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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0293200 |
| Transcript ID | LotjaGi1g1v0293200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dof zinc finger protein; TAIR: AT3G61850.4 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp|Q9ZPY0|DOF25_ARATH Dof zinc finger protein DOF2.5; TrEMBL-Plants: tr|I3SV35|I3SV35_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0293200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:71137795..71139894) extracted from Lotus japonicus Gifu genome v1.2.
AGAGAATAAAACATCATGAGTGAAGAGGAGTTGAAAGCATGGTCAAAACCGACACATTTCTTCTCAAACTTTCTCATTCT TTTTCCTTTATGCATCATTCAAAAAGTAGATAAAGCCAACCCACAAACCAACTAAAACATTCTTTCTATTGCACCCACCC AGGAGAGCACCTAGCTGCACACAAATTAACAAGGTGAACTCTCTCTCTCTCTCTTTCTCTAAACTCATCCATTGCTTTTC TCTTTGTGATTTTCTTCTCTGAAAGTCCATTTTTTCTCATGTCTTTTCTTTGATGCACAAATTCTTCAAAACTGACACAA ATATGAAGTTCCACTAAATTTAAGGGTTATTAATTTGTATCTTCATGGAGATGGTGTTCATGGTAACAGGAAGGTGCATC ATATATATATTAGTATCCTATTTTCTCCCTTTTCTACCAACTTAAAAAAACAAGTTATGATGAGGTCCTAAGTATACAAA AGCACCACTCCTTCTTTTCCTCTCCTTTACCTTTTCACCCATGAGTCATTCGATAAATGTCGTCAAAGAGAAGAAAATAA AAACGGTTCATTTATTATTTTTGTTGGAAGTTGGAACCCAGGCTAGTACTCTTGTTAATTATCTCCTTAATCTGTTTCTG CAATGAAATTGTATTACTGAGTCAGGATCTAGAAATCTTTTGTTTGCATGGATTAATTTTTGTAACATATGAACTTTAAT TATTATGTAATTATGTAGATCTCCTATCTGTTTGGGAGTTTGGCAGTGAGAGAGCAATGGAAGCAGGGTTAGCTCCAAAT TCATGCACAACAAGGGGAGTGTTAGAGAAGAAGACAAGCCCACAACCACAAGAGCAAGTGAATTGTCTAAGGTGCAATTC AACCAACACTAAGTTCTGCTATTACAACAACTACAGCCTCACACAACCCAGATACTTCTGCAAGACATGCAGAAGGTATT GGACAGAAGGAGGGTCTCTCAGAAATGTCCCAGTTGGAGGTGGTTCAAGGAAGAACAAGAGGATCATTACCTCAGCTTCA CCAAAGGTTATTCCAGACTTAAATCCACCAATTCCAAATGCAAGCCTTAATAAAGTGCAACAAGTAGGCCATGATCTTAA TTTGGCTTTTCCAGCTATGGGGAATTATCATCATGGTCATGGCATGTCATCTCCATATGTTGAAATGGGTCATGAGACCA GTAATTACCATATTTCTTCTTCTTGTTCTGCAGCTCCAATTGATTTATTAAGGTCTGGCTTGGTGGGTTCTAGGGGTTTG AATCCTTATGTTGTGATGCCAATGAGCTCAAATTCCCATTACCCTGCATCTGGGACTGGGTTCCCCATGCAGGAAATGAA ACCAACCCTTGGGCTGGGCTTTTCACTTGATGGGCTTGAAAACAGATCATATAATGGGGTCCATGAGAATAATGGTGGAA GTGGGAGACATTTGTTCCCTTTCGGAGGAGACATCAAGCAACTTTCTGCTACAACTACTAGTGTTGAACTTGAAGTGGAA CACAGTAATAAAGAAGAAGGAAATAACTCAACTGGATATTGGACTGGAATTAATGATTGGTGAAGGGTCATCATCATGGT AATTAAGGAAAGTAATTAAGGGAGAACAAGAAAATCCAGCATGACCTGTTTGAAGGTGTTCAGAACTAACAATAGGATAC ATATTCGAGCAATGTGAGGATTTTACAGCTCTCATCTTGTTTTTCTTTTTATTATATATTTAAAGATAGAAGAAGAGGTG AATATAGGACCTGCTCTTGCTTGAGTCATACAACCTGTATTCATGAATTCTTCTGTCAGAATTAAGTAGATTGATCACCT TTATTGGTGTATGCTTTATGAATGACTTTTGGTGATTAAGGAAGGAAAGACTTAGATGTTCGAGTTTGTAAGTGTAACCA TGCATAATATTACTATATATTGATTGAGTGGAGCTTTGTTCAAGTTATTCCTATTACTATTTGTATGTGTACAAAGTTTA GTGGGTTGTGTCAGCTTTGAAATCTAGATCATCACATCCAACTATCCAAGATTCCTCCAACTATGAAAGCACTTGGTAGA ATTATTCGGAAGACACCATA
CDS sequence (LotjaGi1g1v0293200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCAGGGTTAGCTCCAAATTCATGCACAACAAGGGGAGTGTTAGAGAAGAAGACAAGCCCACAACCACAAGAGCA AGTGAATTGTCTAAGGTGCAATTCAACCAACACTAAGTTCTGCTATTACAACAACTACAGCCTCACACAACCCAGATACT TCTGCAAGACATGCAGAAGGTATTGGACAGAAGGAGGGTCTCTCAGAAATGTCCCAGTTGGAGGTGGTTCAAGGAAGAAC AAGAGGATCATTACCTCAGCTTCACCAAAGGTTATTCCAGACTTAAATCCACCAATTCCAAATGCAAGCCTTAATAAAGT GCAACAAGTAGGCCATGATCTTAATTTGGCTTTTCCAGCTATGGGGAATTATCATCATGGTCATGGCATGTCATCTCCAT ATGTTGAAATGGGTCATGAGACCAGTAATTACCATATTTCTTCTTCTTGTTCTGCAGCTCCAATTGATTTATTAAGGTCT GGCTTGGTGGGTTCTAGGGGTTTGAATCCTTATGTTGTGATGCCAATGAGCTCAAATTCCCATTACCCTGCATCTGGGAC TGGGTTCCCCATGCAGGAAATGAAACCAACCCTTGGGCTGGGCTTTTCACTTGATGGGCTTGAAAACAGATCATATAATG GGGTCCATGAGAATAATGGTGGAAGTGGGAGACATTTGTTCCCTTTCGGAGGAGACATCAAGCAACTTTCTGCTACAACT ACTAGTGTTGAACTTGAAGTGGAACACAGTAATAAAGAAGAAGGAAATAACTCAACTGGATATTGGACTGGAATTAATGA TTGGTGA
Protein sequence (LotjaGi1g1v0293200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAGLAPNSCTTRGVLEKKTSPQPQEQVNCLRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKN KRIITSASPKVIPDLNPPIPNASLNKVQQVGHDLNLAFPAMGNYHHGHGMSSPYVEMGHETSNYHISSSCSAAPIDLLRS GLVGSRGLNPYVVMPMSSNSHYPASGTGFPMQEMKPTLGLGFSLDGLENRSYNGVHENNGGSGRHLFPFGGDIKQLSATT TSVELEVEHSNKEEGNNSTGYWTGINDW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 265 | 256 | 6.3E-79 | – | |
| PANTHER | 10 | 265 | 256 | 6.3E-79 | – | |
| Pfam | 26 | 82 | 57 | 5.9E-32 | ||
| ProSiteProfiles | 28 | 82 | 55 | 27.978 | ||
| ProSitePatterns | 30 | 66 | 37 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0293200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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