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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0297800 |
| Transcript ID | LotjaGi1g1v0297800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7L8S8|K7L8S8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0297800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:72175245..72178502) extracted from Lotus japonicus Gifu genome v1.2.
CAACGTACTGTCAGCCACACCAAGAGTCAAAACCAAAGCATCCTCTCCACACTAGAGATGGCCCCAGCGGGAGAAAAGAA AAAGCTGGCCTGCAATTTACAACATGGACAAACACTCCAAGGGGCAAGACTTCCATTCATACAGAGTTGCAAAATCTACT CCATCGTGCCTTGAGCCAATGCATAAATAAATACATTTGAAATCTTTAAACCCCAATATCCATTCCAATGCGAAGTAAGA AAACAAAAAACCCTTCTCTTCTCGACATGGAGAACGAGAACGAGAAGAACCTCAGTCTACCTACCGAGTTGATCATTGAA ATTCTGCTTCGGCTACCGGTGAGATCTTTACTGCGCTTTAGAAGGGTTTGTACGTCATGGTCCTCCCTCATTTCTGATCC CCAATTCGCAGAATCCCATTTTGACTTGAATGCTGCACCCACTGATCGTCTTCTTCTTCGATTTATCAATGAGAATAGGG CTAGAGTTCAATCCTTTGATCTAGCTTCATCACTTCGCGACCGTTCTGCTGTCAAAACCCTCAATTTCCCCTCTCCATCC ATGTCGTGTGATCACAACCCTATACATTTCTTAGGTTCTTGCAGGGGGTTTATGCTTTTAGCCTATGAACGTACTTCTGA TTTCATTGTGTGGAATCCAACAACAGGTTTCGATAAACAAATTCAACATTTTGAAAGTGACTTCATGTCTGCCTCTCTAC ATGGTTTTGGGTATGACAAATCAACAGATGATTATTTTGTTGTTCTTATAAGACTACTGATTAGAGCTAACCAAGCTGAA ATTCAGGCTTTTTCTTTGAAATCCGAATCATGGCATGTCACTAAGTCTGTTAATAGTCAATATGTGGATCATGGTGATGA TTTCAGCTCCGGGGTATTCTTGAATGATTCTCTTCATTGGCTGGTTGCTCCTACCGCTAGGGATACAAATGCTTATGTAG TTGCTGCCTTTGATTTGGTAGAAAAGAGTTTATCAGAGATTGAGATTCCTCTTTCACCTAATTTAGCAGCATTTGTGACA GGGAAAGTGTATCATTTGAGGGTTTTGGGAGAATGCCTCAGTGTGTGTTCCTCGGGTGGACATACGTATGGTAGGGCTGA TATATGGGTCATGAAAAAATATAAAGTGCAGGCTTCTTGGACCAAAACTTTTGTCATATCTTCTTGTCACATTCCTTGCA GACACTTTTATCCAGTATGTTTCGTTGAAGGTGGGGGAGTTGTTGGAACTAATGGTCGTGGAACATTGATGAAATTTAGT TCCAAGGGAGAACTGCTTGAGCATCACAAATATGATCGGGAGTACAAAAAGGTTTTAAAATATTTTGAGATGTATAGAGA GAGTCTGCTGTTATTCCCTGGTGAACAACGACCCATCCTTTGTGCAACATCACTCCCTGGTGACTTTAAGGAAGCAACTG AAGAGGATGAAGAGAAAGCATTTGAAGATGAAGAAGCAATTGAAGATGAGTATGCAAGTGGAGATGAGGAAGATGATGCA ACGGATGATTCAAATGCATCTGAAGGTGGGTATCCAACTGAAGATGAGGAAGATGCAACTGAAGATGAGGAAGAGGGAGA AACTGAAAATGATGATGATGATGATGACGATGATGGTGATGATAATGAGGATGAAGATGAAGATGACCTACTGTAACTGT TCAAGATTCAAGAAAAAATAGTATGTAATATTCTCCAACCCTTGTTACCTTTTTGTTCATATTCTTTTGCGTTACAAAAC ATGAAAAGCTTAATGCAGAAGGCATGATACATGAAAATGATACCTTACACATATACCATACTCTCTCTTTCTTCCTACCT AATAATGTTTTCTTTATTTTTTCAAAAAACACTGATACAAGTTAAGATCAGGTTTGGTGGTGGATTTAATTCACTCATGA GTAGATATCTAGCTCACGTAAGAAAGTAAAGGCTGTACAAGAAAAAATGTTTGCTCTATCACAGTGTCACTTATGTTTTT ATGTTACATTTGACAATTTGATTTTAAAGATAAAATCTTATCAAATATCTGTATGTTGACAATTAAAATCATCTCATCTT TCTTGCAAGCCACAAAGTAAGCAAGAATGCTTTATACAATTTCCTCAATGTCCTAACTTTTCTTCAAATTACAACACTGC TAGCCAAAAGAGACTGTCATATATAGGATAAGATATTACATATGAATATATGATAACTCGTTTCAATGCAGAAATAGTGC ATGTCTTAGCATTGGTTTCAGTCAGATTGGGTTTAGAGCACACATTAAAATTTAATTAGTTTTTGAAGTAGGACTTTAAC TTTTATCAAATCTTAGTTGGAGTAAGTAGATACTATTTAGAATCATTTTTTTATTTTCCACTTAATATTGTAATTGCATT TGCATTTTGTTTCCCTTACCCTCTTTTACATGTTTTTCAGATTAACACTTGGTGCCTTTGTTCGATGTTTTGACTTGAAG TTGTGGAGATACTGTGGTCTTAACCATATAGTACCTTAAAGATGGGATGGAGCGAAAGGTTTTGAAACTAGTCAAGTTGT GTTATGAATTGAACTTGCGTGTAATTGATTTAAGTATTTAACCACTTTGTCACATTGATCTATTGTTTGATAAGGTTTTT TTTGGCGTTCTTTCATGATATCCCTTATGATACTAAGTAGTTTGGATGTCTATTGTAAGGACGGTGCAATGGATTAAAAA GAATTAGAGATTCAACTTGACTTGCTAATGTCTCTATTCATATTTTTTTCTTCCTTTATCAAGATTATATTTATTATTAA ATGGGAAAAAAGGTGTAGTTTTCACTTTCAAGATTATTTTTAGCTGCATAATCTTGTAAATCACATAGATATATCTTCAA TCTTACAGGCTACAGCAACTTCCGTTTTCTTTTATGGTTAACAAATTATGTATATATGGACTTGGTATCAGAAAAACTAT GAATAGAAGTCAACATATGGGATTGCTATATGGCTATGCTTTGGGTTGTTGCATTTATTTTCCACTCTACGCTTTAGGTT TGAGATAATTTTTAAAGTTTGAAATATTGTATAGTGCATCAAATTGGTGGCAATGGACAGAGTCTATAGTAGATTTTTTC ACTTAAGTTTATTGTTGTTGACAGCCTATGGTTTGAAGACTTTGTATTTGCTACTTCCCCCTTCTTTCAAGATCCTTCAT CCCATGTCAAAAAGAAACTGTTTATTTTGAGGGCTGTGTTTCAGAAATTAGGAGTTAG
CDS sequence (LotjaGi1g1v0297800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGAAGTAAGAAAACAAAAAACCCTTCTCTTCTCGACATGGAGAACGAGAACGAGAAGAACCTCAGTCTACCTACCGA GTTGATCATTGAAATTCTGCTTCGGCTACCGGTGAGATCTTTACTGCGCTTTAGAAGGGTTTGTACGTCATGGTCCTCCC TCATTTCTGATCCCCAATTCGCAGAATCCCATTTTGACTTGAATGCTGCACCCACTGATCGTCTTCTTCTTCGATTTATC AATGAGAATAGGGCTAGAGTTCAATCCTTTGATCTAGCTTCATCACTTCGCGACCGTTCTGCTGTCAAAACCCTCAATTT CCCCTCTCCATCCATGTCGTGTGATCACAACCCTATACATTTCTTAGGTTCTTGCAGGGGGTTTATGCTTTTAGCCTATG AACGTACTTCTGATTTCATTGTGTGGAATCCAACAACAGGTTTCGATAAACAAATTCAACATTTTGAAAGTGACTTCATG TCTGCCTCTCTACATGGTTTTGGGTATGACAAATCAACAGATGATTATTTTGTTGTTCTTATAAGACTACTGATTAGAGC TAACCAAGCTGAAATTCAGGCTTTTTCTTTGAAATCCGAATCATGGCATGTCACTAAGTCTGTTAATAGTCAATATGTGG ATCATGGTGATGATTTCAGCTCCGGGGTATTCTTGAATGATTCTCTTCATTGGCTGGTTGCTCCTACCGCTAGGGATACA AATGCTTATGTAGTTGCTGCCTTTGATTTGGTAGAAAAGAGTTTATCAGAGATTGAGATTCCTCTTTCACCTAATTTAGC AGCATTTGTGACAGGGAAAGTGTATCATTTGAGGGTTTTGGGAGAATGCCTCAGTGTGTGTTCCTCGGGTGGACATACGT ATGGTAGGGCTGATATATGGGTCATGAAAAAATATAAAGTGCAGGCTTCTTGGACCAAAACTTTTGTCATATCTTCTTGT CACATTCCTTGCAGACACTTTTATCCAGTATGTTTCGTTGAAGGTGGGGGAGTTGTTGGAACTAATGGTCGTGGAACATT GATGAAATTTAGTTCCAAGGGAGAACTGCTTGAGCATCACAAATATGATCGGGAGTACAAAAAGGTTTTAAAATATTTTG AGATGTATAGAGAGAGTCTGCTGTTATTCCCTGGTGAACAACGACCCATCCTTTGTGCAACATCACTCCCTGGTGACTTT AAGGAAGCAACTGAAGAGGATGAAGAGAAAGCATTTGAAGATGAAGAAGCAATTGAAGATGAGTATGCAAGTGGAGATGA GGAAGATGATGCAACGGATGATTCAAATGCATCTGAAGGTGGGTATCCAACTGAAGATGAGGAAGATGCAACTGAAGATG AGGAAGAGGGAGAAACTGAAAATGATGATGATGATGATGACGATGATGGTGATGATAATGAGGATGAAGATGAAGATGAC CTACTGTAA
Protein sequence (LotjaGi1g1v0297800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRSKKTKNPSLLDMENENEKNLSLPTELIIEILLRLPVRSLLRFRRVCTSWSSLISDPQFAESHFDLNAAPTDRLLLRFI NENRARVQSFDLASSLRDRSAVKTLNFPSPSMSCDHNPIHFLGSCRGFMLLAYERTSDFIVWNPTTGFDKQIQHFESDFM SASLHGFGYDKSTDDYFVVLIRLLIRANQAEIQAFSLKSESWHVTKSVNSQYVDHGDDFSSGVFLNDSLHWLVAPTARDT NAYVVAAFDLVEKSLSEIEIPLSPNLAAFVTGKVYHLRVLGECLSVCSSGGHTYGRADIWVMKKYKVQASWTKTFVISSC HIPCRHFYPVCFVEGGGVVGTNGRGTLMKFSSKGELLEHHKYDREYKKVLKYFEMYRESLLLFPGEQRPILCATSLPGDF KEATEEDEEKAFEDEEAIEDEYASGDEEDDATDDSNASEGGYPTEDEEDATEDEEEGETENDDDDDDDDGDDNEDEDEDD LL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 16 | 379 | 364 | 2.8E-88 | – | |
| PANTHER | 16 | 379 | 364 | 2.8E-88 | – | |
| ProSiteProfiles | 18 | 64 | 47 | 11.034 | ||
| Gene3D | 22 | 60 | 39 | 1.1E-9 | – | |
| Pfam | 22 | 60 | 39 | 3.3E-10 | ||
| SUPERFAMILY | 23 | 145 | 123 | 9.68E-16 | ||
| SMART | 24 | 64 | 41 | 2.8E-8 | ||
| TIGRFAM | 124 | 337 | 214 | 2.3E-24 | ||
| MobiDBLite | 399 | 482 | 84 | - | – | |
| Coils | 401 | 421 | 21 | - | – | |
| MobiDBLite | 406 | 482 | 77 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0297800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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