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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0290200 |
Transcript ID | LotjaGi1g1v0290200.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Dof zinc finger protein; TAIR: AT3G61850.4 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp|Q43385|DOF37_ARATH Dof zinc finger protein DOF3.7; TrEMBL-Plants: tr|A0A1J7H8V2|A0A1J7H8V2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0290200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:70541040..70543396) extracted from Lotus japonicus Gifu genome v1.2.
CCACTACCATATCCCTCTCAACTCTGGAAGCTTTACGCACTTGCTTTATATTCCCATCTTTGAAAAAAGTGGGTGTGTTT CTTTCTCTGAGGACTCGTAGTAGCTTTTCCTTTTTTCCATCCTTCTTAAATCCATGGACACAGCTCAGTGGGCACAGGTA CACACAGACACTTTTTTCTGTTTTTCTTTCCATATAATAATGAAAATCTCTTCTGGGGGTTGTGATTATCAACCATATAT AGCTCAGATCATTAATAAGTTTTGGGCTTTTGGAAAATTTATTTTGATCACTATTGTTAATTAATTAGTTCTGAGGAAAG TTTTCACTTTATCTCCAACTTTTCTCTGATGTTGTTTCAGTTCAGTAGTCTCCCACTAAATTCAATTTAAAGTGTACTGC ACACCTTTCTTTTTCCACCATCTGATAAAGGACCCAAGAAAAAGTGACTAAAATTTGTTTGTTTCATGCTGCTGCTGTTG TAATCCCCTCAAAGTGTAAAAGAGGCTTCTTTCTTCTTTCTTCTTTGTTTGCTTCTCTCTTTGTTTGTTTGCTTTTGAGT TTTGTGTTATGGATTTTTGTTTTTATTGTTTTGAAATTTGGATTTTTTTTTTTGTTAGGGGAATATTGGAGGAGTTGTTA AACCTATGGAAGGTTCAAACTCAAAGGCTAATATTAATAATAATCCTATGTTGGAGAGAAGGGCAAGGCCACAGAAAGAT CAAGCTTTGAACTGTCCAAGGTGCAATTCAACCAACACAAAATTCTGTTACTACAACAACTACAGCCTCTCTCAGCCAAG GTACTTTTGCAAGACTTGTAGAAGGTATTGGACTGAAGGTGGTTCCTTGAGGAATGTTCCTGTGGGTGGTGGCTCTAGAA AGAACAAGAGATCCACACCATCATCTGCATCAACACCCGCATCATCATCAACACCTTTATCATCAACAATCAACAAAGCA CCACTAAATTTCCCTCAATCTGCTTCTCAGAACCCAAAGATCCATCAAGGCCAAGATCTTAACCTAGCATACCCACCTCC ACCTGAGGACTACAACACCATATCAAAATTCATGGAGGTTCCTTACAACAACAATGAAAACAACCAACACATTCAAAACA CCACTCCCTCTTCAACAACACCTTCTCATCTAGAGCTTCTTAAAACTGGGATAACTTCCTCTTCAAGGGGTTTGAATAAT TCTTTCATCCCTATGAATTTGTCTGATTCTAGCACAATGTATAATTCAAGTGGGTTCCCCTTGCAAGATTTTAAGCCAGG ACTTAACTTTAGCCTTGAGGGTTTTGAGAATGGCTATGGGGGTCTCCAAGGGATTCAAGAGGGTGGTTCTGGTGGTGCAA GGATCTTGTTTCCTGTGGAGGAATTGAAGCAACAAGTTCCAAACAGTGGTGAGTTTGAGCAGAATAGGAGTCAAGGAGAT TCAGCTGGGTATTGGAATGGCATGTTAGGTGGAGGATCATGGTAGATATTGCACAAGGAATTGAGGAAAAAGTGGGGGAA AAAAAGTGAACAAGGGTTGGTGTTCTGTAGTATGTTTGGGATCAGCAGTTCCTATTTTATCAGAATCAATTCAAGGCACA GCTTTCAACGTGATTCTAGAAGACCTTGCCAAACATGCTATTAGACTTTGTTGTGTTAATTTTATTTTTCATTTGATAAT TTGAGGGAGTGGCTATTTGGACTTTGGAGTGATGAGAACCACTAACATAGTAGGGTACATATAGCTTCTATTTTGTTTAT TTGCAGCAATGTTTGAATTCATGTTTTAGATTTTTCAGAACTATTTATGCTTCTCCTAGCCTTCTTTCTTTTATGAAAAT TTGGCATTTATCCAAACATGCACATAATTTTTCTTTGTGACATCTTTTCCCATTCCTAGTCTCAGGTTTTAATGATCTTT TGCTTCACTTTATTTATCTTCCAACTTTTGATCCAGAAAAATCTTTGCTTTTTTTCATTTGTATTTGGGTTTGGGTACCC TTGTATCCTTCAATATATTTATATACTTCCTTTGCTGATAAAAAATAAAAGAAGAATGTGGCTGCGTTTTGAGGCTAGCT ACTATATCTTTTCATTTTAGGTTAAGCTTCATGAGTCAAGAGCAGTTCCTAATTAACCTAGGCTATAGCTTAAGCCTTTT TAACTGATTTTCTAGCTAGCTTTCCTGTGACTATTACTATTGTTCTTGGGGTTTTCCCAGGATCATCGCGCACGGTTTGC TGCTACCACAGCAAGGAAAGGATTCCCATCAATACTAGTCACTTGTCAGGTACCAAGAGAGATTCGTTGTTCACACATTA AAGTTGATGAGATTTAACTCATATCAGTATATCACAG
CDS sequence (LotjaGi1g1v0290200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGTTCAAACTCAAAGGCTAATATTAATAATAATCCTATGTTGGAGAGAAGGGCAAGGCCACAGAAAGATCAAGC TTTGAACTGTCCAAGGTGCAATTCAACCAACACAAAATTCTGTTACTACAACAACTACAGCCTCTCTCAGCCAAGGTACT TTTGCAAGACTTGTAGAAGGTATTGGACTGAAGGTGGTTCCTTGAGGAATGTTCCTGTGGGTGGTGGCTCTAGAAAGAAC AAGAGATCCACACCATCATCTGCATCAACACCCGCATCATCATCAACACCTTTATCATCAACAATCAACAAAGCACCACT AAATTTCCCTCAATCTGCTTCTCAGAACCCAAAGATCCATCAAGGCCAAGATCTTAACCTAGCATACCCACCTCCACCTG AGGACTACAACACCATATCAAAATTCATGGAGGTTCCTTACAACAACAATGAAAACAACCAACACATTCAAAACACCACT CCCTCTTCAACAACACCTTCTCATCTAGAGCTTCTTAAAACTGGGATAACTTCCTCTTCAAGGGGTTTGAATAATTCTTT CATCCCTATGAATTTGTCTGATTCTAGCACAATGTATAATTCAAGTGGGTTCCCCTTGCAAGATTTTAAGCCAGGACTTA ACTTTAGCCTTGAGGGTTTTGAGAATGGCTATGGGGGTCTCCAAGGGATTCAAGAGGGTGGTTCTGGTGGTGCAAGGATC TTGTTTCCTGTGGAGGAATTGAAGCAACAAGTTCCAAACAGTGGTGAGTTTGAGCAGAATAGGAGTCAAGGAGATTCAGC TGGGTATTGGAATGGCATGTTAGGTGGAGGATCATGGTAG
Protein sequence (LotjaGi1g1v0290200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGSNSKANINNNPMLERRARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKN KRSTPSSASTPASSSTPLSSTINKAPLNFPQSASQNPKIHQGQDLNLAYPPPPEDYNTISKFMEVPYNNNENNQHIQNTT PSSTTPSHLELLKTGITSSSRGLNNSFIPMNLSDSSTMYNSSGFPLQDFKPGLNFSLEGFENGYGGLQGIQEGGSGGARI LFPVEELKQQVPNSGEFEQNRSQGDSAGYWNGMLGGGSW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 279 | 279 | 2.6E-122 | – | |
MobiDBLite | 1 | 28 | 28 | - | – | |
PANTHER | 1 | 279 | 279 | 2.6E-122 | – | |
Pfam | 25 | 82 | 58 | 7.6E-34 | ||
ProSiteProfiles | 28 | 82 | 55 | 29.264 | ||
ProSitePatterns | 30 | 66 | 37 | - | ||
MobiDBLite | 66 | 133 | 68 | - | – | |
MobiDBLite | 77 | 122 | 46 | - | – | |
MobiDBLite | 255 | 279 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0290200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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