Transcript — View — Lotus Base

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LotjaGi1g1v0290200.1

Overview

Field	Value
Gene ID	LotjaGi1g1v0290200
Transcript ID	LotjaGi1g1v0290200.1
Related isoforms 2	LotjaGi1g1v0290200.2 LotjaGi1g1v0290200.3
Lotus japonicus genome version	Gifu v1.2
Description	Dof zinc finger protein; TAIR: AT3G61850.4 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp\|Q43385\|DOF37_ARATH Dof zinc finger protein DOF3.7; TrEMBL-Plants: tr\|A0A0S3REK8\|A0A0S3REK8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0290200
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:70541033..70543692) extracted from Lotus japonicus Gifu genome v1.2.

CATGGAACCACTACCATATCCCTCTCAACTCTGGAAGCTTTACGCACTTGCTTTATATTCCCATCTTTGAAAAAAGTGGG TGTGTTTCTTTCTCTGAGGACTCGTAGTAGCTTTTCCTTTTTTCCATCCTTCTTAAATCCATGGACACAGCTCAGTGGGC ACAGGTACACACAGACACTTTTTTCTGTTTTTCTTTCCATATAATAATGAAAATCTCTTCTGGGGGTTGTGATTATCAAC CATATATAGCTCAGATCATTAATAAGTTTTGGGCTTTTGGAAAATTTATTTTGATCACTATTGTTAATTAATTAGTTCTG AGGAAAGTTTTCACTTTATCTCCAACTTTTCTCTGATGTTGTTTCAGTTCAGTAGTCTCCCACTAAATTCAATTTAAAGT GTACTGCACACCTTTCTTTTTCCACCATCTGATAAAGGACCCAAGAAAAAGTGACTAAAATTTGTTTGTTTCATGCTGCT GCTGTTGTAATCCCCTCAAAGTGTAAAAGAGGCTTCTTTCTTCTTTCTTCTTTGTTTGCTTCTCTCTTTGTTTGTTTGCT TTTGAGTTTTGTGTTATGGATTTTTGTTTTTATTGTTTTGAAATTTGGATTTTTTTTTTTGTTAGGGGAATATTGGAGGA GTTGTTAAACCTATGGAAGGTTCAAACTCAAAGGCTAATATTAATAATAATCCTATGTTGGAGAGAAGGGCAAGGCCACA GAAAGATCAAGCTTTGAACTGTCCAAGGTGCAATTCAACCAACACAAAATTCTGTTACTACAACAACTACAGCCTCTCTC AGCCAAGGTACTTTTGCAAGACTTGTAGAAGGTATTGGACTGAAGGTGGTTCCTTGAGGAATGTTCCTGTGGGTGGTGGC TCTAGAAAGAACAAGAGATCCACACCATCATCTGCATCAACACCCGCATCATCATCAACACCTTTATCATCAACAATCAA CAAAGCACCACTAAATTTCCCTCAATCTGCTTCTCAGAACCCAAAGATCCATCAAGGCCAAGATCTTAACCTAGCATACC CACCTCCACCTGAGGACTACAACACCATATCAAAATTCATGGAGGTTCCTTACAACAACAATGAAAACAACCAACACATT CAAAACACCACTCCCTCTTCAACAACACCTTCTCATCTAGAGCTTCTTAAAACTGGGATAACTTCCTCTTCAAGGGGTTT GAATAATTCTTTCATCCCTATGAATTTGTCTGATTCTAGCACAATGTATAATTCAAGTGGGTTCCCCTTGCAAGATTTTA AGCCAGGACTTAACTTTAGCCTTGAGGGTTTTGAGAATGGCTATGGGGGTCTCCAAGGGATTCAAGAGGGTGGTTCTGGT GGTGCAAGGATCTTGTTTCCTGTGGAGGAATTGAAGCAACAAGTTCCAAACAGTGGTGAGTTTGAGCAGAATAGGAGTCA AGGAGATTCAGCTGGGTATTGGAATGGCATGTTAGGTGGAGGATCATGGTAGATATTGCACAAGGAATTGAGGAAAAAGT GGGGGAAAAAAAGTGAACAAGGGTTGGTGTTCTGTAGTATGTTTGGGATCAGCAGTTCCTATTTTATCAGAATCAATTCA AGGCACAGCTTTCAACGTGATTCTAGAAGACCTTGCCAAACATGCTATTAGACTTTGTTGTGTTAATTTTATTTTTCATT TGATAATTTGAGGGAGTGGCTATTTGGACTTTGGAGTGATGAGAACCACTAACATAGTAGGGTACATATAGCTTCTATTT TGTTTATTTGCAGCAATGTTTGAATTCATGTTTTAGATTTTTCAGAACTATTTATGCTTCTCCTAGCCTTCTTTCTTTTA TGAAAATTTGGCATTTATCCAAACATGCACATAATTTTTCTTTGTGACATCTTTTCCCATTCCTAGTCTCAGGTTTTAAT GATCTTTTGCTTCACTTTATTTATCTTCCAACTTTTGATCCAGAAAAATCTTTGCTTTTTTTCATTTGTATTTGGGTTTG GGTACCCTTGTATCCTTCAATATATTTATATACTTCCTTTGCTGATAAAAAATAAAAGAAGAATGTGGCTGCGTTTTGAG GCTAGCTACTATATCTTTTCATTTTAGGTTAAGCTTCATGAGTCAAGAGCAGTTCCTAATTAACCTAGGCTATAGCTTAA GCCTTTTTAACTGATTTTCTAGCTAGCTTTCCTGTGACTATTACTATTGTTCTTGGGGTTTTCCCAGGATCATCGCGCAC GGTTTGCTGCTACCACAGCAAGGAAAGGATTCCCATCAATACTAGTCACTTGTCAGGTACCAAGAGAGATTCGTTGTTCA CACATTAAAGTTGATGAGATTTAACTCATATCAGTATATCACAGTTGTAATGGTCACTTTATGTAACCATTGTTTAATCT ATATCTTAATTCTAATTAGAATGTATAAATGTTTGAAAATTCTCCTATAACTAATTTTAAAGTTAGAATTGATTTTAGGA AGAAGCTTCTCCCGGAAAAGCTTTTGTTGTAACTTCTCAGTCTGAGAAATGAAAAGTTAATTTGGACATATTAAGCGCAA AGTAGTTCAGCTTCACTAAATATAATTTTTGAGTTATGATATACACACACTTCTCCACTCTTTTTCTACTTTCATTTTCT ATTATTTCTCTTTTCTCTAT

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0290200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACACAGCTCAGTGGGCACAGGGGAATATTGGAGGAGTTGTTAAACCTATGGAAGGTTCAAACTCAAAGGCTAATAT TAATAATAATCCTATGTTGGAGAGAAGGGCAAGGCCACAGAAAGATCAAGCTTTGAACTGTCCAAGGTGCAATTCAACCA ACACAAAATTCTGTTACTACAACAACTACAGCCTCTCTCAGCCAAGGTACTTTTGCAAGACTTGTAGAAGGTATTGGACT GAAGGTGGTTCCTTGAGGAATGTTCCTGTGGGTGGTGGCTCTAGAAAGAACAAGAGATCCACACCATCATCTGCATCAAC ACCCGCATCATCATCAACACCTTTATCATCAACAATCAACAAAGCACCACTAAATTTCCCTCAATCTGCTTCTCAGAACC CAAAGATCCATCAAGGCCAAGATCTTAACCTAGCATACCCACCTCCACCTGAGGACTACAACACCATATCAAAATTCATG GAGGTTCCTTACAACAACAATGAAAACAACCAACACATTCAAAACACCACTCCCTCTTCAACAACACCTTCTCATCTAGA GCTTCTTAAAACTGGGATAACTTCCTCTTCAAGGGGTTTGAATAATTCTTTCATCCCTATGAATTTGTCTGATTCTAGCA CAATGTATAATTCAAGTGGGTTCCCCTTGCAAGATTTTAAGCCAGGACTTAACTTTAGCCTTGAGGGTTTTGAGAATGGC TATGGGGGTCTCCAAGGGATTCAAGAGGGTGGTTCTGGTGGTGCAAGGATCTTGTTTCCTGTGGAGGAATTGAAGCAACA AGTTCCAAACAGTGGTGAGTTTGAGCAGAATAGGAGTCAAGGAGATTCAGCTGGGTATTGGAATGGCATGTTAGGTGGAG GATCATGGTAG

Download CDS Sequence

Protein sequence (LotjaGi1g1v0290200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDTAQWAQGNIGGVVKPMEGSNSKANINNNPMLERRARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWT EGGSLRNVPVGGGSRKNKRSTPSSASTPASSSTPLSSTINKAPLNFPQSASQNPKIHQGQDLNLAYPPPPEDYNTISKFM EVPYNNNENNQHIQNTTPSSTTPSHLELLKTGITSSSRGLNNSFIPMNLSDSSTMYNSSGFPLQDFKPGLNFSLEGFENG YGGLQGIQEGGSGGARILFPVEELKQQVPNSGEFEQNRSQGDSAGYWNGMLGGGSW

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	29	29	-	–
PANTHER	PTHR31992:SF113 View details on PTHR31992:SF113 Search for proteins/transripts with this domain View external data on PTHR31992:SF113	1	296	296	4.7E-128	–
PANTHER	PTHR31992 View details on PTHR31992 Search for proteins/transripts with this domain View external data on PTHR31992	1	296	296	4.7E-128	–
Pfam	PF02701 View details on PF02701 Search for proteins/transripts with this domain View external data on PF02701	42	99	58	8.4E-34	IPR003851 Show description in modal box View details on IPR003851 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50884 View details on PS50884 Search for proteins/transripts with this domain View external data on PS50884	45	99	55	29.264	IPR003851 Show description in modal box View details on IPR003851 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSitePatterns	PS01361 View details on PS01361 Search for proteins/transripts with this domain View external data on PS01361	47	83	37	-	IPR003851 Show description in modal box View details on IPR003851 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	83	150	68	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	94	139	46	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	271	296	26	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003677 View details of GO:0003677 AmiGO InterPro QuickGO	Molecular function	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).	Subterm of View details of GO:0003676
GO:0006355 View details of GO:0006355 AmiGO InterPro QuickGO	Biological process	Regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.	Subterm of View details of GO:0010468 View details of GO:1903506 View details of GO:2000112 Regulates View details of GO:0006351

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0290200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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