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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0304000 |
| Transcript ID | LotjaGi1g1v0304000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD repeat domain phosphoinositide-interacting protein; TAIR: AT3G56440.2 yeast autophagy 18 D-like protein; Swiss-Prot: sp|Q0WPK3|AT18D_ARATH Autophagy-related protein 18d; TrEMBL-Plants: tr|I1JYD8|I1JYD8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0304000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:74167946..74170409) extracted from Lotus japonicus Gifu genome v1.2.
ATGATGGCAAGTACCCCCTCGTCCAAAGTGAGTTCGCCTGATTCAACATCTCAAGGAATATTTTCTACTTCAAGGATCAG AAACAGTGAAACCCCCAATGTTGGGGCTTCTCCTTCGGTTGGCCAGCTCAATGCAGATATGAATGGAAACGATGAAACAG ACTTGCTGTCAATATCATGGAATCAGGACTATGGTTGCTTTGCTGCTGGAACAAGTCGTGGTTTTCATATATATAACTGT GAACCTTTCAAAGAAACTTTCAGACGTGATTTAAAAAGTGGCGGCTTTAAAATTGTCGAGATGCTGTTCCGCTGCAATAT TCTAGCCCTTGTTGGTGCTGTAGCTAATTCCCATTATCCTCCCAATAAAGTTTTGATTTGGGATGATCATCAGAGCAGGT GCATTGGTGAATTCACATTTAAGTCTGAAGTTCGTGGCGTAAAATTAAGACGTGATCGAATTGTAGTTGTTCTTGAGCAC AAGATATATGTTTATAACTTCATGGATTTGCAGCTTCTTCATCAGATTGAGACTCTCGCGAATCCTAAAGGCTTGTGCTG TCTTTCATACCAGTCAAATACATTTGTTTTGGCTTGCCCAGGCCGCCAAAAAGGGCAGGTCCGAGTTGAACACTTTGGAC TGAATATGAAAAAATTCATCAATGCTCATGATTCCCAACTTGCATGCTTCACTTTAACAATGGATGGGCTCCTTCTTGCA ACTGCTAGTTTAAAGGGCACTTTGATTAGAATCTTCAATACAATGGATGGGTCACTTTTACAAGAAGTAGGTTACTACAC CATGGATTTAATTATTGTGATAAACCATTCTTATTTCTTCCTGCTTTTGTAGTTTCCATTTTCAGGAACTTTTATTTTCA CATCTGCATAGTGTAAGATGAATTGATTAGAAAGTGATATTTGAAACACTCATTTTATTAAAAGGTTCTCCATATTCCTC TTATAATGGATTTGAAGTGGGAGAACATAAACTTTATCCAATAGAATTGAATAACATCTTGTATATAAGGTACATTCATT ATTATAAGTTGTTTATCATATTGCATACCCTCTCTTCTTGATCATTTTCATATACACATAGGATGTGACAATTTCCTTCA CAACTTTTAAAAATTTCCTTACAGTAATAATGTTTTAGCATGTCTTATATTTTTATTCTTTGTACTACTTGTAAAAAGAA GCTTTTACACCTCAATTTGGGTGGTCCAGGAAAATTCTGAAAGTAGAACCTATTTTCAGGAGTAATTGGTTTTATCTTTA CAGATTTTGCTGCTTCATTTTCATGTTTTATCATCCTTTTCTCTTGTAGGTAAGAAGAGGGGTGGATAGAGCTGAAATCA ACAGTATAGCGCTGTCTCCAGATGTCCAATGGTTGGCAGCTTCAAGTGACAAAGGAACTGTTCATATTTTCAGCTTGAGA GTGAGAGTGTCTGGGGAGGATAGTTTAACACATCCAAACGCTGCTCAAGGCCCTGCACTGTTTCATCAGAATTCTTCAAC TTCGTTAGATCCCTTGATTTCTCCAAATACTGGTGCCAACCCCAATTCATCATTATCTTTCATGAGAGGTAATTAGATTT TCTAATGTAATGCTTAACACTTGAGAAATTATCACAATTTTGAGTTTCAACTTCCAATATTTTTGTCCAGTATGCCCAAA TACTTATCCAGGGAGCGGCATTGTGTGTGTGGTTTTTAAAGGATAAAAGTTGATGGAATCACTTGATTCACATTTCAGCT ATCTAAAGCCTCGTGCGTTTATGTAAGAGTTCTAGGTTTAAAATGTGATGATATGTGAGTGAAAAAAGATCATCCCCCTC CCCAGTCCTGATGATGAGGCTATGTGTGTGCCTGCTTGCCCATTTCCGATTGTTAATTCTTTTTTGGAAGGCAACTCTAG ATATATGACACATGATAAGACAATTTCTTGTGCTCCATAGAATTTACCTATAGATTTGTGAAGGGTAAATCTACGCTTTT TTCCACAAATATATATTAATCAATGGATTTGTGCATTAGTTGTGTTTTTTTGTATGAGTTGTGCACTTAGCATTACCCTT TTCAAAATCAAGTCCTTTTAAAGAATTTCTGTATGAATCTTCTCAGACAGAAACCCAAATATTTCAAGGGTGTTCTATAA ATCTACTCATGGTTTAGAAACTTGCTTTTAAGATGGAAATTGCACAATATTTATGCTTATCCTTTCTCTTTTGTGCTTAC CACTTTCCTTGATGACATTACAGGGATTTTACCGAAATACTTTAGCTCAGAATGGTCATTTTCACAGTTCCACTTGCCTG AAAAAACTCATTTCATTGTGGCATTCGGATCTCAGAACTCTGTCATAATTGTTGGCATGGATGGGAGGTATGTGTTTCTA TCAACAACTTAAAAGTTATTATGGACTTGTCATTTGGGTTCTTGGTTTTTAAAAATTGAATCCT
CDS sequence (LotjaGi1g1v0304000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGCAAGTACCCCCTCGTCCAAAGTGAGTTCGCCTGATTCAACATCTCAAGGAATATTTTCTACTTCAAGGATCAG AAACAGTGAAACCCCCAATGTTGGGGCTTCTCCTTCGGTTGGCCAGCTCAATGCAGATATGAATGGAAACGATGAAACAG ACTTGCTGTCAATATCATGGAATCAGGACTATGGTTGCTTTGCTGCTGGAACAAGTCGTGGTTTTCATATATATAACTGT GAACCTTTCAAAGAAACTTTCAGACGTGATTTAAAAAGTGGCGGCTTTAAAATTGTCGAGATGCTGTTCCGCTGCAATAT TCTAGCCCTTGTTGGTGCTGTAGCTAATTCCCATTATCCTCCCAATAAAGTTTTGATTTGGGATGATCATCAGAGCAGGT GCATTGGTGAATTCACATTTAAGTCTGAAGTTCGTGGCGTAAAATTAAGACGTGATCGAATTGTAGTTGTTCTTGAGCAC AAGATATATGTTTATAACTTCATGGATTTGCAGCTTCTTCATCAGATTGAGACTCTCGCGAATCCTAAAGGCTTGTGCTG TCTTTCATACCAGTCAAATACATTTGTTTTGGCTTGCCCAGGCCGCCAAAAAGGGCAGGTCCGAGTTGAACACTTTGGAC TGAATATGAAAAAATTCATCAATGCTCATGATTCCCAACTTGCATGCTTCACTTTAACAATGGATGGGCTCCTTCTTGCA ACTGCTAGTTTAAAGGGCACTTTGATTAGAATCTTCAATACAATGGATGGGTCACTTTTACAAGAAGTAAGAAGAGGGGT GGATAGAGCTGAAATCAACAGTATAGCGCTGTCTCCAGATGTCCAATGGTTGGCAGCTTCAAGTGACAAAGGAACTGTTC ATATTTTCAGCTTGAGAGTGAGAGTGTCTGGGGAGGATAGTTTAACACATCCAAACGCTGCTCAAGGCCCTGCACTGTTT CATCAGAATTCTTCAACTTCGTTAGATCCCTTGATTTCTCCAAATACTGGTGCCAACCCCAATTCATCATTATCTTTCAT GAGAGGGATTTTACCGAAATACTTTAGCTCAGAATGGTCATTTTCACAGTTCCACTTGCCTGAAAAAACTCATTTCATTG TGGCATTCGGATCTCAGAACTCTGTCATAATTGTTGGCATGGATGGGAGGTATGTGTTTCTATCAACAACTTAA
Protein sequence (LotjaGi1g1v0304000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMASTPSSKVSSPDSTSQGIFSTSRIRNSETPNVGASPSVGQLNADMNGNDETDLLSISWNQDYGCFAAGTSRGFHIYNC EPFKETFRRDLKSGGFKIVEMLFRCNILALVGAVANSHYPPNKVLIWDDHQSRCIGEFTFKSEVRGVKLRRDRIVVVLEH KIYVYNFMDLQLLHQIETLANPKGLCCLSYQSNTFVLACPGRQKGQVRVEHFGLNMKKFINAHDSQLACFTLTMDGLLLA TASLKGTLIRIFNTMDGSLLQEVRRGVDRAEINSIALSPDVQWLAASSDKGTVHIFSLRVRVSGEDSLTHPNAAQGPALF HQNSSTSLDPLISPNTGANPNSSLSFMRGILPKYFSSEWSFSQFHLPEKTHFIVAFGSQNSVIIVGMDGRYVFLSTT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 46 | 46 | - | – | |
| PANTHER | 13 | 392 | 380 | 2.1E-187 | – | |
| PANTHER | 13 | 392 | 380 | 2.1E-187 | – | |
| SMART | 40 | 79 | 40 | 190.0 | ||
| SUPERFAMILY | 52 | 298 | 247 | 3.66E-29 | ||
| SMART | 131 | 166 | 36 | 420.0 | ||
| SMART | 213 | 253 | 41 | 4.7 | ||
| SMART | 256 | 297 | 42 | 0.06 | ||
| Pfam | 272 | 296 | 25 | 0.0029 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0304000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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