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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0302000 |
| Transcript ID | LotjaGi1g1v0302000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase-like superfamily protein; TAIR: AT3G15720.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720; TrEMBL-Plants: tr|G7JXT8|G7JXT8_MEDTR Polygalacturonase/glycoside hydrolase family protein; Found in the gene: LotjaGi1g1v0302000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:73596131..73601297) extracted from Lotus japonicus Gifu genome v1.2.
GACCAAAGTTGCAATTAAGCCTAGTTTCTTTCTCAATACATGTTCGACTCTTTCTCTCAAACTCAACGCCGCGGCTGCAC CGTCCTCCGTCGAATGGAGGAGGAGAGATGGTTTGGCTCGCTGGAGGTTCTGGGTTCGTGGGGTTGTTCTGGAAGGGTTC TAGTGCCGAGGAAGGGAGGTTCGTGGCTGGTTGGTGGTGTGGTGGGTAGTCTCTCTTCCCGTTCACAACTCTGCATCTGA GTTATGGAACCAGTTGCAGCAAAATGTCTCTAAGCATTCCCGTTCACAAGGTAAATCCCCCTTTTCCCCTTCTGGATTTC TTCTGTATCCTACCGATTCGTTGAAATCAGAGCGATGAGAATTTGTGCAGTCCAACAAGATCAGGCGCCAGATTGAGGAG CTCGAGAGAGTTGCCGGTACCGTCGATGGCGTGCCTGTTGATTCCTACCTAACTAGGTCCGTTTTCAATTGCTTGATCTC TTGCTGTTTTGTTCAGAGATGAGTTTTTTCTTTGTTTAGGAGGTGTGGAGTTAGTTAGTGTTGATCATAGTTAGATTTAG GAGATGCGGAGTTAGTTAGTGTTGATCATAGTATAAGTCTTTCTCATCCATTGCCTGTGTAGTGATCAATCATTGCTTTA TAGTGATATAGCAGCAGTCTTCTGCATACTTTTAATTAAGTGATGCAGAGTTGATTACTCAGTTTGTGGAGTATTTTTAC TATTTAGTATATTTTTGGGTTTTGGGGGAGGAGAAGAATGAGGCCAATCGGAGATTATAAGAACTGAGAATAAAAGTGTT TCCCTTGCTAAATGGAAAAAAATCTAACCCACTGAATTGATTATTGATTATATTAAAGTTTCACAAATTTTAGGTCACCT GCAATGGTTCCTTGCCGTTTTCAGTTACTAGCATGAGGGTGACTTGATTGTTATATAAGAAAGACCAGGGTAGTACTGTG CAATGCTGAATGGAATCCATTCAACATTGAAAACTTTTTCTTTGGTGGTTTGTGGTGCTGTTTCTGGATTAGTGTATCAT ATTTTCCTATACGATGCTAATTAAGATATTGGATGGTAGACTTGCGTGAGTTTTTGAAATACTTACATAAGTATTTTTTT GGTATCTTGAAGCCCTTGAAAGTTTTCAATGCTTGATCAGGATACTAAGTTATAATGCTGGTTGTCGTGGTTGTTTTAAG AAACCATGGACATGTATTCATTTTTCTTTTTTACCTAGGGTTCTTATCTTGCTGCTCTCCCCCCTTTGTGTCTCCTTTCC TTTCTTCACTAACAGATCAAAAGACCTTTCTTTCCGGCAGGGGGAGGGGGGTGGGGGGTTGTTAAAAGATCTTATGTGTA ATTTTAGGAAGGACTTACAAGTTAAAATGGTTTTCCCTTATCCCTGATTATATATTTTGCTCTTTTCTGAGGAATATAGT AAATAATAAAATCTCTACTTTTTTGCATGATATGGATTGAATTTTCTGTTTGACCCTTCAAATACCAGCAAGTTGTTGGG AGGAAGTGTATCTAAATCAGCCCCCAAAAACCTTGTTTCTTCTTATTCATTTATGATTTTTGTAGCCATCGTGCTTTCTA TCCTAAAACTCTTCTCTCTTTGTCTACGTGTAGGCTTACCAAATATTGCAGTATGTGGAATCATATCAGAAAGAAAATAG GCTCAAATCCATGTCTATTGTACTCTGGGTGAGTTTATTGTTTGAATTTCTAGTGATATTTGAATTTCTACTGGAATCAG ATGTCCTTATAGTTTGAACTCCATGTTTCAATATAATGCAGTGACTGGAATGGAAGCAAGCTTGGACATGTTTACAAGTT TCTTAGGTCTCAGAGGTTTGATTCATCCTATGATATTGCTAATAAATACATTGACAGTTATGCAGATGCTCACAAGGTAA ATTATCTCACATTCTCACTAGTAGATAAAATTGTACGTATGCTTTGCTTTCAAAGTTAACTGGTTTTTATTTTCCATGGA TTTTTATTTTCCTAAATCTGCAGTAGGTTAGTCATCGAAATCCTAGAGGAAGTATCTGTGGTGTTGACTTCATTTGTATT TCCAATCCTAACCAAGCACTCAAACCCTTGAAGACAAGCTGGGCTGAAGTTGTTTTAACAATAATAAAGGTGAGTGTTTT TTGTTGTCTTATGTGATATACAATCATAGCCTCTAGAAATAGGTAATTAAAGCTGTTGTCCCTCAGGAGTCAATTATGGT GCTTATTTTTTTGGCTCACAAGTCAAATTCATCGTAATTTCCTGTAATTTCTCAAGATTTTATAATTAAGGCTTACGACC TCTAATATAGTAAGTTTCTATTTCGTAGATTGTTCTTTGGGTCAAACCCTTGCAACTTACCAAATAAAAAAGTACTAGAA ATAAGACTTTTTCTTTTTAAAATAACTCTTTAATCCGGCCAACATGCATTAATGATACTTTATTAGTAATTTTTTTTAAA GATACTTTATTTGTAATTATATATACTGGTCTAAATGAGTTTTACTAGGATTGTAATTGACCTTTTCATTTTCTTTGACG GAATAGGAGAATTTATGCATGAAATAACTAAATCATAGGCCCTAAATCAGCAAAATGTAGACAATGAAATAATTTTTCAC AATGCAATTGAACTTCGCAAGACAAAGATTTGAATGCCATTATTGCTGATTACAATTTTCCTGCAAGGAATAGTGTTCAT CCACTATATATAATAAGTTACCATTTCACCACTTTTCACATCAAAACTTTATTCGAGCTTCTGAATCACCTCATAGTTTT TTCCCCCACCAATATGGAAGGCCTATTTTCTGTGATTTTTATGTTGTTTGTTGCTGCTACACCTAGCTTGTATGCTAGAG TAACACCCAATGCAGGATCTAGCAACTTCAATATTGTTAACTATGGTGCAAAAGGGGATGGCCAAACTGATGATTCACAA GTATGTTTTTAGTATTTTTTTTTATATTTTCACATTATTTGATATAATTAAGTTTTAAATATTTATTATTAGGTTTTCAA ATTGAATCTGACACCATTCTAATTGAACTTTCCAAGGCTTTTGTGAAAGCATGGAATGATATGTGTGCTGCAACTCAAGG TGCCCCAACACTTCTCATACCCAAAGGGAAATCATTCATGTTGCAACCTGTGTCATTTAAAGGTCCCTGCAAATCTAACA ATGTTAACATTGAGGTAAACGAATATGAACCATGTTTTTACTAGCTACTAACATTTAGTAATGTTGTTTTACTAGCTACT AACATTATATACATTGTTTTGCTTGACAGCTTCAGGGCACTCTTGTTGCCCCTAAAAGTGTTGTTGCTTGGAAATGGGCA AATAATAATAAGGGAGCATGGATCAATTTCTCAGGAATAAATGGCCTTGTTATTAGGGGAGGAGGAACATTCGATGGGCA AGGTGGTCCATGGTGGGCCAAGTACTCTGATGATTCTGACAGGCCAAGTGTAAGTACTTGAAATACATAATACAGAATTT ATTATATTTTAAATAAGTGAACATGTCAAATTGCCTTATTTTTTGCCATTCAGTCCATAACTTTCTTTTTTCTTAAAAAA GTGCTTGATTGACAATGTTTTCAGGACTCACTATAAAACATATACTATTAAGGACTCTTTTTTCTAAAAATTAACTACAA TATTATTTGAATTAACTATGAAATTTGATTGACAATGTTTTCAGGCACTTCGGTTTAATAGCTGTAAGAATCTAGCCCTT AGTGCAACAAATCACATCAACAGCCCAAGAAATCACATAAGTATAAGTTCATGCAGTGGCTCTAGCATTTCCAATATTCA TGTTACTGCCCCAGAGGAAAGTCCTAACACCGATGGGATTGATATCTCAGGATCAACTAACATCCTCATTAAGGATTCTA CAATTCGAACTGGTATTTAATTAATATATTATACTCTTCATTTCATTTTCTATCCTACACCATCACTATTGCCATATATT TAAATTAACATGATTTGTTTATTTTCCTTAATTATTAATTATTATACATACAGGAGACGATTGCATTGCCATCAATGATG GTTCCTCTTTTATCAACATAACTGGTATTACATGTGGTCCTGGCCATGGCATCAGGTCAATTTCATTCATTTTGAGATTA TGCTATTGATATGCTTGGCTAAAATTTAAACTCACTTTGGTTTGTGTTGTTGATATTTAGTGTTGGGAGCCTTGGGAGAG ATAGAAAGTTTGAAACAGTAGAAGAGGTACATGTGAGAAATTGCATCTTCCAAGGAACCACAAATGGTGCCAGAATCAAG ACATGGCAGGTAACAAACAACTTAACAAACAGCTGACTCTAATTTCATTGAAATTCAGCCATTATTTGTTTGATTAGTCA AAAAAAAGACATTTGGCACTAGTTTTTTTATGAACTACTGTATATAAAGAAACAAGTGATTAAGCCACAATTATTTTATG TGTTTTTAACCAGGGAGGATCCGGGTATGCGAGGAAGATAACTTTTGAAGATATTATACTTGATGAAGCAGAGAACCCTA TCATCATTAACCAAAATTATAGGGCTTATCAACGTAATGGTCTTGCGGATGCAGTGAAAGTGAGTGAAGTTACTTTCCGT AACTTCACAGGAACCTCAGCTTCTGAGGAGGCAATCACACTGAATTGTGACCCTACCGTCGGCTGCACCGGCATTATATT AAATAAGATTAACATAAAATATGTATCAGCAGGGAAAAGAACACGTGCGTTGTGTAATAACGTTCGTGGGTCATTCTCTT TATGTAGTCCAAATGTTGTCTGTTCTTGACTTGAGATGTACTAGCCAATTAGGTTCTTGAAGTAGTAAATAGGACCCAGT GCATTTTGCTATCTTTTTGACAAAAAAAACCCAAGTATCATTTTCTAGTAAGGTTGACTTCATCTCTTGTACTTAGTTAT TTCCCTTTGTACTGGATTCTATATCTATAGTCCAGCAGGATTGGTTTTGTACTTTTGGGCCATTGGTCCAGTTTCAATGA AGTCCTTGATCCAATGTCAAAAGAAACATTGTTATCCTTGACAAGATGAACTTCTATAACTTTTGACCGGAAAAAAAGTT AACTTGAAACTTTTTATTAAGAATCAATGTTGCTAGCTAACTTATTG
CDS sequence (LotjaGi1g1v0302000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGTGCTGCAACTCAAGGTGCCCCAACACTTCTCATACCCAAAGGGAAATCATTCATGTTGCAACCTGTGTCATTTAA AGGTCCCTGCAAATCTAACAATGTTAACATTGAGCTTCAGGGCACTCTTGTTGCCCCTAAAAGTGTTGTTGCTTGGAAAT GGGCAAATAATAATAAGGGAGCATGGATCAATTTCTCAGGAATAAATGGCCTTGTTATTAGGGGAGGAGGAACATTCGAT GGGCAAGGTGGTCCATGGTGGGCCAAGTACTCTGATGATTCTGACAGGCCAAGTGCACTTCGGTTTAATAGCTGTAAGAA TCTAGCCCTTAGTGCAACAAATCACATCAACAGCCCAAGAAATCACATAAGTATAAGTTCATGCAGTGGCTCTAGCATTT CCAATATTCATGTTACTGCCCCAGAGGAAAGTCCTAACACCGATGGGATTGATATCTCAGGATCAACTAACATCCTCATT AAGGATTCTACAATTCGAACTGGAGACGATTGCATTGCCATCAATGATGGTTCCTCTTTTATCAACATAACTGGTATTAC ATGTGGTCCTGGCCATGGCATCAGTGTTGGGAGCCTTGGGAGAGATAGAAAGTTTGAAACAGTAGAAGAGGTACATGTGA GAAATTGCATCTTCCAAGGAACCACAAATGGTGCCAGAATCAAGACATGGCAGGGAGGATCCGGGTATGCGAGGAAGATA ACTTTTGAAGATATTATACTTGATGAAGCAGAGAACCCTATCATCATTAACCAAAATTATAGGGCTTATCAACGTAATGG TCTTGCGGATGCAGTGAAAGTGAGTGAAGTTACTTTCCGTAACTTCACAGGAACCTCAGCTTCTGAGGAGGCAATCACAC TGAATTGTGACCCTACCGTCGGCTGCACCGGCATTATATTAAATAAGATTAACATAAAATATGTATCAGCAGGGAAAAGA ACACGTGCGTTGTGTAATAACGTTCGTGGGTCATTCTCTTTATGTAGTCCAAATGTTGTCTGTTCTTGA
Protein sequence (LotjaGi1g1v0302000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCAATQGAPTLLIPKGKSFMLQPVSFKGPCKSNNVNIELQGTLVAPKSVVAWKWANNNKGAWINFSGINGLVIRGGGTFD GQGGPWWAKYSDDSDRPSALRFNSCKNLALSATNHINSPRNHISISSCSGSSISNIHVTAPEESPNTDGIDISGSTNILI KDSTIRTGDDCIAINDGSSFINITGITCGPGHGISVGSLGRDRKFETVEEVHVRNCIFQGTTNGARIKTWQGGSGYARKI TFEDIILDEAENPIIINQNYRAYQRNGLADAVKVSEVTFRNFTGTSASEEAITLNCDPTVGCTGIILNKINIKYVSAGKR TRALCNNVRGSFSLCSPNVVCS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 339 | 339 | 2.3E-107 | ||
| PANTHER | 2 | 341 | 340 | 4.3E-143 | – | |
| PANTHER | 2 | 341 | 340 | 4.3E-143 | – | |
| SUPERFAMILY | 5 | 341 | 337 | 3.84E-102 | ||
| Pfam | 8 | 329 | 322 | 3.6E-89 | ||
| SMART | 128 | 154 | 27 | 570.0 | ||
| SMART | 155 | 176 | 22 | 7.0 | ||
| ProSitePatterns | 185 | 198 | 14 | - | ||
| SMART | 208 | 229 | 22 | 140.0 | ||
| SMART | 269 | 296 | 28 | 6100.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0302000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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