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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0298300 |
| Transcript ID | LotjaGi1g1v0298300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7LIU0|K7LIU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0298300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:72235423..72242348) extracted from Lotus japonicus Gifu genome v1.2.
AAACAACCCACTATATGTAAATCCAACCCTTCCACCATGGAAAACGAGAAGGAGAAGAATCTCACTCTTCCTCACCAGTC TCTATCTGCTTCTGAAAGAAGCAATATGGAGAACGAGAAGAAGAAGAAGAAGAACCTCACTCTTTCTCATGAGTCTCTAT CTGCTACTGAATGAAGAAGCAATGTGGAGAACGAGAAGAAGAAGAACAACAACAAGTACCCCACTCTACCTCACGAGTTG ATCATCGAAATCCTGCTTCGGCTACCGGTGAGATCTGTACTGCGCTTTAGAAGGGTTTGCAAGTCATGGTCCTCTCTCAT TTCCGATCCCCATTTCGCGAAATCCCATTTTGACTTCAATGCTGCACCCACTCATCGTCTTCTTCTTCGATTTATCAATG AGAATAGGGCTAGAGTTCAATCCTTTGATCTAGCTTCATCACTTGGCGACCGTTCTGCTGTCAAAACCCTCAATTTCCCG TCTCCACCCATGTCGTGTGATCACAACCCTTTACATTTCTTAGGTTCTTGCAGGGGGTTTATGCTTTTAGCCTATGAACG TACCGGTGATGTCATTGTGTGGAATCCAACAACCGGTTTCCATAAACAAATTCTAGATATAGACCATGAGTTCATGTTTA GCTATCTATGTGGTTTTGGGTATGACAATTCCACCGATGACTATTTTGTAGTTGTAATAACACTGTATCTTCCTAAAACT GAAATTCGTGTCTTTTCTTTGAAAACCAAATCATGGTGTGACATTAAGTATGTTAATGTTCGATATATGGATTGTGGGTA TAATTCCGGACCCGGACACCCCGGGGTGTTCTTGAATGGCTCTCTTCATTGGCAGGTCACTCGTATGGATACAGGGCTTG ATGTAGTTATTGCCTTCGATTTGGTAAAAAATAGTTTATCGGATATTCCTTTGTCATCTGAATTAGCAGCGGAATGGACA GAGAAAGTGTATTATTTGAGGGAACTGGGAGGATATCTCAGTATGTGTTACGCAGGTGGAAGTCGTAGGCGTGAGAGGGC AGAGATATGGGTCATGAAAGAATATAAAGTGCAGTCTTCTTGGACCAAGGCTTTTGTTACGACTGTTTGTGACATTCCTC GCAGACGCTTTTATCCAATATGTTTCATTGAAGGTGGTGGGGTTGTTGGATCAAATGGACATGGAAGATTGTTGAAATTT AATGCCAAAGGAAAACTGCTTGAGCATCTCAAATATGATCGGGAGTACGAAAATGGTCAAAAGTATTTTGAAATGTATAG AGAGAGTCTGCTGTTTTTCCCTGGTGAGCAACGACTCCTTTGTGTAACTGAAGATGAGGAAAGTGAAGATGCAGAAGAGG AAGAAACTATAGATGAGGATACATCTGAATATGAGTATTCAATATCTGAAGAAGAGTATTCAACTGAAGATGAGGATGCA ACTGAAGACGAGGAAACAACTAAAGATGAGTATGCAACTGAAGGCGAGAAAACAACCGACGATGAGGAAGAGAACTGAAG ATAACCTACAGCAACTGTTCAAGAAACAAGAAAAAATAGCATGCAATATATACTCCAACAATAGTTACCTTTTTGTTCTG AAATAACCTCATTTTAATGCTTAAATAGTGTAGTTTTAGCAGTGATTTCATGTGTTTTAGCAGTCATTTCAGTAAGTTTG GATTTAGAGCTAAAATTTAAATGATGTGTCGTATTAGGATTTATGAAATCTTAGTTGGAGTTAGTACATGTTATGTTGTA GAATTTTTTTTTTTCCTCTTAATATTGTTATTGCATTAGCATCTTGTTTCTCTTACCCTCTTTTACATGGTTTTCAGATT AACACTTGGGTGCCTTCACAATTCCTGACTTTTTTTTAAATGTGCTGTTCGATGTTTTGACTTGAAGTTGTAAAGATATT GTGGTCTTAACTCTTACTATTAACCATATGGGGTCAAATGAAAGGGTTGAAACAAATTAAGTTGTTTTGAAAGGGTTGAT ATTTTGTTTTTTTTTTTGATAGGCAAGGGTTGATATTTTGTGTAATGTATTTAACCACTTTGTCACATTGATCTAGTATT TGAAAGTTTTTTTGTCATATTTTCATTTTGTATTCCTATGGGAAGGACAGGGCGCCATGGATGAAAAAAATTTCAACTCA ACTTACCAATGTCTATGTTCATATTTTCTGTTTCTAATACTGAGTGGGAAAAAAGCTTTAGTTTTCACTATCAAGATATT TAGCTGCATAATCTACGAGTAGAAGTTATCAGATAGATCCACAATCTTACAGGTCCAACCGTATTCTTTTATGGTTAGCA AACTATTTATATTTGGACTTGATAATTGACATCAGATGAATAGAAGTGAACATATGGAATTGCTATGGCTTTGGGTTGTT GCATTTATTTTCCATTTTACTCAGTAGGTTTGACATACGTTTTCAGCAGAGTTGTAGTGTTGTATGGTGAATCAGTTGAT GGCAACGGAACAGAGTCGATTGTAGTTTTTTTTTTCACTTAAGTTCAATGATGTTGACAGGCTATGGTTCAAAAGTTTAG TGATAGATATATGGTGGGCTTTGTTTCAGTCCTTATTAACTAGTATCCTTAACTTTAAACTTATCCATGTAGGTTGCTGC TGATGTTTTTTACATTGTATAGTATCAAATTTATGGTTTTGAGACAAATTACAATATCATTATTTCAGCCATGTAGCCAA CTTTACCTAATGGGAAGGGGCTGTTTACCCCAATGTTAATTGTGTTCCTGTCATGGCCTTTGGACCTTCTATGCTTGGAA ATCTTCCGACTTCAACACAGGGGAGGGGGTTCAATGTTCTACCACAATTTGCACTGAACCATACATTGCTAATTTCAATT ATAATCTACTGTTTGTATGTTTGAGTTCTTCAAGTTTTCTTCTTTGCAGATAGTTATTGGCTGTGTATTAAAATGTGATG TGCAGAGACTAAGTTATTTGCAAATAGAATGTATAATTGATAAGACCAAAGTGATAATGATACAGGATGATTGTTAATCT TATCATTTCACTTTTAGTTTCATCTCTTCTCTGTCTTTCTTTCTTCTCCACTATCTATCTAAATTGGTTTTGCTCTGGGT GTGCTAGTAGAGCGCATGGTGAATGGGATAAAATGTAAAGGAATACATTTGAAGGATTTCATGACGTCTGTCTAGTAGCT TTTATGAGTGAATGCATGAGTAGATGTCTGGCCACCTTTGTTTCTTTGGTTATTTTGTGGATACTAAGGGAAAAAACTTT GATTGAAGGATATGTAGATGAGATTCTGAAAAGAAATAGTATCTTTAAGTGAAAGGAGGAATATCAGTAGCTTTTCAAGG AGGAATCCATAGAGTGATCCGTAGTTAAAACTATATCTCATATAGAGTTTTGATTGCCCAGTTTTACTTCATCTACTTCA CGTTTGAACTGGAAGTTGCTAATCAAAGAATACCGTGTAACTTAAGGAGTAGAACAAATTTGTTAAAATGTTAAGTGCAT ACTATTACTGCAAGACAAGATATGTATTTTTATTTTTGGGTCTTAACATTACTGCATATCTGTACATTGTTTGTGTGTAT ACTATCTCGAAGTCGAACTGCAAACCCCTACGCCTATGTACATTGTTGGGTGTAACCACCAATCAAAATTTCTCAATTAG TCTTAGAGCCTCTTTGGTAAAGTATGAAAATGAAAAAGTATCATATTTTAAAATATTTTTTCAAATAACAATTTGCTATT TTGTGTCTTCAAATATGTTATTTTCCTTTTTTCAACAAGTTCTTAGTGTCCGTTTTGGTTGATGTTTGCTTCAACATAAA CAAAAATACACATGTCTCAATGCATTGATAGAGAAATAGATTTTGTCACATTAACTCAAATAGATTTTGACACTTAGTGT ATGTATAAAATGGTCGTCAAATTATTGATGGCCTAAGCTGTCAGTAACTTGTGGTCTTAAAAAATTCAGACCATTAGTTA TTTACTGACAGTCAAAGCCTTCAATAATTTCATTTTTTTTATATTACTGATGACTTGATTTGTTAGTAACTTGTCGGTCT TTTAAAATTTTTGTTGTGCGTTATCGAAGGTCAAAGCTATAAATACATTATAAATATTTTGCCAAAAGTCATGAAGATCT AACTGATGGCTAAAGCAGTATGTAACCTAAAAATAAGTATGTTCGAAGAACTTCTTACTCACACTTCCTCCTCTACTATA AACCCAAATCAACAAAACTACAAACAAGGAGATTTAGGGGTTCTCTTGTCATTTAACCCTCTTCAGCCAGAGGTTACCAA TATCCAAGTCCTCCATGCCTTGGCTCCTCCTCCTACCTTTTTTTCCTCCTTTGTGACATCACAAGGACTTTTTTAAAACA AAAAGGACTACAAGCTATAAAATCAGGGACCATTTAGATACAATTGCATAAGTCAGAGACTAAAAACATATTTAATTATT TTTATTTTTTAAATATATATAAAAAAATTAAAGTAAATATATACAAAATTAGAAAAAGAAAAAATTTGTTAATTTTTTAA GGAAGATAAAAATACAAATATTGCAACATTCTATCATTTTGCGTCGCTTCTTGAACCTAAGCATCTACGACACATTGTTA TACACGCTTTTGGTGACGCTTTTTACCATCTCAATGCGAAGTGTTAGTAAAACACATTTACGACAGCCTCAAGCCACTAG AAAAATTTGAGTATGTTTTCATTCCACAATTTTGTTGCAGTTTGAGATAATTAGAAACGTGTTATATGTGCTTTCAACAT TTTGCATTTTGTGGTGGTTAAAAACTGCCACCACTAAATGCGTGTGTCTAATTTGTCCCGAAAAATTGAGATTGTCACAA GAAGGAGAAGAAGCTCACTACTCTACCTCTTCTCTTATTAGAAGTTAGTTACATAGTTAGTTAGAGTAGTTAGTGAAAAA TCTTCACTTAGAGATAGTTGGTTAGAGTTAATTATGCATTGAGTAGTAGTATATATAGATAAACACTGAGTAGTAATTGT AATGAAAATTAGAATTCATTGCTCCTTCAAACACTTCCTCTCTGTGGCATCTTTCTCTCTGGTTTCTTGATATCTCTCTC TTTCTGCTGCTGCTGCTACTGAACGAAGAAGCGACATGGAGAACCAGAACGAGAAGAACCCATCTACTGCTGAACCAAGC AACGTGGAGAACGAGAACGAGAACAACCCCTATCTCCCTACCGAGTTGATCAATGAAATTCTGCTTCGGCTACCGGTGAG ATCTTTACAGCGCTTCAAATGCGTTTGCACATCATGGTTCTTTCTCATTTCCGATACCCATTTCGCAAAATCACATTTTG ACTTCAATGCTGCACCCACTCATCGTCTTCTTCTTCGAATTCCTAATGAGGAGCAAGTTGAATCTTTTGGTCTAGAATCA TCGCTTCAAGACCATTCTACTGTCTTAACTCTTCCTCCTCCACCCGGGTTCGAATTCGAAACCACACCTTCTTGTGATAA CTATTTGGGTTTTTTGGGTTCTTGTAGAGGGTTTGTGCTTTTCCTCTATCCACAATCAGGTGATATCATGGTCTGGAATC CAACAACCAGATTCCATAAACGTGTTGAATATGTAGACGACGGGCATTTCATGAGTAGACATCTATATGGTTTTGGATAT GACAAGTCAACCGATGACTATTTTGTAGTTCTTGTTAAACTTGTACTACCGAGTGGGGGTGAGGGTGTTATTCTTGGTGT TTATTCTGTGAACACGGATTCATGGTATGATGAGATTGGCAAGCATGTTAATGGTCAATACATGAAAGATTTTGAACCGG AGGAATCCTATGCTGGGGTGGACTTGAATGACTCTCTTCATTGGCTGGTGAAATCTAAAGACACAAATCTTCCTGTAATT ATTGTCTTGCATTTGTTAGATAAGAGTTTTTCAGAGATTTCTCTACCAACTGAATTTGCAGCACATGATTTAACCGCACT GAAAGAGTATCACTTGAGGGAACTCGGAGGATGCCTCAGTGTTTGTTACTCAAGTGGTAGAGGACAAAATTATAGCCCTG AGAGATTGTGGGTTGTAGGTGATGGCTGTGACGGAGCTGAGATATGGGTCATGAAAGAATATAAAGTGCAGTCTTCTTGG ACCAAGGCTTTTGTTATGACTGATTGTGACATTCCATGCAAATACTTTTATCCGATATGCTTCATTGAAGGTGGTGGAGT TGTTGGATCAAATGGGAATGGAAGATTGATGAAATTTAATGCCAAGGGAGAACTGCTTGAGCATCGCAAATATAGGCATA AGTCCAATAATGTTCGAAATTATTTTGATGTGTTTAGAGAGAGTCTGATATTATTCCCTGGTGAACAACCACACAACTTT AAGGAAGCAATTAAACATGAGGAGGCAGCTGAAAATGAGGAAGAGGAAGCTAGTGAACTATCACTCCTTAGTGTAAAATC CCTCCCTTGTGACTTTAAGGAAGCAACTAAAGATGATAAAGAGGAAACAACCAAAGATGAGAAAGCAATTGATGATGAAG AAGCAGAATCAACTGATGACAAGGAAGCAGCTGAAGATGAGGAAGAGGAATCAACTGAAGATTACGTACAGTAACTGTCC AAAAAAGAAATATTAGTAGGCAATATTCTCAGCCCTTGTTACTTTTTGTTCTTATTCATAAACATGAAAAGCTAAATGCA GAATACTTGAGACTTGAAAATGGTACCTTATACATAACACTTTACTCTCCCTATGTTCCTGCATAATAATATCTCCTTTA TTTTTTTAATTTTGTATAAACTTTATACTTGAAGGTGCAAGGAAAGCTAAAGTTCCGTGGTATATTTAATTCGCCGATGA CTAGAGAAAAACACTTAATATCCTGCTCAGTTAGAAACATAAAAGC
CDS sequence (LotjaGi1g1v0298300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGTGTGATCACAACCCTTTACATTTCTTAGGTTCTTGCAGGGGGTTTATGCTTTTAGCCTATGAACGTACCGGTGA TGTCATTGTGTGGAATCCAACAACCGGTTTCCATAAACAAATTCTAGATATAGACCATGAGTTCATGTTTAGCTATCTAT GTGGTTTTGGGTATGACAATTCCACCGATGACTATTTTGTAGTTGTAATAACACTGTATCTTCCTAAAACTGAAATTCGT GTCTTTTCTTTGAAAACCAAATCATGGTGTGACATTAAGTATGTTAATGTTCGATATATGGATTGTGGGTATAATTCCGG ACCCGGACACCCCGGGGTGTTCTTGAATGGCTCTCTTCATTGGCAGGTCACTCGTATGGATACAGGGCTTGATGTAGTTA TTGCCTTCGATTTGGTAAAAAATAGTTTATCGGATATTCCTTTGTCATCTGAATTAGCAGCGGAATGGACAGAGAAAGTG TATTATTTGAGGGAACTGGGAGGATATCTCAGTATGTGTTACGCAGGTGGAAGTCGTAGGCGTGAGAGGGCAGAGATATG GGTCATGAAAGAATATAAAGTGCAGTCTTCTTGGACCAAGGCTTTTGTTACGACTGTTTGTGACATTCCTCGCAGACGCT TTTATCCAATATGTTTCATTGAAGGTGGTGGAGTTGTTGGATCAAATGGGAATGGAAGATTGATGAAATTTAATGCCAAG GGAGAACTGCTTGAGCATCGCAAATATAGGCATAAGTCCAATAATGTTCGAAATTATTTTGATGTGTTTAGAGAGAGTCT GATATTATTCCCTGGTGAACAACCACACAACTTTAAGGAAGCAATTAAACATGAGGAGGCAGCTGAAAATGAGGAAGAGG AAGCTAGTGAACTATCACTCCTTAGTGTAAAATCCCTCCCTTGTGACTTTAAGGAAGCAACTAAAGATGATAAAGAGGAA ACAACCAAAGATGAGAAAGCAATTGATGATGAAGAAGCAGAATCAACTGATGACAAGGAAGCAGCTGAAGATGAGGAAGA GGAATCAACTGAAGATTACGTACAGTAA
Protein sequence (LotjaGi1g1v0298300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSCDHNPLHFLGSCRGFMLLAYERTGDVIVWNPTTGFHKQILDIDHEFMFSYLCGFGYDNSTDDYFVVVITLYLPKTEIR VFSLKTKSWCDIKYVNVRYMDCGYNSGPGHPGVFLNGSLHWQVTRMDTGLDVVIAFDLVKNSLSDIPLSSELAAEWTEKV YYLRELGGYLSMCYAGGSRRRERAEIWVMKEYKVQSSWTKAFVTTVCDIPRRRFYPICFIEGGGVVGSNGNGRLMKFNAK GELLEHRKYRHKSNNVRNYFDVFRESLILFPGEQPHNFKEAIKHEEAAENEEEEASELSLLSVKSLPCDFKEATKDDKEE TTKDEKAIDDEEAESTDDKEAAEDEEEESTEDYVQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 259 | 253 | 7.8E-59 | – | |
| PANTHER | 7 | 259 | 253 | 7.8E-59 | – | |
| TIGRFAM | 13 | 222 | 210 | 5.4E-26 | ||
| Pfam | 112 | 212 | 101 | 2.2E-4 | ||
| Coils | 281 | 301 | 21 | - | – | |
| MobiDBLite | 311 | 329 | 19 | - | – | |
| MobiDBLite | 311 | 355 | 45 | - | – | |
| Coils | 328 | 348 | 21 | - | – | |
| MobiDBLite | 330 | 355 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0298300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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