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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0298000 |
| Transcript ID | LotjaGi1g1v0298000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7L8S8|K7L8S8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0298000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:72213468..72217260) extracted from Lotus japonicus Gifu genome v1.2.
TGAAATTAAAATGCGACAATCACTAATAATGGAATCCAAATAAGAGCGTCCCTCCTCCTGTGATCTTCAAGTATTAAATA ACTGCAAGCAATCCATTTCAAGAGTAATCCGGCGAAAGCCCAAGTCGGCAGCTAGCTGCATTGTCCACCGCAATCTCAAA GCTTCAGCTAGAAAGTTTCGGGCTTCTAAGCCCCTAATGAAGAGCAAGTTTTAATTTTAATAGTGTACAAAAACATGATA AAACAAATAAAAGACCAAGAAATTGCTAACACAAAGGAAATGGAGAACGAGAAGATGAAGAATCTCACTCTACCTCTTCC CTCTCTTTGTGCCATGGACATGGAGAACCAGAACCAGAACGAGAACTACCCATCTACTGCTGAACCAAGCAACGTGGGGA ACAAGAAGGAGAAGAAACTCAGTCTTCCCCATGAGTTGATCGTTGAAATTCTGCTTCGGCTACCGGTGAGATCTCTACTA CGCTTTCGAAGGGTTTGTAAGTCATGGTCCTCTCTCATTATTTCCGATACCCATTTCGCAAAATCCCATTTTGACCTGAA TGCTGCACCCACTGATCGTCTTCTTCTTCGATTTCTCGATGAGGATAGCGGTAGAGTTCAATCCTTTGATCTAGCTTCAT CACTTCATGACCGTTCAACTGTCAAAACCCTCAGTGTCCCACCTCCATCCATGTTGTGTAATCACAACCCTTTGTATTTC TTAGGTTCATGCAGGGGGTTTATGCTTTTAGCCTATCAGCAAAGCGATGATATCATTGTGTGGAATCCAACAACCGGTTT CCATCAACAACTTCCAGATATAGACTATGATTTCATGTTTCTGTTTATATCTGGGTTTGGGTATGACAGATCATCTGATG ACTACTTTGTTGTTGTTATAACACTGTATCGTCCTCAAACTGAAATCCATTGTTTTTCTTTGAAAAGTGAATCATGGTGT GACCTTAAATATGTTAATATTCATTTTCATGATTGTGAGGATCATTCCGGACCCGGGCCCAAAGCCGGGGTATTCTTGAA TGACTATCTTCATTGGCTGGTCGTTGATATGGATACAGAGCTTCCTGTAGTTATTGCCTTTGATCTGGGAGAAAAGAGTT TATCGGAGATTTCTCTGTCGTCTGAATTAGCAGCGGAATTGGCACGGAAAGTGTATTATTTAAGGGTTCTGGGAGGATGC CTCAGTCTGTGTTACTCAGGTGGACGTGATGTGCATGAGAGGGCTGAGATATGGGTCATGAAAGAATATAAAGTGCAATC TTCTTGGACCAAGGCTTTTGTTTTGACTAATTCTTGTGAGGTTCCTTGCAAACACTTTTATCCAATATGCTTCATTGAAG GTGGTGGAGTTGTCGGAACAAATGGCAGTGAAAGATTGATGAAATTTAATGCCAAGGGAAAGCTGCTTGAGCATCTCAAA TATGGTGTGAAGCGCAAACATCGTCAAAAATATTTTCATATGTATAGAGAGAGTCTGCTGTTTTTCCCTGGTGAGCAACA ACATCTTTGTGTAACTGAAGATGAGGAAGCAGCTGAAGGTGAGAAAGCAAAAGCAACTCCAGATGAGGATGCTAGTGAAG ATGAGTATGCATCAGAAGATGAGTATTCAAGTACTGAAGATGAGGAAGAGGAAGCAACTGAAGATGAGGATGCAACTGGC GACGAGGAAGAGAACTGAAGATAACCTACCGTAACTGTCCAAGAAACTAAAAAAACTAGTATGCAATATTCTCCAACCCT AGTAACCTTTTTGTTCATATTCATTTGCATTATAAAAGAATGACAAGCTAAATGCAGAATGCATACATGAAAATAATACC TTACATACCGTATTCTCCCTTTCTTCCTCTACCTAATAATATTTCGTGATACTTGAAATTGTAAGGAAATATGAGGTTTG GTGGTGGATTTAATTCACCAATGATTAGAGAAAATATTTTATATCTAGCTCACGTAGAAAATTTAAAGCCGATTTGACAG GAAGACTTTATAAGAAAAAAATGTTTGCTCTATCTGTTATATTTGACAATTCAATTTTAAAGCTACAATCTTAGAAAATA TCCCCATGTTGATATTTACCATTAGCTTATGTTTCCGGCAAGCCACAAAGTATGCAAAAATATCTTCTACAATTTTCTCA ATGTTCTAACTTCTGTTACTGCTAGCCAAAATAGAATGACATATTACAAAATAAAACATTAAATAAGCTCTTCTTAATGC AGAAATAGTGTATGTTTTAGCAGTGATTTCAGTAAGATTGGGTTTAGATTAAACATAAAAATGTAATTATGCATTTGGGT TTAGAAATAATCTTTTTCCCCCTTCTTAATATTTTTTTGCATTTGCATTTTGTTTCTCTTACCCTCTTTTACATGGTTTT CAGGTTAACACTTAGGTGCCTTGGCAATTCCTGAATTTTATTTTTTTATATGTTGTTCAATGTTTTGGGTTGAAGTTGTG GAGATATTGTGGTCTTAACCATATGGGAGAGCTTAAAGATGGGATGGAGTGAAAGGGTTTAAACTTTATACTAATCAAGT TGTGATATATTTGATCTTGCGTGTAATGGATTCAACCACTTCCTCACATTGATCTAGTATTTGATAAGGTATTTTTATCA TAGTTTCATGATATCCCTAAAGATACTTTGTAGTTGTTTGTATGCCTATGTCAAGGATGGTGCAAACTGCAATGGATGAA AAAAAGAGTTTCAGCTCTACTTGCTAATGTCTCTGTTCTTATTTTCTCTTCCTTTGTCAAGATTATATCTATTACTAAAT CGGAAAAAGCTTTAGTTTTCACCTTCAAGATTAAATTTAGTTGCATAATCTATGATCTGAAGATATAATCAGATAGATCC ACAATCTTACAGCTACAACCGTATTCTTTTATGGTTTGCAAACTTTTTATATTTGGACTTTGTCATGATCTGACAGACTA TATATCAAAAGTTTACTCTTTAGGTTTGACATGATTTTTCTGCAGGGTTGTAATGACTTTGTAGTTTCCTTCTACGTTAT TTTCTACTTCATCCTTCTTTCAAGATCCCTGATCCTATCCAAAAGTTTATATTCATAGATATATGGTGGGCTTCTTTTCA ATCCTTATTATTAACCTTTACCTCAAAACGTATCCCTGTACGGTGCTGCTGATGTTTGTTAAATGCAACTGATCTAGATC CATCAGAGTTAAAAGATGATCTTTGATCTAAATATCCATCCCATTGAGAGTTGAGAATTCTCTTTATGTGATCTCTTTTG ATCTAGCTCAGAGAAGTTTCTTTACAACTTGGGTCTGAATGATGAAGTCTTGCTCTGAACCTAGTGCATTCCGATAATTA GTATGTATCTATAATTTTCCAGTTTTTCAATGGTCACTTAGTTTCACATAGAATCAGATTACTCTGCGAACTCATTTCAG TGCTTTGTGGTAGATGTTTCTATAATCCAAATATTAGAAGTATGAGTTTGATCTAGTGTCAATACTTATATAGGCCTACT ATCATTCCAATGGTGCATCAAAGTTAGGTGGTATCATATGTTGTTTTGTAGTATATACTGTTTTACATTTTTAGGATCTA ATTTAAGGTTTGCAGACAAATTACAATATCATTTCATCCATTTAGCCAACTTCACCTGATGGTAAACGGTTTTTTTTTTT CAATGTTAGTTGTATTTTTGTCATGGCCTTTGGACCCTCTATGCTTGGAGCTCTTCTGACTACCGCTAGGGGTGGAAATA AGCTAGGCAGTCCAACAGGGGCTCGTGGCTTGG
CDS sequence (LotjaGi1g1v0298000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATAAAACAAATAAAAGACCAAGAAATTGCTAACACAAAGGAAATGGAGAACGAGAAGATGAAGAATCTCACTCTACC TCTTCCCTCTCTTTGTGCCATGGACATGGAGAACCAGAACCAGAACGAGAACTACCCATCTACTGCTGAACCAAGCAACG TGGGGAACAAGAAGGAGAAGAAACTCAGTCTTCCCCATGAGTTGATCGTTGAAATTCTGCTTCGGCTACCGGTGAGATCT CTACTACGCTTTCGAAGGGTTTGTAAGTCATGGTCCTCTCTCATTATTTCCGATACCCATTTCGCAAAATCCCATTTTGA CCTGAATGCTGCACCCACTGATCGTCTTCTTCTTCGATTTCTCGATGAGGATAGCGGTAGAGTTCAATCCTTTGATCTAG CTTCATCACTTCATGACCGTTCAACTGTCAAAACCCTCAGTGTCCCACCTCCATCCATGTTGTGTAATCACAACCCTTTG TATTTCTTAGGTTCATGCAGGGGGTTTATGCTTTTAGCCTATCAGCAAAGCGATGATATCATTGTGTGGAATCCAACAAC CGGTTTCCATCAACAACTTCCAGATATAGACTATGATTTCATGTTTCTGTTTATATCTGGGTTTGGGTATGACAGATCAT CTGATGACTACTTTGTTGTTGTTATAACACTGTATCGTCCTCAAACTGAAATCCATTGTTTTTCTTTGAAAAGTGAATCA TGGTGTGACCTTAAATATGTTAATATTCATTTTCATGATTGTGAGGATCATTCCGGACCCGGGCCCAAAGCCGGGGTATT CTTGAATGACTATCTTCATTGGCTGGTCGTTGATATGGATACAGAGCTTCCTGTAGTTATTGCCTTTGATCTGGGAGAAA AGAGTTTATCGGAGATTTCTCTGTCGTCTGAATTAGCAGCGGAATTGGCACGGAAAGTGTATTATTTAAGGGTTCTGGGA GGATGCCTCAGTCTGTGTTACTCAGGTGGACGTGATGTGCATGAGAGGGCTGAGATATGGGTCATGAAAGAATATAAAGT GCAATCTTCTTGGACCAAGGCTTTTGTTTTGACTAATTCTTGTGAGGTTCCTTGCAAACACTTTTATCCAATATGCTTCA TTGAAGGTGGTGGAGTTGTCGGAACAAATGGCAGTGAAAGATTGATGAAATTTAATGCCAAGGGAAAGCTGCTTGAGCAT CTCAAATATGGTGTGAAGCGCAAACATCGTCAAAAATATTTTCATATGTATAGAGAGAGTCTGCTGTTTTTCCCTGGTGA GCAACAACATCTTTGTGTAACTGAAGATGAGGAAGCAGCTGAAGGTGAGAAAGCAAAAGCAACTCCAGATGAGGATGCTA GTGAAGATGAGTATGCATCAGAAGATGAGTATTCAAGTACTGAAGATGAGGAAGAGGAAGCAACTGAAGATGAGGATGCA ACTGGCGACGAGGAAGAGAACTGA
Protein sequence (LotjaGi1g1v0298000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIKQIKDQEIANTKEMENEKMKNLTLPLPSLCAMDMENQNQNENYPSTAEPSNVGNKKEKKLSLPHELIVEILLRLPVRS LLRFRRVCKSWSSLIISDTHFAKSHFDLNAAPTDRLLLRFLDEDSGRVQSFDLASSLHDRSTVKTLSVPPPSMLCNHNPL YFLGSCRGFMLLAYQQSDDIIVWNPTTGFHQQLPDIDYDFMFLFISGFGYDRSSDDYFVVVITLYRPQTEIHCFSLKSES WCDLKYVNIHFHDCEDHSGPGPKAGVFLNDYLHWLVVDMDTELPVVIAFDLGEKSLSEISLSSELAAELARKVYYLRVLG GCLSLCYSGGRDVHERAEIWVMKEYKVQSSWTKAFVLTNSCEVPCKHFYPICFIEGGGVVGTNGSERLMKFNAKGKLLEH LKYGVKRKHRQKYFHMYRESLLFFPGEQQHLCVTEDEEAAEGEKAKATPDEDASEDEYASEDEYSSTEDEEEEATEDEDA TGDEEEN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 56 | 420 | 365 | 3.2E-85 | – | |
| PANTHER | 56 | 420 | 365 | 3.2E-85 | – | |
| ProSiteProfiles | 58 | 104 | 47 | 12.067 | ||
| Gene3D | 62 | 101 | 40 | 2.7E-9 | – | |
| Pfam | 62 | 98 | 37 | 5.2E-9 | ||
| SUPERFAMILY | 63 | 189 | 127 | 7.33E-15 | ||
| SMART | 64 | 104 | 41 | 2.5E-9 | ||
| TIGRFAM | 165 | 376 | 212 | 1.4E-22 | ||
| MobiDBLite | 435 | 453 | 19 | - | – | |
| MobiDBLite | 435 | 487 | 53 | - | – | |
| MobiDBLite | 454 | 487 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0298000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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