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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0295600 |
| Transcript ID | LotjaGi1g1v0295600.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polyadenylate-binding protein; TAIR: AT1G32790.1 CTC-interacting domain 11; Swiss-Prot: sp|Q9LPI5|CID11_ARATH Polyadenylate-binding protein-interacting protein 11; TrEMBL-Plants: tr|V7AS09|V7AS09_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0295600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:71611253..71619553) extracted from Lotus japonicus Gifu genome v1.2.
ATTCCTACGGATGCATGATATGATGTACTAAATCTACAATGCATGATGGATGACATATGTGAATGGGTAGTTATGGAAAT TAATAAGAAATTGGGTCCCTTTTATGTAATTTTTTAATTTATAATTTTTCCTCCTTTGATACATTCATCATCATCATCAC AACCCAAGACATCAAATTTGGGACGTTCTGCTTAGGAAGGTCCAAAAAGTCAGTGCAGCAAAAACAAACGATCCGAAGAA TAATATCCTTTTTTCATCCTTCTCTCTCTACATTCTCTCTCTACAATCATCATCAACAACAGTGAGGTAAACCATCTCTT CCTCTTCCTCTTCCATTTCACCAAAGTTCTTTCCTTTGAGTAATTTCTTTTGTGGGTTTTAAACTAAAGTTGTGAAACTC ACAATTTTTCAGGATCATTTTGGTCTTACTTTGATGGAGATTTGTTAGATAAAACCAAAGGTATAAACTTTCTTTTTCTT ACATGGTTTTCTGGTACTGGGTCGTGTCTTGTTTTGTTTCATGTTTCTTTGTTTGTTCAATCTCTTGTTACAGATTCGCT GAAATTGTGTAAGAGATAAAAAAAGGTGAGAACTTTTTACCTCTAGACAAGTGATCATGGCGGTTGCTGAGAATGCTGGA GCCAAAATCGGTTCTTCCGGTCAGAATTTGGACAACAACAACACTGTTGTGTCAGCTGAGGACTCAAGTGAGGTGGAGAA ATCGAAGACTAGGACCGATCAGAATCTGAGCAACGGTGGTTTCAACCATGAACATCATCCTGGGAACATAGCAGTTCCTA ATGGCAACTACAGCTATAATGCTCAAGTGGGTCAGATGCAAGCAAATGGTGTCCAGAACCAGCAGCTTGTGATGAACAAT GATGGGTATGGGGAGAATGGGGATGAGAGTTTCAAGCGTGACATGAGGGATTTGGCTGAGCTGTTGTCAAAGTTGAACCC CATGGCTGAGGAATTTGTGCCCCCTTCACTGACTAATAGCCATGGCTATTTAGCTGGACCTAATGCTGGGTTTGGTTATC CTAACAATTTTATTCTGCAAAATGATTTTGGACAGACTAATAGAAGGGTATATTTTGATTTCTTTTGGTTCATACTATTG TTATCCCAATACTATGATAGTTTTCACATTTTTTAACATGGTTTTAACTTGTTACAGAGGAAGAATGTCTATAATTCTGG GAAGAGAAGAATTTTTCATAAGATAGAAATGGAGAAAAGGGATGAGATGATTCGGAGGACTGTTTACGTGTCTGACATTG ATCAACTGGTACAACTTTTAGCTGACTTGTGGTTTCTTTCATTTCGGCTGGTTTTGATGTTTTAAATGTGTATTCATTCC AGTGTTATCAAATAGCGGCTATAGCGGCGTAGCGGATTTTTGGCTAATCGCGACGACGCTATTGCTCACTTTAGCGCGCT ATTCCCGCTATTCGCCGCTAAATAGCGGCCGAAATAGCGGATTTTTAGCTCACCGTGATGGTCCGCGATCTCAATTTGAC AGCATTGATTCATTGGAATGATTGTTGTTTTCATGTATATTCGTTCAAATTATTGTTGTTTCCTTTTGGCATCTAGGTCA CTGAAGAGCAGCTGGCAGCTCTATTTCTTAACTGTGGCCAGGTAGAAACTGTTACAAATTGGTTAAGATGTTTGTTTTCT TGTTAATGTCGGTGCATGGTGTTACTGAACTAACTTCTTTTTTCCTGTCCATAGGTGGTTGATTGCCGTGTATGTGGGGA TCCTAATTCAATTCTTCGGTTCGCCTTTGTTGAGTTTACAGATGAAGGTAGCATTTCCATCAAATATATGTGGTTTACAT AGTAGTCAATCGCGGATTGCGGCCTGTTGCGGATGACCCCAAAAAATGAAATCCCATACAAGGGAAGACTGCTATTGGCC GCGAATAGCAGGATATTGCTGCCGCGATCCCGTTGTGGCAGGGGTCCGCTATGCTATGCGACGGTGCTATAGCGCTGCTA TCGCGGGCTATTGATAACTATGGTGGTTTTATTATTGACATTTCACTGTATTAAGTATTAACATTGTTGTGATTGCAGAA GGTGCAAGGACTGCTTTGAACCTGTCTGGAACTATGCTTGGATACTACCCACTGAGAGTGCTGCCTTCGAAAACTGCCAT TGCACCTGTTAATCCAACTTTTTTGCCCAGGGTAATGTTTTGTTTTTCTTAGAAATCCGTTTTACATGTATCAGAAGATG ATTGAACAGAGTGAACTTATAATGCATTTGTTTTCTGTCTTTCTGATGGTGCTACATTTCTTAGTCTGAAGATGAAAGGG AGATGTGCTCAAGAACAATTTACTGCACAAATATTGACAAGAAGGTAGTTAGGTTTTGATACTTCCTTAGAACCTTGCTT GGATGAACTATGTGGTCTTTTTCCATTTTGTATTGCAGCAATGCAGCAATCAAAACTCGAGATTCTTAATAATGTATGTT CCTGTTTCTGATGCAGCTTACTCAATCTGATGTCAAAAACTTCTTTGAATCTATTTGTGGAGAGGTTTGTAGCTTTTCAT GAAACAAGACCTATCTTGTCTATTGTTGGTTGAATTTTTCATCTTATGAGATATGTTCCTTTATTTGCTGTGGTCATCTT GGTTCAGTATTTTACTGTTTGTTGTCGGTTGAATATAAGTATCTTATATTTTCATACACTCATCTAGGTTCAACGGTTGA GGCTTCTTGGGGATCACAATCATTCAACTCGAATTGCTTTTGTTGAGTTCAAAGTGGTAATTACTCACTAACTTTTCAAT CGTCGTATTCTTATCTAACTTGTACCTGTTTACTTAGCTATAATATAACCCTCACAATGAGTGGTACTTCTGGCTTTGCA TTCGTCATTTTCTGACATGCGGTTATTATCCCCCTCCCCTTAGATCCCTTCCTCCCCAAAAAAAGTAAAACAATTCAAGT CTGTTTGTACGTTCTACTTCTTCTGGGTGCAACCCTTTCAATAATGGCATTTCATGCTTCCATAGTAGTAACTGCACATT TCCCTTTAAAACAGTTCCAAACAGTCCTTCATTTGATAAAAGGAATCAAGATAAAAGAGGAGTAAATCTTGATGTGTAAA CTCTGTAATGGGAGCTGCTAAGATCCTTCTACTCTTTTTTCGTTATGAGTATGATAGCAAGCTACATAAGAAAACACCCA TGCACTTTTTTTAAAAAAATATTAAATTTATGATTGTTGAAACAATATTTACTGATTATAAGTGAAAAAAAAAACTCTCA TTTTCTCATTTCTTCTCTTCTCTTTTTAAATTTTATATACCGACATTTTTTTGCAAAACAAAACAGAGGACAACAGTAAA CATTTCATTGTGGACCTATTGTCAAATGTTCCAAATGAATGACTTCGTCTCCCTTTTCATTAATTTCCTCTTCATCCACA TTATAGCAATGGGAATGGGTAAAAATTGCCAACTTCTGTAAATCTGTATCTTCGTTAAAGTATATTTGATTAAGATTTGG CCAGTTTAAGTTCTCTCGCAATTTCTACTCCCTGCAGATTACCATCCTTTTTTGTTTCTTTTTTTATCAACAAGCTGATG CTGTTTTCATTCTAGAGAGGAGTGATGTTTTGGGTTGGTTCTGTGTTCAAAGTCAAGCTTTAACTGTTGATATTCATGCT TAGGAAATAGGGAAGAGGAAAGATGAAATTGATTTTTTTATAACAAACATTAAATTACAAAAAAAATCATAAATGCAAAT TATATAAGACACAACGACAGAGGTTTTTTGTTAAGAGAAAAGTTGTAGGTTGTAAAATATTCACAAGTTACTCTATTTTG CACAATGTTGTTTGCGACGTGAACCAGAGCCAATCTGAGTGTATCGTGAAAATAAACTGTGTTCGAATATACGCCACTTG TATGTGTAAGTACTGTTAGAAGTCCCACATTGGCTAGAGATAGAGCATAGATAGCCTTTATAAGGGTAGTGCAAACCTCA ACTCTTGAGCTAGCTTTTGGGTTGAGTTAGGCCTCCCAATTTCTAATATGGTATCAGAGCCTATCCTAGATCCATTTGTT GTTTGTTGTGGAGACCTCCCATAATCGGGCCACCCGTTGTTGTTGATCCCATGTTCCAGGTTGTTCAGTCCTGGACGTGA GGGGGTGTGTTAGAAGTCCCACATTGGCTAGAGATAGAGCATAGATGGCCTTTATAAGGGTAGTGCAAACCTCAACTCTT GAGCTAGCTTTTGGGTTGAGTTAGGCCTCCCAATTTCTAATAAGTACATTGTATTGATTAGGTTGAATTGTATTGTTATG GTAATGGTAATTAGGATAACTGTAATAAGTGTAATTAGAACTTTCCTATCTATGTAATATGCTGTGTAATTGTGACACAT GGAATTCATCATATGTCGCTCTTCTCCCGCTGTCGACATGTTATCTAGAGCCTAAAAGAGTGTCAACCATGTATACCTCA TTAGCCGACTGCCTAACCATGTTCTTTTTCTTCTACAACAATCATCTTTCCCATTCCAGTTCGCCACTTTATCACTGCCA TGTCTTTCCGGCAGATTCCCATTGCAGTCTCTGCCATCTGCCACCAATCTCTATCACTATTTATTGAATAATAATAATGT AAAAGTACTCTAGGTGACTCTTTCTTTAGAAATAATCATCTCCACATTCTGTGAGAGAATGATTGCTACAATATTTACTT TTTTCACCTTTGTTTGTCTATGGAGTGTGTATAGGAGTTACTATAATACGGACCTGACAAAGTTCGTTAGTTTCTTGTTC CTCTAATTGCTTACTATAAGCTGCAACATGGAGGTGTTGGACAGCCAGTTTTCTATGTTGTAATAAGAACAATGAGAGGG AAGAAATAGGCAATTGAATAAATTGATGTGTCTGGGGAAGGTTCTAACATGTAAGTGGCCGTTGATGGTCTTTGATCTGG TACTTGAGTATGCTTTTGACCTTTAGAACTACGAATGGGAGAATACAGTTTTTGATGCTTGATTATGTTGCATACGTCAG CAAGGCTCAAATCAGTTGGTAATATAAATAAAATAACTGATGTAGTTAGCTAAAGAATTAGTTGAGAGGAGGATCTAGAG GATATAATTAGTAGGATGGAGCGAATAGTTAGGACTTGGTTTTGGAGAGAAATTTGGGTAGGGAGAGAACCAGGGTGTCT CAAATACCTAGAGTGTAATAGAACTTTAGTTTTGTTCTATATTCTGACCCAGTTCTAGTATACCACACATTACAGTTTCC ATGTACTATGTTCCTGTAGCTCTGATAATCTAGTCAGATGCTTATCCATTTGCTGTATATTTTATGGTGAGTCTCACTTT GGGTGATGAAAGGGCATTGGTACTTAAGCATGACCTCAATAAGGTACAATTTGGTTTTCGGGTATCACTTAGTGTTGGTT TGTGTCAAACAACCAATTATCCCAAAAGCTTAAGCTTTAGAAAAAGGCCACATAAATGGTTTTATATTATATTCTAACAC TCCCCCTCACACAAGAGCCCACTTGGGCTTGAAGCGTGGACAAAGTACTGACCCACCTACCATGTGCTGAAATTCAACTT TTTATTAAGAATTGGGGGTGGCAAGAATTGAACTCTAGACCACTTAATCATAGAGGCTCTGATACTATGTCAAGAACCAA TTATCTCAAAACCTTAAGCTATTGGGTAAAGGATTATTCTAACAGTTTGTTTCCATTTATAGTCACCCATGCTTGGTCTT CCTTAGTTTGAATTGGAAGAGCTATTAAGCTTGTTGGACCTTGTCTGGAACTTAATGATTTCAACCTAACTACTTTTTTA ATGATGAATATCAGTTTATATAGATAATTTTCTATCATACAAGAATCGTATTATGAACTCACTTTGCCCCAACACCATGC ATCCAAATATTATTTATTTAACCTTAGTTTCATGTTAATGGAGTCATACTCAACCTTCTGCTGTTCCTCCAGGTTTGTGA CCTTGTCTAGGCTAGCTATTATTTTGATTGGTTGCTTGCCCAATGCGGTTTAGACTTCAGAGGAGGATCTAGAGGGTATA ATTAATAGGAAGGGGCGAATAATTAGGACTTTGTTTTGGAGAGAAATTTGGGGAGGGAGAGAACCAGGGTATCTCAGATA CCTAGGGTGTAATAGAGAATCTATATCAATGAACACTGTTTCTTTCTATACTTTGACCCAGTTCTAGTATATTACACATT ATACTTTGCTACTTGCTATATATTTCATGGCTGGGTCTCACTTTGGGTTATGAAAGGGAGTCATACTTGCGCATGACCTC ATTAAGGTACAATTCGGTTTTCAGGAATCACTCGGTGATTCATGGATCAACCATGTTGGTTTCTGACCTCATTAAGCTAT ATTGTTGAATGTTATAAAGCTCCCACACTAAGATAATGAGTCTTTTTTATGTTTGAAGATCGTGCATTTATATATCAGCT TAGCTTCGTTAGTTCGAATTTCTCTCCCTTTGGAAGATACATCTTTACAGTTTTTCTTCACTGATGTGGTCCTGATTTTT ACTCCCCTAGTAAAATGTCATATTAGGACTTTTATGATAAAAGTTCTTTATATCTTTGATAGTCATCAAGTCTTTTGCTT TTATGAATTATGTGTTGTGCTTATATGTAAGAATGAACAGCTGTCTCAAATATTCTTGGGCTACTATTTGTTGCACCTAG TCTCTTTTCTTATTTGGTTCTCTGAAGGTTTTCTTTGCCTCATTCTTTCAGGCTGAGAGTGCAATTGCTGCTCTGAGTTG CAGTGGTGTGATATTGGGTTCGCTGCCTATAAGGTTGGATCAACTATTTTTCCTTTGATTTTATAACTTTCCTAAACTTC AGCCAGTCTCTAAATTTTGTGTCAACCAATTTCATATTTGGTATGCAGGGTAAGTCCATCAAAGACACCAGTCCGGTCTC GCTCTCCTCGTTCTCCAATGCACTGAATCATCCTTCCATGTATGTTTCTGGGGTTGATTGCTGCTGAGATATATTTACAT ATATACATACATAGAAACAGATACTGTTGCCCTTTAGTCTTGCAGTATGGTATCTTTGTTTCTCGTTGGGATTATGAGTT ATGTGTAGAGTTGGATGACATTTTGAGGATCTTGAAGGCTTAATTTATGATGGGTTGGTCTTGCATAACCAGAGGATTTT ATGGTTGGATGTTTATAACCTGTGGAGTTTATAGTTTATTTAAAGAACCATATTACAAAAGTAGTTTCTGTTTTTAAGTT GAAAACCACATTTGGTGCGAATTCTTGTGGCCCCAACGGGAAATGAGCTCAGCCCCTTCGTCGGCATTCAGTTGGGGACA GTTGAAAAACAAACGTGATATTTTACTGTCTGCAATTCTGTAATTGATACTTATTTTAATCTTTCTGGTAAGCCATATGA AGTAGTGGCTGTGCCATCTACTGCTTGTCACCATTGATCAACTGACCACTTCAGCGTTCGCAGGGTAATATCAGAAGCTA CACTTTGTAGCTTTTTCTTAGAAGTGATTATGAGGTTCTCAACCATATAGCCAAAAACTTCAAACTTGGTTATTCTATGT TCTGTCTACCCTGGTTTTTTATTTTTTATTTTGAGCCACAATTGGCTGCTAGTATCATGTTTCACTGGCCATGTTTTTTT CCCACCAAACCCTTTGTCCAACAGCAAATCATTGGTTGGTAGAGACCTGGGCCTGTATGATATAAACCAACAGGCTCCTA GATTTCGTGTCGGGAGGAAGCTACCTTATTTTGCTTAGAATGATTCTGAGTCAAACATGTCATCTAATTCCATAATATGT TTCAACATCGCCCAATGTTACAAATCTCTGATCGATTTCTTGTTTCTTAATACTTACCTTTGAGAGTGCAATTCACCTAC CTATTGTCCATATCTGTATTACCGAGTCTTTACCACTTGAAGTTTCTATCTAGTTATTTAGCCCAAATATCTTAGAATTT TGGCATTCAAGTTGCCTCAATTATTATTATTATTATTATTTTTTTGAAAGAAGTTGCCTTAATTAAGTGACAATTTTTTG TATTTGAATTGGATAATGCAACCGAGTATATACCTTCATTATAGTCCCTTAATAGATTAGTCTTCTATAGATGCTGGTTT TCAAATTAGTCTTTCCAAAAAGTTCACTACACTAATCATTTGAAGATATATAATTTTCAAAAACTTTGTCCATTCAAAAC TTGAAATTATGAATTTGTTGATAATTTTGTACTCTGAAGGGATTAATTTAATGGCGGCATC
CDS sequence (LotjaGi1g1v0295600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGTTGCTGAGAATGCTGGAGCCAAAATCGGTTCTTCCGGTCAGAATTTGGACAACAACAACACTGTTGTGTCAGC TGAGGACTCAAGTGAGGTGGAGAAATCGAAGACTAGGACCGATCAGAATCTGAGCAACGGTGGTTTCAACCATGAACATC ATCCTGGGAACATAGCAGTTCCTAATGGCAACTACAGCTATAATGCTCAAGTGGGTCAGATGCAAGCAAATGGTGTCCAG AACCAGCAGCTTGTGATGAACAATGATGGGTATGGGGAGAATGGGGATGAGAGTTTCAAGCGTGACATGAGGGATTTGGC TGAGCTGTTGTCAAAGTTGAACCCCATGGCTGAGGAATTTGTGCCCCCTTCACTGACTAATAGCCATGGCTATTTAGCTG GACCTAATGCTGGGTTTGGTTATCCTAACAATTTTATTCTGCAAAATGATTTTGGACAGACTAATAGAAGGAGGAAGAAT GTCTATAATTCTGGGAAGAGAAGAATTTTTCATAAGATAGAAATGGAGAAAAGGGATGAGATGATTCGGAGGACTGTTTA CGTGTCTGACATTGATCAACTGGTCACTGAAGAGCAGCTGGCAGCTCTATTTCTTAACTGTGGCCAGGTGGTTGATTGCC GTGTATGTGGGGATCCTAATTCAATTCTTCGGTTCGCCTTTGTTGAGTTTACAGATGAAGAAGGTGCAAGGACTGCTTTG AACCTGTCTGGAACTATGCTTGGATACTACCCACTGAGAGTGCTGCCTTCGAAAACTGCCATTGCACCTGTTAATCCAAC TTTTTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTACTGCACAAATATTGACAAGAAGCTTACTC AATCTGATGTCAAAAACTTCTTTGAATCTATTTGTGGAGAGGTTCAACGGTTGAGGCTTCTTGGGGATCACAATCATTCA ACTCGAATTGCTTTTGTTGAGTTCAAAGTGGCTGAGAGTGCAATTGCTGCTCTGAGTTGCAGTGGTGTGATATTGGGTTC GCTGCCTATAAGGGTAAGTCCATCAAAGACACCAGTCCGGTCTCGCTCTCCTCGTTCTCCAATGCACTGA
Protein sequence (LotjaGi1g1v0295600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVAENAGAKIGSSGQNLDNNNTVVSAEDSSEVEKSKTRTDQNLSNGGFNHEHHPGNIAVPNGNYSYNAQVGQMQANGVQ NQQLVMNNDGYGENGDESFKRDMRDLAELLSKLNPMAEEFVPPSLTNSHGYLAGPNAGFGYPNNFILQNDFGQTNRRRKN VYNSGKRRIFHKIEMEKRDEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFVEFTDEEGARTAL NLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHS TRIAFVEFKVAESAIAALSCSGVILGSLPIRVSPSKTPVRSRSPRSPMH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 56 | 56 | - | – | |
| PANTHER | 6 | 368 | 363 | 1.3E-191 | – | |
| PANTHER | 6 | 368 | 363 | 1.3E-191 | – | |
| MobiDBLite | 10 | 29 | 20 | - | – | |
| Pfam | 111 | 124 | 14 | 3.1E-5 | ||
| Gene3D | 172 | 261 | 90 | 9.6E-17 | ||
| SUPERFAMILY | 179 | 260 | 82 | 3.36E-18 | ||
| CDD | 182 | 261 | 80 | 2.3922E-56 | ||
| ProSiteProfiles | 184 | 259 | 76 | 13.686 | ||
| SMART | 185 | 255 | 71 | 9.8E-15 | ||
| Pfam | 186 | 250 | 65 | 2.0E-12 | ||
| Gene3D | 267 | 364 | 98 | 7.0E-15 | ||
| SUPERFAMILY | 272 | 364 | 93 | 4.75E-17 | ||
| CDD | 277 | 358 | 82 | 3.07199E-57 | ||
| ProSiteProfiles | 281 | 357 | 77 | 12.594 | ||
| SMART | 282 | 353 | 72 | 3.0E-13 | ||
| Pfam | 283 | 350 | 68 | 2.9E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0295600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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