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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0299200 |
| Transcript ID | LotjaGi1g1v0299200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|A0A0B2SLE8|A0A0B2SLE8_GLYSO F-box/kelch-repeat protein; Found in the gene: LotjaGi1g1v0299200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:72374631..72380125) extracted from Lotus japonicus Gifu genome v1.2.
TTAAATTTAAAAAAAAAACCGGTCTAACCGGTTAAACCACCCCTAAACGGGCAGAAATCGGCTATAACCGGTCAATAACG GTGGGCTGACCTGCTAAGCAGGTCACCCACTATATAAACCTTCTTTTCCTTTCTCACTCTCCATAACCCTAGCCGTTCTT CTTCCTCTCCTCTTCTCCCTTCACGCTCCTCTTCTCTCCCTTTCTCCTTCCTCTCGATGCCTCCTCTTCTCCTTCCTCTC TCCCTCACTTCTTCTCCCTCGATCTCTCTGGTCCACGCCTCCAAAGCCCCAGCCTATCACCAAACAGCAACCGCCACCAC CAAACAACCACATGCAGTCACCATCGGCCACCAAACAACCACCACAGCCACCATACAGCCTCAATCCAACCCCCACAACC CCTGTTTCATAGCTTCAAAGCCTTGAAGCTTGCAAAAATCCTTCCTTTTCACACATGCAAGAGGAAATACTTTCAGATCA GAGCTTCCAGAACTTCACCAGAGAAGATTTTTTATTTATTTATGTAAATATCAATTTTTATGTTTTAAGTTTCAATTTCT TCATGTAAAGTTTCAATTCATTCAATAAAATTGCAATTTTCGTCCTCTGATTATGTCTCTGTTGAACTTGAATTGTTCAA TTTCATCCTTTCTGTTATGTTTGCCTCTGAAAGCTGTTGGGGGAGTGAGAGAAAATAGATTATTTTAATTAAGAAACTGA AAAAGCAAAGTTGCTTGCAGAAGCAACCATGCATTGTAGTTAAGAAATTGAAACTGCCAACTAAGCAAGCTCCAATAGGT TGAAAAGCTAAGAAACGGTTCTTAGCATCTCCAGCTGGTTTAAGAAACCAGCGTTGGAGATGCTCTAATGAGACTTATTA TGGAGAATGCATTCATTGATTCATTACACTGTGACTGTGAGTGTGAAGGAAGTAACCAAACAAAACCCCCATTTCCCCTG TACTGGCTACAGAAGGAATCGACATGGCGAACGAGAAGACGAACCCCACTCTACCTCACGAGTTGATTGCTGAAATTCTG CTTCGGTTACCGGTGAGATCTCTTCTGCGCTTCAAATGCGTTTGCACATCATGGTTCTTTCTCATTTCTGATCCCCAATT TGCTGAATCCCATTTTGACCTAAATGCTGCACCCACTCACCGTCTTCTTCTTCCATGTCTGGATAAGAATAAACTTGAAT CCCTTGATTTAGAGTCTTCATCACTTTTCGTAACCCTCAATCTTCCGCCTCCATGCAAGTCTCGTGATCACAACTCTTTA TATTTCTTGGGTTCTTGCAGGGGCTTTATGCTTTTAGCCTATGATTATAATCGACAGGTTATTGTGTGGAATCCATCTAC GGGTTTCTATAAACAAATTCTAAGTTTTAGTGATTTCATGCTAGACTCACTCTATGGTTTTGGGTATGACAACTCAACCG ATGACTATTTTCTAGTTCTTATAGGGCTCATTTGGGTGAAGGCTATAATTCAGGCTTTTTCTGTGAAAACCAATTCATGT GATTTCAAGTATGTTAATGCTCAATATAGGGATCTTGGATATCATTACAGACATGGGGTATTCTTGAACAACTCTCTTCA TTGGCTGGTTACTACTACGGATACAAGTTTTTCTAATGATACAAGTTTTCTTGTAGTTATTGCCTATGATTTGTTAGAAA AGAGTTTATCAGAGATTCCTCTGTCGCCTGAGTTAGCAAAACCTGTGTTAACAGCGGAGGGTGCACCCAAATTTTATCAC GTGAGGGTACTAGGAGGATGCCTCAGTCTGTGTTACAAAGGTGGTAGGCGTGATAGGGCTGAGATATGGGTCATGAAAGA ATATAAAGTGCAGTCTTCTTGGACCAAGGCTTTTGTTGTGACTGATTGTGACATTCCTTGCATACACTTTTACCCGATAC GCTTCATTGAACGTGGCGGAGTTCTTGGATCAAATGGCAATGGAAGATTGATGACATTTAATGCCGAGGGAAAACTGCTT GAGCATCACAAATATGGACAGGAAATAAAAAATGTTCGAAAAGATTTGGCAATGTATAGAGAGAGTGAGTACAAAAATAT TCAAATATATTTTGAAATGTATAGAGAGAGTCTGCTATCGTTCCCTAGTGAACAGCTACACCTTCGTGTAACATCACTCC CTCATGGCTTTAAGGAAGCAAATGAAGTTGAGGAAGCAACAAAAGATGAGGAAGAGGAAGCTAGTGGGCTGTCACTCCAT AGTGTAAAATCACTCACTTGTGAATTCAAAGAAGCTACTGAAGAGGTGGAAGCAGCAGAAGATGAGGAAGAGGAAACAAC TGAAGATGAGGATGCATCTGATGACAAAGAAGATGAATCAGAAGAGGCATCGACTGAAGACGGGGAAGCAACTGAAGATG AGGAAGCAACTGAAGATGTGGAAGCAACTGTTGATGAGGAAGAGGAAGCTACTGAAGTTGAGGAAGCAACTGATCACGAA GAAGTTGAATCAGAAAAGGAATCAAATAAAGATGAGGAAGCAACTGAAGATGAGGAAGAGGAATCAAGTGAAGATGACTA TATCTAACTGTCCAAAGCAGAAGAATTAGTATGCAATATTCTCAACCCTTGTTACCTTTTTGTTCTTATTCATTTGCATT ATAAAAATTGAAAAAGCTACATGCAGAATACATGATACTTGAAAATGGTACCTTATACATATAGCTGTACTCTCCCTTTA TTCCTACCTAATAATATTTCCTTTATTTTTGTATAAATGTAATTCTTGAAATTTGAAATTGCAAGGAAAGATAAGTTTTG GTGGTAGATTTAATTCACCGATGATTAGAGACTCTAATCATATTTAGAGAAAATATTTAATATCTTTGCTCAGTTAGAAA CATCAACGGCAATTTGAGTGGAAGATTGTATAAGAAAAAATGTTTGCTCTATCACTTATGTTTTTCTGTTATATTTGACT CGCTTTTAAATATAAAATCTTATAAAATATCTACATTTTGTCATTTACAATCGGCTCATGTTTGTTGCAAGTTACGAAGT ATGCAAGACTATTTCATACATTTTCCTCAGTGTCCTAACATTTCTTCAACTCATGCTACTGCTAGCCCAAAAAGAGAATG TCATACATAAGACATTAAGTAACCTCATTTTAATGCAAAAGTAGTTTGTTTTAGCTGGAGTTACTACATTCTATTTAGAA TCATTTTGTTTTATCCTCTTAATGTTGTCATTGCATTTGCATTCTGTTTCACTTACCCTCTTTTACATGGTTTTCAGGTT AGCACTTATGTGGCTATACAATTCCTGGCTTTTTTTTATTTAATGTTCTGTTTGATGTTTTGACTTGAAGTTGTGGAGAT ATTGTGGTCCTAACCATATGTTAGCTTGGAGATGGGGGATAAAGAAAATGGGTTGAAACTAATCAAGTTGTGATATGAAT TGATCTTGCGTGTAATTGATTTAACCAGTTTGTCACATTGTACTAGTATTTGATAAGTTTTCTTGTCATAGTTTCATGAT TATCCCTAAAGATACATTGTAGTTTGTATGCTTATGGTAAAGTCGGTGCAATGGTTGCAAAAACTTTGTGTTTCAGCTCA ACTTGCTAATGTCTCTGTCCATAATTTCTCTTCCTTTATCAAGATTATATTAATTTCTGAATGGGAAAAAGCTTCAGTGT CTACTGTCAAGATTCAAGATTATATTTTGCCCCATAATCTATATGACCAGAAGATATATAATCAGATAGGTCCACATACT TACAGCTACAGCCATATTCTTTTATGGTTAGCAAACTTTTAATATTTGGACTTGATATTAGAGTTTTTTGTATAGAAGTG AACATAGGGGATTGCTATGGCTTTGGGTTGTTGCATTTCATTTCCACTCTACTATTTAAGTTTGTCATACTTTTTCAGCA GGGTTGTAATGCTGTAGAGTGCTTGTGATATTTGTTACTATGCAACTGATCTATGTTGAAATCCATTAAGATTTCAACAG TCGAGGCAACTAGAAAAGAAATTGACTCCGACCGTACTATGTGGAAAAGATTATCTGATCGAAATATCCATCCCTGATCA AAATTCTATTTCTGTGATCTCTTTTAACTTGCACAAAGAAGTTTCTTTGCAACTTGGTTCTGATGAAGTCTTGCTCTTGA ACCTAGTGTGTTCCCATGATTAGGAACTATCTATACTATTCAATTTATCGACGAAATATTATAGTTTCACCCAGAATCAA ACTACTCTGTAACCTCATTGCAGTGCTTTGTGGTAGATGTTATGAACAATTTGTGTTTAAACCTGGAGAAATTCTTAGAG AGATTGTTGTTAAAAATCGGTTTCTTTTAACTATTTATCCCCTTACCTTTTTGATCTAATATATATTTTTACACAAAAAA ATTAATGGAGCTTCAATCTTTTCTGCTCCCACCCCTGCATTGGTCTAAACTTGAGTTGTTTTTCCAATTAATATGGTCTG TTGAATTATCCTGCCTGCTTCTCGATCAACTGAATCCAGATTCGCCTCAACTTTAATTACCCGTCTCTTTTGATTCCTTT TCATCCTATTAGAATGTCTGCTATAAATACTACTTTTAACACCCAACTTCAAATCCATTTGCATCTCACCTTGAATCCAT TCTCTCCAATTAGTCTCCTCTTCATCAACACGGCAGGCGCAAGAAATTCAATTCCAGTGATGACACCCAACAAAGAGCAG TGGACCATTGTTGCCATAGTAATCCTATTATGGTATGTTCCAATCATGGATAAGTTAAGTGGGATCCTTTTATTTTAGAC TGCAATTGTTTAATCTTCTTTCCATTCTCATTTTCCGCAATTGTTTAATCTTATTTTTTGTAGTGTTATTAGCATATAGC TGCTTAACTTACCTCTTAACTCATTTTTTAAATTTTATTGCAGATACTTCAATGCATTGCTGAGGCTGTTTTAGCGAGTA AGCATAGAGAGGTTGTACATTCTATCTCACTATGTGTTTTTACTTGAATCTGGAAGTACATATGGATATGGCTATGTGTT TTTACTCAGAATTTTTCCAAGGAAACATCTAAAGAAAAACCTGGATTACTTTTTCTTTTGAACTATTAAAGGACATAATT GAATGGAAAGAGCAAAGGCGGTGAAATGATACGGGAAGATGAGACTATAGGTTGCTTTTGTTTTTCCCATTCAAGGGTTC CTATTCATTTTGGGTTCATGTGTCTAGTTTGAGAGGTTGCTAAATTCGTCTCTCCTGTCTTTAACTGATAGCAGCCATAA ACAACATATGACCCGGAACTACATAACTGAATTTTGAATACATGAGTAGCTGATGATTTTGGATACTTACTCATTTTTGT TCATGATAAGGCCTAGATTATTTTATCCCTTCCCATGCCATGAGGTAAAAAATGACTCTTTTGCAAAAACTAAGCAAAAC GAAGTTTTGTATTAATAATAACATTGGAAAAATATTGACAATATTGGATAGCTGG
CDS sequence (LotjaGi1g1v0299200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAACGAGAAGACGAACCCCACTCTACCTCACGAGTTGATTGCTGAAATTCTGCTTCGGTTACCGGTGAGATCTCT TCTGCGCTTCAAATGCGTTTGCACATCATGGTTCTTTCTCATTTCTGATCCCCAATTTGCTGAATCCCATTTTGACCTAA ATGCTGCACCCACTCACCGTCTTCTTCTTCCATGTCTGGATAAGAATAAACTTGAATCCCTTGATTTAGAGTCTTCATCA CTTTTCGTAACCCTCAATCTTCCGCCTCCATGCAAGTCTCGTGATCACAACTCTTTATATTTCTTGGGTTCTTGCAGGGG CTTTATGCTTTTAGCCTATGATTATAATCGACAGGTTATTGTGTGGAATCCATCTACGGGTTTCTATAAACAAATTCTAA GTTTTAGTGATTTCATGCTAGACTCACTCTATGGTTTTGGGTATGACAACTCAACCGATGACTATTTTCTAGTTCTTATA GGGCTCATTTGGGTGAAGGCTATAATTCAGGCTTTTTCTGTGAAAACCAATTCATGTGATTTCAAGTATGTTAATGCTCA ATATAGGGATCTTGGATATCATTACAGACATGGGGTATTCTTGAACAACTCTCTTCATTGGCTGGTTACTACTACGGATA CAAGTTTTTCTAATGATACAAGTTTTCTTGTAGTTATTGCCTATGATTTGTTAGAAAAGAGTTTATCAGAGATTCCTCTG TCGCCTGAGTTAGCAAAACCTGTGTTAACAGCGGAGGGTGCACCCAAATTTTATCACGTGAGGGTACTAGGAGGATGCCT CAGTCTGTGTTACAAAGGTGGTAGGCGTGATAGGGCTGAGATATGGGTCATGAAAGAATATAAAGTGCAGTCTTCTTGGA CCAAGGCTTTTGTTGTGACTGATTGTGACATTCCTTGCATACACTTTTACCCGATACGCTTCATTGAACGTGGCGGAGTT CTTGGATCAAATGGCAATGGAAGATTGATGACATTTAATGCCGAGGGAAAACTGCTTGAGCATCACAAATATGGACAGGA AATAAAAAATGTTCGAAAAGATTTGGCAATGTATAGAGAGAGTGAGTACAAAAATATTCAAATATATTTTGAAATGTATA GAGAGAGTCTGCTATCGTTCCCTAGTGAACAGCTACACCTTCGTGTAACATCACTCCCTCATGGCTTTAAGGAAGCAAAT GAAGTTGAGGAAGCAACAAAAGATGAGGAAGAGGAAGCTAGTGGGCTGTCACTCCATAGTGTAAAATCACTCACTTGTGA ATTCAAAGAAGCTACTGAAGAGGTGGAAGCAGCAGAAGATGAGGAAGAGGAAACAACTGAAGATGAGGATGCATCTGATG ACAAAGAAGATGAATCAGAAGAGGCATCGACTGAAGACGGGGAAGCAACTGAAGATGAGGAAGCAACTGAAGATGTGGAA GCAACTGTTGATGAGGAAGAGGAAGCTACTGAAGTTGAGGAAGCAACTGATCACGAAGAAGTTGAATCAGAAAAGGAATC AAATAAAGATGAGGAAGCAACTGAAGATGAGGAAGAGGAATCAAGTGAAGATGACTATATCTAA
Protein sequence (LotjaGi1g1v0299200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANEKTNPTLPHELIAEILLRLPVRSLLRFKCVCTSWFFLISDPQFAESHFDLNAAPTHRLLLPCLDKNKLESLDLESSS LFVTLNLPPPCKSRDHNSLYFLGSCRGFMLLAYDYNRQVIVWNPSTGFYKQILSFSDFMLDSLYGFGYDNSTDDYFLVLI GLIWVKAIIQAFSVKTNSCDFKYVNAQYRDLGYHYRHGVFLNNSLHWLVTTTDTSFSNDTSFLVVIAYDLLEKSLSEIPL SPELAKPVLTAEGAPKFYHVRVLGGCLSLCYKGGRRDRAEIWVMKEYKVQSSWTKAFVVTDCDIPCIHFYPIRFIERGGV LGSNGNGRLMTFNAEGKLLEHHKYGQEIKNVRKDLAMYRESEYKNIQIYFEMYRESLLSFPSEQLHLRVTSLPHGFKEAN EVEEATKDEEEEASGLSLHSVKSLTCEFKEATEEVEAAEDEEEETTEDEDASDDKEDESEEASTEDGEATEDEEATEDVE ATVDEEEEATEVEEATDHEEVESEKESNKDEEATEDEEEESSEDDYI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 363 | 361 | 1.8E-81 | – | |
| PANTHER | 3 | 363 | 361 | 1.8E-81 | – | |
| ProSiteProfiles | 4 | 50 | 47 | 8.888 | ||
| SUPERFAMILY | 9 | 126 | 118 | 2.35E-14 | ||
| Gene3D | 9 | 46 | 38 | 4.1E-8 | – | |
| Pfam | 10 | 45 | 36 | 2.5E-7 | ||
| SMART | 10 | 50 | 41 | 2.6E-6 | ||
| TIGRFAM | 104 | 306 | 203 | 4.9E-17 | ||
| Coils | 421 | 448 | 28 | - | – | |
| MobiDBLite | 429 | 527 | 99 | - | – | |
| MobiDBLite | 433 | 500 | 68 | - | – | |
| MobiDBLite | 509 | 527 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0299200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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