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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0297600 |
Transcript ID | LotjaGi1g1v0297600.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; TAIR: AT5G53730.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; Swiss-Prot: sp|Q9SRN0|NHL1_ARATH NDR1/HIN1-like protein 1; TrEMBL-Plants: tr|I3S5T1|I3S5T1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0297600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:72097043..72100710) extracted from Lotus japonicus Gifu genome v1.2.
CAACTTTTTAGGTTATGTCTCGATGCTTGTTGACACCGGTGCAAATGGATGTTAGCATTCATTTCGAGACAAAAAGTGAA AGGAACTCTTTTTATGAATTGAGATCAAAGTCCGCACGCATTACACTTAATTGTTATCCAAACACACTATTAAATCTTGC CTTCCAACACAACTTCAAGATATACATGTTTACTTGGACAAACAATCTTGGTAATGTTCCTTGAAGAATTAGAACACTAC CAACTTAGTGCTAATTCAAGTAAGACCATTCATTGAAAACTTGAATGTTAGGTTGTGTTCAACTCAATCTACATATTAAT GGAGTGTTTGGCTAGTCTCTGTTCAATTTTCATTTAAAATGCTCAAACAAAGTCTTGTCTGCAATAGATTTTTTCAGTTT CAGTAAGCTTTTGTGCACCAAAAAGAAAAAGTTGGATTGGGGCCAAATTTGGTTGTTAGTGTTATCTGGCAGTCTCAATC CTCTCACCACACAAATGTTTGAAAGCGACCAAAGCATATTACGGCCCAAAGAAAGAGAGTACTGTGAAAACAACCATAAA GACATGTTACATTAACATGGCTAAGTTAGATTCTAAGCTTTCTACAGTACATGTGTGAACTTTTTCATGTTAACATGAGC CAATTTTTTTTTTTTCAGGGGAAGAGGCAGCTTGTCCCACTGAAACTTTGCTCCTGAATTGCTTGCAAAAGGAGATAACA TTTTGTGAAAGTGGAGAGTGGTGTAGGGTCATTTGGTTCATATGCACCTAATTACTTGCTAATTGCTATAATTAATAGCA TGTTTTGATCTGCTTTAATTTACTCGGAATTAATTCAGAAACTTTAAAGATACTCAGAGATAGCATGTTTGGAAACTAAT CAAATATCACATTTATGGAGAATCAATTTTTAAATACCGAATTTGGAAACTCATTGAGAAACTATGATGAAAGGCAAAAT TTTGGTGGAAAGAAGGTATTTCCCTTAGCTTTTGTAAAACTAGAGCTGATTCTAGCTATGCTGAAACAAAACTAAACATG CTACAAATGCATGTTTGAACTCATACTGAAATTTTGCAGAATCAATTCTGCTCACACAAAAGCAACTGGGAGTAGTTTTT CAGATAATCAATTCTCTTTCTAACGTGAAAATCTACCAGAATCAACTATGACATACCTAATGAATATACAAACATGCAAA GAAGCTTCTCCACATATTTGATTCTAATTTTAGATAAACTTCCAAACATGTATTCAATGAATTCAGTGCTCCTCTAAATT GTCACTCAACATTCCAACTATTTTGACAAGTTATGAGGACAACTTTCATGTTTAATATGAAATGAAAAATGATTGGTGAA CATACCATTTCTGCTGATACCCTTCAAACATACGTCTTTGCAGCGGCTTTGTAGCTTTACAAAATGTTGTGAATGTTAAA AGTTGAAACTGCCACAAAGATATGTGTGAAGGGTGAAAACATTTCAGTATATAACTTAATTTTTTATCCATATTAAGAAT ACTAGTAACGCGTGTGGATCTCTGGCATGTTAGGATTTCCCTATCAAGCATTTCTCCAGAAGTTTACCACTTTAATTTTC TTATAATTATATACTAATCACCATGAGGAGGAGCTTATAGATAGCAGTCAAAAGCACCAAAATAATTGTTGCTTTTTGCT CTCTTTATAACCCACCCAAACCCCCTCTTCCTTAACCTTGTAAACAATTAACATCCCTCCTTTCAAGTTTCAACTCTCTC TCTCTCTTGGAAATGTCTCAAATCACAATAAAATCTCCAAAACACTGTGCAACAAAGCAAGGATTCAAAATTGAAAGAAA CTACAAGAAGCTCTATTTTGCTTTCTCAGCATCTTTCACCACAATCCTACTACTCTTACTTCTTATCTGGTTCATTCTCC ACCCTTCAAAGCCTCAATTCTCCCTCAAAGAAGTTGATATCTACCAATTTAACCTCTCAGGACCAATGCTTAACTCTTCA ATCCAACTCACTCTCTTATCCAAGAATCCAAACCAGAAAGTTAGCATCTACTATGATGAGTTTCAAGTTTATGCAACCTA CAAGGGACAAAGGATAACAGGTGATTCCTCTGTGCCTCCATTCTACCAAGGGAATGAAGAGAGTAATCTCTTAACAGCAT CTTTGATTGGGAATGGCTTACCAGTGGCACCATCTCTTGGTTATGAAGTAGGCCGTGATCAAATTAATGGAAGACTAGTT TTGAATCTCAGAGTTATTGGGAAGCTTCGTTGGAAGATTGGAACTTGGGTCTCTGGACATTACAGGTTCAATGTTAATTG TGTTTCTGTCATGGCCTTTGGACCTTCTATGCTTGGTGCTCCTCTGATTTCAGCACAAGGGGCTCAGTGTTCTACCACAG TTTAAACAGATAATAATGTGATATAGTATTGATATCTTAGAGCTTTTCAAGTTTTCTTTTTTTAATTTCAGATAATGATT GGCTTTGTGTCAAGAAAGTGTTTTGCAGTCACTAAGTGATTTTGTAAATAAAATATATGAATGATAGGACCAAAACTTGT TACAACTTGTGAGTGATAATGAAAAAGGATGCATATTACTATATTAGATTGTTAATCTTATCTCTTTACTTTCAGCTTCA TCTCCTTCTCTCTCTCTATTCTCTCTTTACTCCACTATCTTTTTATCTAAATTGATTTTGCTCTGCATATGATGATAGAG TGCATGGTGAAATGGGGTAAAATGAAAAGTAGCAGATTTAATTTGATGGGTTTCATGGTCTCTCTCTGGTATCTTTTGTG AGTGGATGCATGAGTAGATATTGGGATACCTTTGTTTCTTTGGTTATTTTGTGGATATGAAGGAAAAAAACAAACTTTGA TTGAAGAATATGAAGAAGAGATTCCAAGAAGAGAGATAGTTTGAAGGTAAAATGAGGAAAATTAGTAGCTTTTGTAGGAG AATCTGTAGATTTTACATGTCAATTCTTTGCTTTAAAGATTCATATAAGGTATACTTTAAGCAAACTTTAGGTAACCATG AATCAGCTTACATTTTTCTCTTTTATTTTAGCAATACCTGGCCAAGCATGTCTCAAACGAATATACCATGGGATGCTAAC AGTTAGACCAGTTTCTCTTTTGATTTTTAGCATTTTATCTAAAGAAGCACAGAGTGTTGATTACAAAGAGCTACTTCATC AGTGGCATCATTTTCAGATTCCTAGTTTCTAACATATGCTGAAGTTGCCAATTGAAGAATCCGTACTTAACTCACCCCTT AACCTAAACTCTCACATCCCCTGTCTCATCTTTCCTTTATCATTCAAGGGTTATGATTCATAGACCATCCTCACTATAAA CATGCCTCAAACACCCAATATTTTTCCTCTATCTCCCACTTCTTTTCACATCATATTATATATCACATTTATTACTTATC TTTTCTCTTCGTATGTATCTACATCCTTTAGATGTTTACCCATCATTTTCCATCATTCAATTTTCTCCTTTTTCAAATGC TGGAATCCCCTCTCAACCTATTATAAAAGATGAGAAAGAATGAAGAACAAATTGTTTTGATATCCTTGTGATTTCCCAAC ACCCTCTAATTGCAGTTTAATATGCATGTAGCATTGCTACAACCACCATTTAGTAGTTACTAGCATAA
CDS sequence (LotjaGi1g1v0297600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCAAATCACAATAAAATCTCCAAAACACTGTGCAACAAAGCAAGGATTCAAAATTGAAAGAAACTACAAGAAGCT CTATTTTGCTTTCTCAGCATCTTTCACCACAATCCTACTACTCTTACTTCTTATCTGGTTCATTCTCCACCCTTCAAAGC CTCAATTCTCCCTCAAAGAAGTTGATATCTACCAATTTAACCTCTCAGGACCAATGCTTAACTCTTCAATCCAACTCACT CTCTTATCCAAGAATCCAAACCAGAAAGTTAGCATCTACTATGATGAGTTTCAAGTTTATGCAACCTACAAGGGACAAAG GATAACAGGTGATTCCTCTGTGCCTCCATTCTACCAAGGGAATGAAGAGAGTAATCTCTTAACAGCATCTTTGATTGGGA ATGGCTTACCAGTGGCACCATCTCTTGGTTATGAAGTAGGCCGTGATCAAATTAATGGAAGACTAGTTTTGAATCTCAGA GTTATTGGGAAGCTTCGTTGGAAGATTGGAACTTGGGTCTCTGGACATTACAGGTTCAATGTTAATTGTGTTTCTGTCAT GGCCTTTGGACCTTCTATGCTTGGTGCTCCTCTGATTTCAGCACAAGGGGCTCAGTGTTCTACCACAGTTTAA
Protein sequence (LotjaGi1g1v0297600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSQITIKSPKHCATKQGFKIERNYKKLYFAFSASFTTILLLLLLIWFILHPSKPQFSLKEVDIYQFNLSGPMLNSSIQLT LLSKNPNQKVSIYYDEFQVYATYKGQRITGDSSVPPFYQGNEESNLLTASLIGNGLPVAPSLGYEVGRDQINGRLVLNLR VIGKLRWKIGTWVSGHYRFNVNCVSVMAFGPSMLGAPLISAQGAQCSTTV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 210 | 210 | 9.5E-92 | – | |
Phobius | 1 | 26 | 26 | - | – | |
PANTHER | 1 | 210 | 210 | 9.5E-92 | – | |
Phobius | 27 | 49 | 23 | - | – | |
TMHMM | 27 | 49 | 23 | - | – | |
Phobius | 50 | 210 | 161 | - | – | |
Pfam | 81 | 183 | 103 | 2.9E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0297600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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