTAGTTAATCATGCCTTTTCTGCTGCACTGAGGGCACTTCTTATCGTATGTTTTCCTGAACAGTGAGTC AGTTGGTCAATTTACACACACTGGTGGAACAATACTGGGTTATGTTTTAATGCTTCTTATAGTATACTGTCTGTTTTAGT AAATTTAATATGTTACTAGGTCCAAGTATTTGCATCTGAAATTTAGATTGAGGTGTTGATAGGCTACAACTAATCATTTA AATTTGAACGCCATCAATAAACAGAGGACTGCAAAACAATTGAAATGAATGTTAGAGTTATACCTGACCAAAGCAGTTAG CAAATATAGAGACAGTCTATTTCTCTTCGTAGAATAAAAATTAGGAAGATGAAAAATATTAAAAGGCTAGGACTCTAGGA GGCGATAGTCAAAATTAAAAGGTGGGATGAGTAGGCCAGCAGCAACCAGATGACAGTTATAAGAGACAAAAACCAGTACT ATAGCATAAAGTAACCAAATTGATGTTCACCCTCTGTTGCAGTTCTTTATATATCATACCTTTCGATTACAATATTCAAT TTGAATAAGAACCTACTTTTTCTATTATGGGATTATCTTTACCAGGATTACCAGGCCATGGTGGCACAGCTTGAGCACCA ATTTCGTCTTGGGAGACTTTCCCTTCAAGGATTATGGTTCTACTGTCAGGTGTGGAGTTGTCTACTTGTCTTGACCTAAA AGAAAATGTTTGTCAATAGTTGCTGATTGTACTTTCAATTGTGTGTTTCAGCCGATGATGAGGTCAATGCAGGCATTATC TACTGTCATACAGATGGCTTCAGTCAACAATTTTTCTGGTTCTGCTGTGCTTAACTTACTGCAGAGTCAGGCAAGGAAAC TTTCTTGCATTGTTACCGTTCTCTATATATGTCCAAAAACTTCCCTTTAGTGTCAAGAATTAGTTTCTTAAGCAATTTAT TCTCTCCTCTGTGGCTTCTATTGTAACTAGGCAAAGGCTATGGCGGGAGATAATGCTGTCAGGTTATTGCTAGACAAGAT GGCACAATGTGCAAGTAGTGCTTACATGAGCATATTAGAAAGGTTGCTCTTTTTCTCCTTCCGACTAATAAATATGTAGA TTTTGTTCTTTTCCAGCTTCCCTCTCCTTTGAGTTTTTGGGTATGTTTGGGTGTAAGGATTAGGGAATGGAAGGAGTTAA AGGAAAAAATGGAAGAGAAAGGGAAGGAAAAGAATGAGGGGGGTTAAATAATTATTTTGCTTCCTTTTGTTTGGATGTTT AGAAAATGTTTGTAAAAGTGAATATAGTTTGGTTTTGCTGGATCACTTGAAAACCCTTCATTTACTTTCCATTCTTTCGT GAAACTCCTAGTCTCCTAAGCATAAGGAAGGTCTGACCTTCCTTTTCCCTGCTTTCTTTTTCCACTTCCTTCATCTAATC AAAACTCTTAATGCTCACACATAGCCTTAGCCATGCTAACTTATCCAATCTTTTCCCTAACCCCTCACCAGGTCTTACGA CCTCTCATATAAAAAAATAAACAGTTAATCCTACTTCCTTTATCTGATGACTAATGTGTAGACAAGCAATATACCAAATC AGATTGATTTTTGTATTTTTGTCATTTACCACAAATAAACTTCCACTGTTGTGCGTGCGTGTCTTTCGTCATTGCATTTC TCAGTTGTTAGTCATATTTGTTCTATTGGTCTATTACACTCACGTATTACTATGATTTAGACTTTTCTTTAATATAGATT TGTTGATAAATGGACATCAGTTAGCACTTGGCAAGGTTGCTTTAAAGAAGACCTTTGATGCAATATAAAAATGGTTTGCT CTTTTGGTGGCACAAAATTAACCTTGTCTTGTGTGCTGTTTTTATCATGCGTTGACTCTAATGAGCACTCTGCTTTCTTG TCCATTTGGGAAATTACAATATTGAAGATGGGTCTATGAAGGAGTGATAGATGATCCCTATGGTGAATTTTCATCGCAGA GGACAATCTCCAAGAGAAAAATTCTAAAACCACTTATAGCAGCCCAACATTGATAGCAAAACTTGTTTTTCCATATGGTC TCAGTTTCAAATTCTCTGTAGGATAGTCTCACCCAAGATTATGAAGCTAAGTATTGGCGACAACGTTACAGCCTCAAAGA TGGAATTCCTAGTTTCCTTGCAAATATTGCGGGGACAATTTTGACCACGGGGAAATATCTAAATGTCATGAGAGAGTGTG GGCATAATGTTCAGGTTTTGTTACTGTTATATTTTGTATATAGACTACTAAATTTATCTTCTCAGTCCTTCACATTGAAG GGTGCTTGAGAATATTTTATTGTTTTACAAGTGGTTGCTTCACTAAACGTAGTTACTTGTTACTTTAGGTCCCTCCATCA GAAAATTCAAAATTAATGAGCTTGGGTTCAAATCATCATTATCTTGAATGTATTAAGGCTGCTTATAACTTTGCAAGTGG TGAACTCTTGAATCTCATCAAGGAAAAGGTGAGGTTGAATACTTATTAGGCAATAAAAATCTATGATTACATTCTAATGC TCCTGCAATTGTTATTGTTAAAGTCCAAGTTCTAATGATGAAATATGTTTCTATGTTTAGTATGATCTAACCGGAAGGCT GCGGTCTATAAAACACTACCTTCTTCTTGATCAGGTATGATCATGGTCTTCTTACAATGTTCAATTTTAGACAATAACTA GTAATGCTGGAAAGCTAAAGCAGTATAAAGGATCAAAATTTAAGGGCGTGTTTGATTTGTGCTTTTATATTTAGCTGATA TGTTTTCACTAATAATTACAAAAATGTCAATTTGTTTTCACTTTGTTTCCTGTTGCAGAATTTGCAAAGGAAATGGGACA ACAAACATGAAATGTAGTGAAAGTTACGTGACATTTTTGTGATTTATATAAATATATCAATTGAAAATGAAAGTAAAAAA CAAACCAAACGCTCCACAAGCATAATTGGATTATTCCTCTCATGCTTTTCATGTGACGAGTTCCGGAATGTTAGATGCGA TTTCTTACTTGTGTTTTGAAGGCCTATGATAGTTTTGAATGGAAGAAAACAATAAACAGATTAAAATGCCGATTAGGGGT AGGAATGAGCCAAAGAGCTTGTTGGGGCCTATGGCCTGGACTCATTAGGTCTATGTCAGGTTTGTTTACTCATTAAACTA GGTCAAGAATGTTTTAAAAGCCTATTTAGCTAAAAGGATTATACAAGCTATCCAAAATTCCGGCTTAATTAAGTAGATAT AAGTAATATAATACTATTTTTTATCATTGTATTAGATTATTTTTATAATATTTAAAATTATATACCTGTTGATCTATTAA AAAATGTAAGTCTGTTGGCTTAAGAGAGACTTGAGCCCATAAGTTTATTTAGAGATAGACTTGTGATCTATTTAACAGCC TTATTACAAAATATGTTTTAAAATAGACTTTAATTTTAATCAATATGGGTCTCAATAGCTTTGAGCTCAAGAAATAACAG ATTCAGAGAACATTTAAAAACCAGGTATTGCGATCTACGTGTCGTTTAGTGGCATGTGATGCTCTCTCCCTGTCCTTTGT TCTCCGAGCTCTTGCTAAAAGAACAATTGAACAAGCATTTTGGAAAGGTGGTCTAACTGAGAGTTAGCTGAAGTTGTGGA TCTGTATTATGTGCAAATAGTTGTATGCTGAAAAAATAAACTTTTGCAGAATGGTAGTCTTTGCATTGAACATTATGAGT TTCAGTTTTTCATGGTTTCTTTCGTTGGAATATATATAGGGCTGATCAGGTGAGTACAGAGAAGGGACCTTGTAAGAAAA TATTCAGCTGGTTTGAATTTCACATACCTAGGCCTTACATTGTATGACATATTATATAGTGATTTCTTCTTTCTCTTGGA AGTCAATTCTCAATGTCACAATTATAATGTACACTCACTTTTTCTTGCCTGATTTTTTATAATGTTCATGCTCACACAGG GTGATTTCTTAGTACATTTTATGGATATTGCTCGAGACGAGCTAGCTAAAAAGCCTGATGAAGTCTCAGTTGAGAAGCTG CAGGTATTGTTATAGGATGTTCTTTACTTTACCATACAACTTTTTACCTCTTAGTAATTTTAAGTTAGCATCTGTGTTAG GATCCGAAAATCCTAACCTTAAAATAAATTAAATCTAATATAATTAATCCTAACAATCTGTCTATTTCAATTTTGAAATG TTGCCAGTTACTAATTATGTGCTTTTCCTTTCTCGTTTGTTTTGTTTTTTCCCTCACCCCTGGTATGACAGTCTCTTCTA GACCTTGCTTTGCGTACTACAGCAGCTGCAGCAGATCCTTTTCATGAAGGCTTGACCTGTGTGGTGGCAAGTAACAAATT CATCTTGTTAGAAACTCTTTTGGGGCTGTAAATATTAGTATTCACACATTACAAATTGTATACTTTCAGGAAAGGTCTTC TTTGCTTAAAAGGTTGGGCACCTTTAATGATCTTGAAGTTAGTCAGCGAAATTCTGGCAACAATGATCTTCTTGAAGAAC CTGTTAGCATCACTTGCCTTGAAACATTTTCACTAAGTTATAAGGTTGTTTTCTACTCTTTAAGTTTCTGAGAGTGTTTA AATTTTTTTTAGTTGTATCATTTTGATGATTCTGTTTTTGGTTGGTTTCAGGTGCACTGGCCATTGTCTATAGTATTATC ACGTAAAGCCCTTACAAAGTACCAGTTAATTTTTCGATTTCTCTTCCACTGTAAACATGTTGACCGTCAGCTGTGTGGAG CATGGCAAGTACATCAAGTATGGCTCTGAGTGCTTTTACATCACTTGGTCTGTTATATTTATCTCTTTTTCACCTCCATT TTGCTCCCATATTACAGGGAGTTCGTGCTCTCAATACACATGGAACTGCTATCTCCAGATCATCTCTTCTTTGTCGTAGT ATGCTTAAATTTATCAATAGCCTTTTGCACTATTTAACATTTGAGGCAAGTTTTACTTCTCTTTATATGTGTGTGCGTGT GTGTATCTGCACTCGCTCTTTCTAAGATGACATTTATTGCAACCAGATTTTTGTATGAGTGTGTTATCTGTGTTCGCTCT TCTTAAGTGCACATCATTGAGACCAAATTTTTGTATGTGCTCTAAAATTTTATTTTTAAGACCAAAGTTTGTAGAATCAG ATACAAGTGTCACTTTTGCTTCTTTCTTTTTCTTAAATGTTCCTTAACTGAGCAGTAAGGTCATTGGTTTATGACTATAG CTTATTTTATAGGTTATTGAACCCAACTGGCATCTGATGTACAACAGACTTCAGTCAGCAAATAGCATAGATGAGGCAAG TTTTTGTTATTTTGCATTTCAAAACTGATGTTTAGTACCACTTACATACTTGCATGTCTTTCTGTTCCTGGGTGAATTTT TCTCTTTTAGGAAGCTTGAGAAAGTCTGACATTCTCTATCTGAAACAGGTTATACAACATCATGATTTTTTCCTTGATAA ATGTTTGAGAGAATGTTTACTTCTTTTACCTGAGCTGCTGAAGGTTAGTTTCACTCGGTTTTCTTTTTATAAAAGGTTCT CTTTGTTTTTTACTCGAATGGTTATGCAGTTATTATTTTGGGTACTAAAAAGTATCACTTGTCAAGAATCCTGAATCAGA TATAGGTGTGAAAGAGATATCTTGTAACAGGAGGTGCCTAATAGAAACTCGATAAGATCATACATTAAACACAGAAAACA GTAGTATGTTATTACTCTCATGTAGGCTTACCAATATCAAGGTTATGACTGGGATCTTTAGAATACTCCTTGTGAAACAG CAGGGATAGGTCAATTACATTAGTAGAAAAGTCTAGTTTAGTTGAAAATATAACATCTGAGTGCCTACATTTCCTAAATC TTATCAATTGCAGAAGGTGGAGAGGCTTAAGTCCATGTGCCTTCAGTATGCAGCAGCAACTCAGTGGCTTATATCATCAT CTATTGTATTACATAGCCCAGAGGAACCTAATGATGATTCAGTTAGATCCAAGCAACGGAAATCAGGTCAGATCCTGAAG TCAACCACCAACAATGCGGCAGTCACTGATTCTGTTCTGTAAGTCCAAAAACAATAAATTTTTATTTATTTTATACTCAT CATTTCACGTCTCATGAGCATTCTGACCAAAATAAATCAATGCAGCAAATTTGAGAAGGAATTTAATGCTGAACTTCAGA GTCTTGGATCAGTCTTGAGTAGTAGCTCCCATGCAGAGCCGTATCTGGCCCATCTTGCACAATGGATTCTTGGTGTGAAA CATGAACGTAATGGTTTGTGA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0290100.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTTGCGGTTGAAGGACGATATATTTTAATCAAAACGGTTCGCGGAAAGAAGGATGATGTTACTTTCCTGGTTGACCC TTCCATGGATTTGGCACTACAGGAGTTGGCAAAGCGAATATTTCCTCTTTGTAGGAGCTATCTGTTGATCAACCAATTTG TGGAGTCAAGGTCTCAGTTCCAGAATGGTCTAGTTAATCATGCCTTTTCTGCTGCACTGAGGGCACTTCTTATCGATTAC CAGGCCATGGTGGCACAGCTTGAGCACCAATTTCGTCTTGGGAGACTTTCCCTTCAAGGATTATGGTTCTACTGTCAGCC GATGATGAGGTCAATGCAGGCATTATCTACTGTCATACAGATGGCTTCAGTCAACAATTTTTCTGGTTCTGCTGTGCTTA ACTTACTGCAGAGTCAGGCAAAGGCTATGGCGGGAGATAATGCTGTCAGGTTATTGCTAGACAAGATGGCACAATGTGCA AGTAGTGCTTACATGAGCATATTAGAAAGATGGGTCTATGAAGGAGTGATAGATGATCCCTATGGTGAATTTTCATCGCA GAGGACAATCTCCAAGAGAAAAGATAGTCTCACCCAAGATTATGAAGCTAAGTATTGGCGACAACGTTACAGCCTCAAAG ATGGAATTCCTAGTTTCCTTGCAAATATTGCGGGGACAATTTTGACCACGGGGAAATATCTAAATGTCATGAGAGAGTGT GGGCATAATGTTCAGGTCCCTCCATCAGAAAATTCAAAATTAATGAGCTTGGGTTCAAATCATCATTATCTTGAATGTAT TAAGGCTGCTTATAACTTTGCAAGTGGTGAACTCTTGAATCTCATCAAGGAAAAGTATGATCTAACCGGAAGGCTGCGGT CTATAAAACACTACCTTCTTCTTGATCAGGGTGATTTCTTAGTACATTTTATGGATATTGCTCGAGACGAGCTAGCTAAA AAGCCTGATGAAGTCTCAGTTGAGAAGCTGCAGTCTCTTCTAGACCTTGCTTTGCGTACTACAGCAGCTGCAGCAGATCC TTTTCATGAAGGCTTGACCTGTGTGGTGGAAAGGTCTTCTTTGCTTAAAAGGTTGGGCACCTTTAATGATCTTGAAGTTA GTCAGCGAAATTCTGGCAACAATGATCTTCTTGAAGAACCTGTTAGCATCACTTGCCTTGAAACATTTTCACTAAGTTAT AAGGTGCACTGGCCATTGTCTATAGTATTATCACGTAAAGCCCTTACAAAGTACCAGTTAATTTTTCGATTTCTCTTCCA CTGTAAACATGTTGACCGTCAGCTGTGTGGAGCATGGCAAGTACATCAAGGAGTTCGTGCTCTCAATACACATGGAACTG CTATCTCCAGATCATCTCTTCTTTGTCGTAGTATGCTTAAATTTATCAATAGCCTTTTGCACTATTTAACATTTGAGGTT ATTGAACCCAACTGGCATCTGATGTACAACAGACTTCAGTCAGCAAATAGCATAGATGAGGTTATACAACATCATGATTT TTTCCTTGATAAATGTTTGAGAGAATGTTTACTTCTTTTACCTGAGCTGCTGAAGAAGGTGGAGAGGCTTAAGTCCATGT GCCTTCAGTATGCAGCAGCAACTCAGTGGCTTATATCATCATCTATTGTATTACATAGCCCAGAGGAACCTAATGATGAT TCAGTTAGATCCAAGCAACGGAAATCAGGTCAGATCCTGAAGTCAACCACCAACAATGCGGCAGTCACTGATTCTGTTCT CAAATTTGAGAAGGAATTTAATGCTGAACTTCAGAGTCTTGGATCAGTCTTGAGTAGTAGCTCCCATGCAGAGCCGTATC TGGCCCATCTTGCACAATGGATTCTTGGTGTGAAACATGAACGTAATGGTTTGTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0290100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVAVEGRYILIKTVRGKKDDVTFLVDPSMDLALQELAKRIFPLCRSYLLINQFVESRSQFQNGLVNHAFSAALRALLIDY QAMVAQLEHQFRLGRLSLQGLWFYCQPMMRSMQALSTVIQMASVNNFSGSAVLNLLQSQAKAMAGDNAVRLLLDKMAQCA SSAYMSILERWVYEGVIDDPYGEFSSQRTISKRKDSLTQDYEAKYWRQRYSLKDGIPSFLANIAGTILTTGKYLNVMREC GHNVQVPPSENSKLMSLGSNHHYLECIKAAYNFASGELLNLIKEKYDLTGRLRSIKHYLLLDQGDFLVHFMDIARDELAK KPDEVSVEKLQSLLDLALRTTAAAADPFHEGLTCVVERSSLLKRLGTFNDLEVSQRNSGNNDLLEEPVSITCLETFSLSY KVHWPLSIVLSRKALTKYQLIFRFLFHCKHVDRQLCGAWQVHQGVRALNTHGTAISRSSLLCRSMLKFINSLLHYLTFEV IEPNWHLMYNRLQSANSIDEVIQHHDFFLDKCLRECLLLLPELLKKVERLKSMCLQYAAATQWLISSSIVLHSPEEPNDD SVRSKQRKSGQILKSTTNNAAVTDSVLKFEKEFNAELQSLGSVLSSSSHAEPYLAHLAQWILGVKHERNGL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR19302:SF13
1 628 628 1.6E-248 –
PANTHER
PTHR19302
1 628 628 1.6E-248
IPR007259
Pfam
PF17681
4 285 282 1.9E-61
IPR041470
Pfam
PF04130
288 618 331 1.8E-66
IPR040457
Gene3D
G3DSA:1.20.120.1900
288 625 338 1.4E-75
IPR042241

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000226
Biological process Microtubule cytoskeleton organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins.
Subterm of
GO:0000922
Cellular component Spindle pole Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules.
Subterm of
Part of
GO:0005815
Cellular component Microtubule organizing center An intracellular structure that can catalyze gamma-tubulin-dependent microtubule nucleation and that can anchor microtubules by interacting with their minus ends, plus ends or sides.
Subterm of
Part of
GO:0007020
Biological process Microtubule nucleation The process in which tubulin alpha-beta heterodimers begin aggregation to form an oligomeric tubulin structure (a microtubule seed). Microtubule nucleation is the initiating step in the formation of a microtubule in the absence of any existing microtubules ('de novo' microtubule formation).
Subterm of
Part of
GO:0043015
Molecular function Gamma-tubulin binding Interacting selectively and non-covalently with the microtubule constituent protein gamma-tubulin.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0290100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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