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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0291700 |
| Transcript ID | LotjaGi1g1v0291700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT3G25270.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151SJB1|A0A151SJB1_CAJCA Putative ribonuclease H protein family; Found in the gene: LotjaGi1g1v0291700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:70771644..70773009) extracted from Lotus japonicus Gifu genome v1.2.
AGGTAATCGTAAGAAAGTTGTTTGATCAAAAAATTTGATTGTTTGATCTGTGTTTTTCAAAGAAAAAAAAAAACAATTCG TGGCGGTTTGAAACCCCCGCTAAATAATTCCATTAAAATCGTGCTGACAACTCTCTCGCTCTTTAATCTCTCTTTCTACA AAATGCATATTGGGGTCATCAAGGAGTGTGTTAAACTAATGAGAAAGTTTCTGTGGAGAGCAACAAGTGAAGAGGAAAAT AAAATAGCATGGGTGAAGTGGAAAACGATTTGTAGGCCCAAAGAAGAGGGTGGCTTGGGAGTAAAAGAGTTGGGTATGTT TAACAAGGCTATTTTGGAGAAGATTGGGCAGGGCACGATAGGCTAAGAGATAAATTTGGGAGACCTTTCTCCTTACCCAA CCAACAACAGAATCTGGTCATAGATATGGGAAAGTGGATTGATGGGAATTGACAATGGGAACTTACTTGGAGAAGAGAAA TAATCCTGAGTAGAGAGCAAGGTATGCTGGAAACTTTGATCCTACAACTATCCAATTTCACTTTGTCTAAAGGAACACTA GATTCGTGGATTTGGACAAAGGAAGAACATGGTAATTTTTCGGTTAAATCAGCATTATATGTGATGCTTCAATGAGAGGT GATGGAACAACTTGATAGATCCTTTCATTGCTTGTGGTCCCTTAAAGCACCTTTTAATGTTTTGTCTCCGGCATGGAAGG TGATGTTAAATCGTGTTCAATCTAAGGAAAATCTCAGAAAAAGGAAAGTCCTCCACAATTCTGCCCAAACAACGCGTTCT TTGTGTTCCCAAGCTTCTGAATCGACTTCACATCTCTTCTTCACTTGTGCTTTCTCATGGGTAATCTGGGGTAAGGAGTA CTACTGGCTTGGTACCCAAACAATTTCTCCTGAAGACAGTATTCCTCACTTTCTCAAGTTCTTCGGACGATATGAAGGAA AAGATAGAAAACATGGGGTGGGTCTCATATGGTTGGCCTCGGTTTGGTTCATTTGGATCCTCAGGAATAATGTGATTTTT AAGAAGAAGGAACCAGAGTTATTGAATGCCCTGGAAGTGATTCAATACAGATCTTGGGTTTGACTCAAAACAAAAGTTAT TGAATGGACAGTAAATCCCTTAGTTTGTCTGGATTACCTTTTTAAGATTTCAAACATTGGTGGGTGGAGTCCACCTTCAC CCTTGGTTGAGGGATTATGGACCAAAATTTTATTGGGGCAACATACTTGTTAGCTTAGCATTTGATGTTGTTCTGGGCAT GCTCTGTTTACGACTCCAACAAGATAGGATTGGTGGGTTGAGTATGGAAATGGTGTTGTAATATGATTTTGGACGAGCAA CCTTGA
CDS sequence (LotjaGi1g1v0291700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACAACTTGATAGATCCTTTCATTGCTTGTGGTCCCTTAAAGCACCTTTTAATGTTTTGTCTCCGGCATGGAAGGT GATGTTAAATCGTGTTCAATCTAAGGAAAATCTCAGAAAAAGGAAAGTCCTCCACAATTCTGCCCAAACAACGCGTTCTT TGTGTTCCCAAGCTTCTGAATCGACTTCACATCTCTTCTTCACTTGTGCTTTCTCATGGGTAATCTGGGGTAAGGAGTAC TACTGGCTTGGTACCCAAACAATTTCTCCTGAAGACAGTATTCCTCACTTTCTCAAGTTCTTCGGACGATATGAAGGAAA AGATAGAAAACATGGGGTGGGTCTCATATGGTTGGCCTCGGTTTGGTTCATTTGGATCCTCAGGAATAATGTGATTTTTA AGAAGAAGGAACCAGAGTTATTGAATGCCCTGGAAGTGATTCAATACAGATCTTGGGTTTGA
Protein sequence (LotjaGi1g1v0291700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEQLDRSFHCLWSLKAPFNVLSPAWKVMLNRVQSKENLRKRKVLHNSAQTTRSLCSQASESTSHLFFTCAFSWVIWGKEY YWLGTQTISPEDSIPHFLKFFGRYEGKDRKHGVGLIWLASVWFIWILRNNVIFKKKEPELLNALEVIQYRSWV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 110 | 110 | - | – | |
| PANTHER | 5 | 141 | 137 | 1.1E-22 | – | |
| PANTHER | 5 | 141 | 137 | 1.1E-22 | – | |
| Pfam | 5 | 76 | 72 | 1.4E-12 | ||
| Phobius | 111 | 127 | 17 | - | – | |
| Phobius | 128 | 153 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0291700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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