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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0297700 |
| Transcript ID | LotjaGi1g1v0297700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7LIU0|K7LIU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0297700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:72123023..72125485) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAAAATAGAAGATAAAGCAGATTTGAAATCTTTTGGCTGAAAAAAATTTAAAAAATAGCAACAAAACAAACCCTGA AACCCTTAAACCCTGATATCCAATGTGAAGTAACAAACCAAAACCCTCTTCTTCTACTACGGACATGGAGAACCAGAACG AGAAGAACCTCACTCTACCTCACGAGTCTCCATCTGCTACTGCTGAACCAAGCGACATGGAGAACGAGAACATGATGAAC AAGAAGAACCTCACCCTACCTCCCGAGGTGATCGTCGAAATTCTGCTTCGCCTGCCGGTAAGATCTCTACGGCGTTTTAA AAAGGTTTCTCCGTCATGGTCCTCTATTATTTCCGATCCCCAATTCAAGAAATCCCATTTTGACCTAAATGCTGCACCCA CTGATCGTCTTCTTCTTCGATTTCTCGATGAGGATAGAGACATAGTTCAATCCTTTGATCTAGCTTCATCGCTTGATGAC CGTTCTGCTATCAAAACCCTCAATGTCCCACCTCCATCCATGTTGTGTAATCACAACCCTTTATATTTCTTGGGTTCTTG CAGGGGTTTTATGCTTTTAGCCTATGAACATACTGGTGATCTCATTGTTTGGAATCCAACAACCGGTTTCGATCAACAAA TTCTGGATATAGACCATGAGTTTGTGTTTAAGTTTCTATGTGGTTTTGGGTATGACAGCTCAACTGATGACTATTTTGTA GTTGTTATAACCCTGTATCGATCTTTCATCCCTGAAACTGAAATGCATTGTTTTTCTTTGAAAAACGAATCATGTTGTGA CGTTAAGTATGGTAATGTTCATTATATGGATTATGGACATGATTCTACATCTGGGGTGTTCTTGAATGACTCTCTTCATT GGCTGGTCATTTATATGGAGACAAGGCTTCCTGTAGTTATTGGCTTTGATCTGGGAGAAAAGAGTTTGTCGGAGATTCCT CTGTCGTCTGAATTAGCAGGGGAATTGGCACGGAAAGTGTATTATTTGAGGGTATTGGGAGGATGTCTCAGTCTGTGTTC CTCGGGTGGAGGTGGTACGCGTGATAGTTGTGAGATATGGGTCATGAAAAATTATAAAGTGCAGGCTTCTTGGACCAAGG CTTTTGTCATAACTTCTTGTCACATTCCTTGTAGACACTTTTATCCAGTATGTTTCACTGAAGGTGGTGGAGTTGTTGGA ACTGATGGCAGTGGAACACTGATGAAATTTAGTTCCAAGGGAAAACTGCTTGAGCATCGCAAATATGATCGGGAGTACAA AAAAGTTACAAAATATTTTGAGATGTATAGAGAGAGTCTGCTGTTATTCCCCGGTGAAGAACGACCCATCCTTTGTGCAA CATCACTCCCTGGTGACTTTAAGGAAGCAACTAAAGAGGAGAAAGAGAAAGCAACATCACTCCCGGGTGACTTTAAGGAG GCAACTAAAGAGGAAGAGAAAGCAATTGAAGATGAGGAAGCAAGTGGAGATGAGTATGCAAGTGGAGATGAGGAAGAGGA AGCAACTGAAGATTCGAATTCATCTGAAGGTGACTATCCAACTGAAGATGAGGAAGAGGAAGCAACTGAAGATTCGAATG CATCTGAAGGTGACTATCCAACTGAAGATGAGGAAGATGCAACTGAAGAGGAGGAAGAGGGGGAAACTGATGATGATGAT GATGATGATGATAGTGATAGTGATGATTATGATAGTGATGATAATATAATGATGGAGAAGATGAAGATGACCTACTCTAA GAAAAAATAGTATGTAATATTCTCCAACCCTTGCAAGATACATGAAAATTGTACAAGGAAAAATGTTTGCTCTATCACTT ATGTTATTCTGTTACATTTGATCATTGGATTTTAAAGATAAAATCTTATAAAATATCTGTATGTTGATATTTACTATCAG CTCATCTTTCTTGCAAGCCACAAAGTAAGTAAGAGTGTTTTATACAATTTCCTGAATGTCCTAACTTTTTTTCAAATTAT GATACAGCTAGCCAGAAGAGACTGTGTATATAGGATAAGATATTACATCTATGATAACCTTGTTTCAAAGCATAAATAGT GCATGCATTTTGTTTCCCTTACCCTCTTTTACATGGTTTTCAGATTAACACGTAGGTGCCTTTGTTCGATGTTTTGACTT GAAGTTGTGGAGAAATACTGGTCTTAAAGATGGGATGGAGCGAAAGGTTTTGAAACTAGTCAACTTGTGTTATGAATTGA TCTTGTGTGTAATTGATTTAACCACTAAGTCACATTGATCTTTTGTTTGATAGGGTTTTTTTGTCGTACTCTCATGATAT CCTTAATGATACTATGTAGTTTGGATGTCTATTGCAAGGACAGTGCAATGGATGAAAAAAGTTAGAGATTCAGCTCGACT TGCTAATGTCTCTGTTCATATTTTTTCTTCCTATATCAAGATTATATCTACTACTAAATGGGA
CDS sequence (LotjaGi1g1v0297700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAACCAGAACGAGAAGAACCTCACTCTACCTCACGAGTCTCCATCTGCTACTGCTGAACCAAGCGACATGGAGAA CGAGAACATGATGAACAAGAAGAACCTCACCCTACCTCCCGAGGTGATCGTCGAAATTCTGCTTCGCCTGCCGGTAAGAT CTCTACGGCGTTTTAAAAAGGTTTCTCCGTCATGGTCCTCTATTATTTCCGATCCCCAATTCAAGAAATCCCATTTTGAC CTAAATGCTGCACCCACTGATCGTCTTCTTCTTCGATTTCTCGATGAGGATAGAGACATAGTTCAATCCTTTGATCTAGC TTCATCGCTTGATGACCGTTCTGCTATCAAAACCCTCAATGTCCCACCTCCATCCATGTTGTGTAATCACAACCCTTTAT ATTTCTTGGGTTCTTGCAGGGGTTTTATGCTTTTAGCCTATGAACATACTGGTGATCTCATTGTTTGGAATCCAACAACC GGTTTCGATCAACAAATTCTGGATATAGACCATGAGTTTGTGTTTAAGTTTCTATGTGGTTTTGGGTATGACAGCTCAAC TGATGACTATTTTGTAGTTGTTATAACCCTGTATCGATCTTTCATCCCTGAAACTGAAATGCATTGTTTTTCTTTGAAAA ACGAATCATGTTGTGACGTTAAGTATGGTAATGTTCATTATATGGATTATGGACATGATTCTACATCTGGGGTGTTCTTG AATGACTCTCTTCATTGGCTGGTCATTTATATGGAGACAAGGCTTCCTGTAGTTATTGGCTTTGATCTGGGAGAAAAGAG TTTGTCGGAGATTCCTCTGTCGTCTGAATTAGCAGGGGAATTGGCACGGAAAGTGTATTATTTGAGGGTATTGGGAGGAT GTCTCAGTCTGTGTTCCTCGGGTGGAGGTGGTACGCGTGATAGTTGTGAGATATGGGTCATGAAAAATTATAAAGTGCAG GCTTCTTGGACCAAGGCTTTTGTCATAACTTCTTGTCACATTCCTTGTAGACACTTTTATCCAGTATGTTTCACTGAAGG TGGTGGAGTTGTTGGAACTGATGGCAGTGGAACACTGATGAAATTTAGTTCCAAGGGAAAACTGCTTGAGCATCGCAAAT ATGATCGGGAGTACAAAAAAGTTACAAAATATTTTGAGATGTATAGAGAGAGTCTGCTGTTATTCCCCGGTGAAGAACGA CCCATCCTTTGTGCAACATCACTCCCTGGTGACTTTAAGGAAGCAACTAAAGAGGAGAAAGAGAAAGCAACATCACTCCC GGGTGACTTTAAGGAGGCAACTAAAGAGGAAGAGAAAGCAATTGAAGATGAGGAAGCAAGTGGAGATGAGTATGCAAGTG GAGATGAGGAAGAGGAAGCAACTGAAGATTCGAATTCATCTGAAGGTGACTATCCAACTGAAGATGAGGAAGATGCAACT GAAGAGGAGGAAGAGGGGGAAACTGATGATGATGATGATGATGATGATAGTGATAGTGATGATTATGATAGTGATGATAA TATAATGATGGAGAAGATGAAGATGACCTACTCTAAGAAAAAATAG
Protein sequence (LotjaGi1g1v0297700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENQNEKNLTLPHESPSATAEPSDMENENMMNKKNLTLPPEVIVEILLRLPVRSLRRFKKVSPSWSSIISDPQFKKSHFD LNAAPTDRLLLRFLDEDRDIVQSFDLASSLDDRSAIKTLNVPPPSMLCNHNPLYFLGSCRGFMLLAYEHTGDLIVWNPTT GFDQQILDIDHEFVFKFLCGFGYDSSTDDYFVVVITLYRSFIPETEMHCFSLKNESCCDVKYGNVHYMDYGHDSTSGVFL NDSLHWLVIYMETRLPVVIGFDLGEKSLSEIPLSSELAGELARKVYYLRVLGGCLSLCSSGGGGTRDSCEIWVMKNYKVQ ASWTKAFVITSCHIPCRHFYPVCFTEGGGVVGTDGSGTLMKFSSKGKLLEHRKYDREYKKVTKYFEMYRESLLLFPGEER PILCATSLPGDFKEATKEEKEKATSLPGDFKEATKEEEKAIEDEEASGDEYASGDEEEEATEDSNSSEGDYPTEDEEDAT EEEEEGETDDDDDDDDSDSDDYDSDDNIMMEKMKMTYSKKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 27 | 27 | - | – | |
| Gene3D | 25 | 117 | 93 | 7.1E-7 | – | |
| PANTHER | 31 | 391 | 361 | 1.4E-80 | – | |
| PANTHER | 31 | 391 | 361 | 1.4E-80 | – | |
| ProSiteProfiles | 32 | 77 | 46 | 9.497 | ||
| SUPERFAMILY | 37 | 158 | 122 | 1.83E-13 | ||
| Pfam | 38 | 77 | 40 | 1.9E-7 | ||
| SMART | 38 | 78 | 41 | 4.9E-8 | ||
| TIGRFAM | 138 | 350 | 213 | 1.2E-20 | ||
| MobiDBLite | 415 | 441 | 27 | - | – | |
| MobiDBLite | 415 | 521 | 107 | - | – | |
| MobiDBLite | 442 | 505 | 64 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0297700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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