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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0291400 |
| Transcript ID | LotjaGi1g1v0291400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box-like protein; TAIR: AT5G52880.1 F-box family protein; Swiss-Prot: sp|Q9P7W4|POF10_SCHPO F-box/WD repeat-containing protein pof10; TrEMBL-Plants: tr|I3SWE6|I3SWE6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0291400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:70751920..70754560) extracted from Lotus japonicus Gifu genome v1.2.
AAATTTTTTATAAAAAATTGTGAGAAAAATATTAGAAACTCAAATCAGCAAGCACACATACACATGCATCTTTACTTGAA AGTGCTAACTAAGTCAATCCGTGAACAGAGCGGGTAAAAAAGTAGTTATGACATGTGTCGTCCAGTCCTCATCCCTTATT GGATTTGGAAGCAACTAGATTTCTCATTGTAACTATCTCCACTCCACTCCACTCCACACCACCGAACGAACACAATCACA CGAACAACGACGAAAATTGAATTCTCACAAGTGTGAATTCAACTCCTCAAAATGGAGGGTTTGCCTTTGGAAATCTGTAT GAACATTTTCTGTTTCTTGGATTACCAGCATCTAGCAGTTGCTCAACAAGGTTGGTTGGTCCATTCAAATTGATTTCTGA AATTCTAATTATTAGCATGTTCTATCAATTGAATTGAATTGTTGATTTTAAGATCTCAATTGGCCTGGGTTTCGGTTCAA TTACTGGTCTGAATGATCTGGTCTCTATCTGTTTCAATTGGATCCTTCATTTGGGTACTTACTATACATGATTGATAGAG AATTGATTAAAATTGATCATGATCTAGAATCTGTTGATTGGTTAATTTGTTTAGTCTTACTCTTTCCCGAATCATGTCAT TCGTTGACTCTGATTTTCATGTAATGTTAAATTGATGCATTTTTATGATATAAAAGAAAAAATTTGGTGGAAGAGAATGC ATTGTTGGTATTTTTGGGAATAAACTGAGAAAGCTGCTACATTCCTCACATATTGCACCAAACCTGTATCCAGTTACCCC ACCCTGGTTATCTTATCCAGATTTTAATACTGCTAGTATTCATTCACCATTCTAAATTTCTAATTGATCGCAGCTTGGTG TTGATTGATAATTTTTCTGTGATTTAGTGTTTTATCAGACATTTGAGGTTCGCCATTTTAATACGATTAGAATTGAATCA AATCAAAACTTTAGAATAAGGAAAACATGTTGGGGGTAATGTGTGCTTTAAAATTTCTAGAGAATACAATTTTTATTAGC CTTAGTTGGTTGTAATTTACATTGGTGAGAATCAGGGATTTGTTAATTGGCAAATGGGTGTGTTAATAGTGAATTAATAT CACTCCCAAAAAGTACAATTTGACTAGTTTTACACTTTTACTTTACTTTACTTTTCTGAGTTTTGTTAGCTTATATTGAT AAGCCATGGATTTGACAATTTGTTGTACAGTCTGCAAGAAGTGGAAGGTCATGGCTTCAGAGAATGCTATATGGTCTAAC CTTTTTCTGGAGAGATGGGGAGGGGACCGCGCTGATTTTTACGCTCCAACGGGTTCAAAATCATGGAAAGATGTATATGA GGTGCAAGATCGTTGTGACCGCGTTGGAGTGTAAGTTGTTTATGATGCTCCTATGCGATTGATTGATGTCCTTTGCAAGT ATTTTCAAGGTGTTCCTACAGAGAGTTGTTTTTGTTTTCTTTTTTCTCTTGTTTACCAAAAAAAATTTACTCTACTGAGA GTATGGCAATGCAAATGCACACAAGCACCACTCATAATTCATCTTGAATGTCATGATGGTTGGGGAAGCTTTTTCTTTCT CACTGCTTAATTACTATGTGCATTTTCCCCTTGAGATGACATGATTCACTTTACTGCTTATTAGTCATTACAGCAGCTAC AACATTGATGTTGGCTTCCTCGGACCCAGAGGTGGACCCAGCTATACTAATATTGGGGCAGTCGCCTCCAAGAGGAAAAA AAAACATTTCTTAATAGAATACTGTATCCATCAAAATTTTCACACTGCCTCCTCTAGTTAACCAATGATAGTTTTACTTA ATGTGTTAAATTTTCACCCGTGATATATTCCTCTCGGGTTGAGCTTTAACATGAACATAGTTATTCAACAAAACAATTAT AGTCTCAAAGTTGTGTTGGAATTAGGAAATGTGTCTGGACTCTGGAATTCAATCTGCAGTTATACACTAAAATAATTTAA TCTTTGGCAAAAATTATAGGACTTTATTTAAGGGAATGATTCATTTAATTCTCCACAAAATAGGGGTTTGAAGATAATTA GAGAAGGCTGTGACTACTACCTTGTTCACCTAGGTGAGATCCAGCAATATCTGGGTTCAAGAAAGAATAGGGAACAAGCA ACAAGCCAGAGCTGCCACACTTCCAGTTCAGAAAAAAGGGACTTGAGTGGAGAAGGTTCCCTAGCTGAAGAGAGATCATG TCGAGGAATTTTGGACAGAATCCTTTTTTTCATCGGGGATTTGGAAGTTGCTTCCGCGGGTGCAAAACGCAGCCGTTTGA TATGAACATCCCTGCTATTCAATCCAATTGTGATGTTCATTGTAGAATTTCAGTGTATGTAAGCATTGTTCTGTGTATGT ATATATGCTTATCTGTAAAAACAAGGTATTCAGTTATTTTGCAGAACTTGAATTTGTTAATCCTCCTATATAGAACTTTA ACTTGTATTATCAGATGATCCTGTCAAAGTGCACCAATTACTGGGGACTGGGGTGGACACTATCAGTTCACAAGTACTGG GTAATGTTAAGTTCAGTTTCATTGTTTGAAAGACATAAGTGATTGATAAAAGGTTTAAATAAGTTTTAGACCGGCATCTA A
CDS sequence (LotjaGi1g1v0291400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGGTTTGCCTTTGGAAATCTGTATGAACATTTTCTGTTTCTTGGATTACCAGCATCTAGCAGTTGCTCAACAAGT CTGCAAGAAGTGGAAGGTCATGGCTTCAGAGAATGCTATATGGTCTAACCTTTTTCTGGAGAGATGGGGAGGGGACCGCG CTGATTTTTACGCTCCAACGGGTTCAAAATCATGGAAAGATGTATATGAGGTGCAAGATCGTTGTGACCGCGTTGGAGTG GGTTTGAAGATAATTAGAGAAGGCTGTGACTACTACCTTGTTCACCTAGGTGAGATCCAGCAATATCTGGGTTCAAGAAA GAATAGGGAACAAGCAACAAGCCAGAGCTGCCACACTTCCAGTTCAGAAAAAAGGGACTTGAGTGGAGAAGGTTCCCTAG CTGAAGAGAGATCATGTCGAGGAATTTTGGACAGAATCCTTTTTTTCATCGGGGATTTGGAAGTTGCTTCCGCGGGTGCA AAACGCAGCCGTTTGATATGA
Protein sequence (LotjaGi1g1v0291400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGLPLEICMNIFCFLDYQHLAVAQQVCKKWKVMASENAIWSNLFLERWGGDRADFYAPTGSKSWKDVYEVQDRCDRVGV GLKIIREGCDYYLVHLGEIQQYLGSRKNREQATSQSCHTSSSEKRDLSGEGSLAEERSCRGILDRILFFIGDLEVASAGA KRSRLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 163 | 163 | 4.0E-51 | – | |
| PANTHER | 1 | 163 | 163 | 4.0E-51 | – | |
| Gene3D | 1 | 78 | 78 | 2.5E-15 | – | |
| ProSiteProfiles | 1 | 44 | 44 | 12.491 | ||
| Pfam | 3 | 46 | 44 | 6.3E-10 | ||
| SUPERFAMILY | 3 | 74 | 72 | 1.64E-17 | ||
| SMART | 4 | 44 | 41 | 6.6E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0291400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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