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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0308900 |
| Transcript ID | LotjaGi1g1v0308900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Appr-1-P processing enzyme family protein; TAIR: AT2G40600.1 appr-1-p processing enzyme family protein; Swiss-Prot: sp|Q8P5Z8|Y3184_XANCP Macro domain-containing protein XCC3184; TrEMBL-Plants: tr|G7I3E3|G7I3E3_MEDTR Appr-1-P processing enzyme family protein; Found in the gene: LotjaGi1g1v0308900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:75039883..75042633) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTAAATGGGGTGGGAAATCTAATTCCCCGAACCAGAGTAGCAGACACAAACACAATACAAATACAAGCTTCTCCCAT TTCTGTTCAAATCAAAACCCTAAACCTCACAAATTTCACTACCCCTTCTCAACCCACACACCACCGTCGTGGTCACTGAA TGGACGCTCCGGCGAGGGCTTCCGCTTCATCCAACGGTGCAGTTCGCTTCCCTCTGTCTCCGACCACCGCATTGATCATT CAGCAAGGTGACATCACCCAATGGTCCATCGATTCTTCCTCCGACGCCATAGTATGCTCCTCTCTCTCTCTCTCACACAC TCTGATCCCTAACTTCCAATTCCAACTACAATCCATCACACTGCAATCTCAATGACTCAATCAATGTTTTCCCCCGTATA GGTAAATCCTGCAAATGAGAGAATGCTTGGAGGTGGCGGCGCCGACGGAGGTAATCAATTTCCAATTTTTCCAAACACTT TGATTATTTGAGCATAGTTTTGAAGAGAAAAGTAAAAATGAGGTGAAATTTTTGAACATTTGATCAGCTATACATAGAGC TGCTGGTCCAGAACTTCTTCAGGCATGCTACAGTGTTCCGGAAGTGAGGCGTGGCGTTCGCTGCCCCGTAGGGGAAGCGA GGATCACACCGTGAGTTATATTTTAGTTTCGCAGCTATTCTTAGTGTGATGAATGATGATTGATAGTGTAGATGGTTTCC TACTTGTTTTTGTTTGTATACTAATATGGGCACTCTACTTGTTGGTGTATGTATATGCAGGGGTTTTAGATTGCCTGTTT CTCATGTTGTTCATACTGTTGGACCAATCTACCATTCTAATAGTGACCCTGCTACCTCTCTGGCTAGTGCTTACAGGTTG TTGAATGATCTCTTGGTGCTGCTATTAAGTTATTGGTCTTTCTTCTTTGAATCAGAATAACAGGTTTATTCAGTTTGCTC TTGAATGAGATGTTCCTTTTTCGCAATTGATTTGCAGGAATAGTTTGAGGGTTGCAAAGGAGAAAAACATTCAGTATATA GCGTTCCCTGCCATATCATGTGGTGTCTATGGGTATGTTCACTTAAAAACGAAAGACCTTATCTCCATTGATGTGTTAAA CTTCCATATGCATGTGCTTATTAATTATTATTAATAATGATCGCACAGAAAGTCTGGCGGTAAAGTTGATGTTGGTTGTG ATGGTTTGGGATTTTACCTTATTGTCATTCATGGTAGAATCCTTTATGAAAGTCCTTTTTCTGGGTCTAAGTGATGTTGG TGGACTTATCATTTCCATTTTGGAAGGTTCTGTTTAGGTGCTTTTAAAGACCAATGCAGTTATCGAGTTCAAAAGTTCAG TCAGTGGAAATAAAATTTACTGAAAAAAATCATAAATTCATAAGACAGCAGCCTAGCCAATCACTTAATAGTGAATACCA TAACTATACTATATGTTCCCATGTCGAAATTCCCCTTGAACCTAATAAGTTCAATCTCCTGGCTCTCTTTACATTTCGGC AAGACCCTAAGCCTTGTTAAAATGCATCAAGTTTTCCTTTATCAGAAAGATGTTCTTATTCTAAATATGGTTCTGGTCTT TAATTGGGATATTGTTGACTGCCGCATCAGGATTTGATTTATTTTGAACTCCTTTAATCCTTTTTTTTCAGTTATTTAGC ATGTTCATTACTATTCTATAATCTTGGGTGATTTCAGATATCCTTATGACGAGGCTGCTACAGTAGCAATTTCTACCATC AAGGAGTTTCAAAATGACTTCAAAGAGGTATATTTCATTCCATTTGTTCCCTTCTCTTTATTTGGGTCTGAACATGAGGC GTGAAACTAATTAGTATAAATTTGGATCTGTAAGCTAAATTGAATTTTACTTTTCCAATTAGATATGATCATTTTGGGAC TTTGGGCTTCGTTTTACCTAGAATTTTGTCAGACTTGTTAACCTTGCTCATTAAAAATTGACAAATTAAGGCCCAAGCCT GGCTCTTTGAACCAAATCGTACTGAGTTCTCTACTCATATTTTTCTCTATATACACAAAACTTACCTTTACTATCTATTT TTATTTTTTCCTGCTATTTTTTCCTTGCTCCTTTGTTTTTCTGCTCACCTTTTTTTTTTGCTTCTGCTTGAGTGAATTTC TTTGTGGTGAGGCAATCAGTTGCGTATGTTGAAAGAAAGGAGATTTTAAGATTTGAATCACATAAAGTAATATTTCTATA GTTGGTGTTTCTAGAATATTGACAGTTCGTTATTTATTTCAGGTCCACTTTGTTCTGTTCTTGCGTGATATTTATGAAGT TTGGTTAAATAAGGCTAATGATTTGCTGAAAGATGAGAATTCTGCTCCATGAGCTACCTGTCTAAAGAATTGAGTACCAG AATCATCTAGAGTGCTGCAACAATGCATTATCAGATTTCAATCGTTCTACGTTAGAGAAATGTAAAAGCTGAATAACCCT GTACTTGAGAATGTAATCATTCTTTAGAGAATATCTAAGGTGACGCTGATTGCTATCTTATATTATATAATGTGATTGCT ATTTGCTAATGAGATCTTATGATGCTTCTATGTAAAATCAATGCGTATTTTTTTTCCTTTTTAGCTAGAGATTGAAATTA GATCCCGACCAAATGGGTGTAGGGTATTCAGAATGTTAGCCCTCTGAGACAAAATGTGAATTTTAATATTTGTACGGGTC ACAATGAAAATCCTTATAACCTTGAACTCCA
CDS sequence (LotjaGi1g1v0308900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGCTCCGGCGAGGGCTTCCGCTTCATCCAACGGTGCAGTTCGCTTCCCTCTGTCTCCGACCACCGCATTGATCAT TCAGCAAGGTGACATCACCCAATGGTCCATCGATTCTTCCTCCGACGCCATAGTAAATCCTGCAAATGAGAGAATGCTTG GAGGTGGCGGCGCCGACGGAGCTATACATAGAGCTGCTGGTCCAGAACTTCTTCAGGCATGCTACAGTGTTCCGGAAGTG AGGCGTGGCGTTCGCTGCCCCGTAGGGGAAGCGAGGATCACACCGGGTTTTAGATTGCCTGTTTCTCATGTTGTTCATAC TGTTGGACCAATCTACCATTCTAATAGTGACCCTGCTACCTCTCTGGCTAGTGCTTACAGGAATAGTTTGAGGGTTGCAA AGGAGAAAAACATTCAGTATATAGCGTTCCCTGCCATATCATGTGGTGTCTATGGATATCCTTATGACGAGGCTGCTACA GTAGCAATTTCTACCATCAAGGAGTTTCAAAATGACTTCAAAGAGGTCCACTTTGTTCTGTTCTTGCGTGATATTTATGA AGTTTGGTTAAATAAGGCTAATGATTTGCTGAAAGATGAGAATTCTGCTCCATGA
Protein sequence (LotjaGi1g1v0308900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDAPARASASSNGAVRFPLSPTTALIIQQGDITQWSIDSSSDAIVNPANERMLGGGGADGAIHRAAGPELLQACYSVPEV RRGVRCPVGEARITPGFRLPVSHVVHTVGPIYHSNSDPATSLASAYRNSLRVAKEKNIQYIAFPAISCGVYGYPYDEAAT VAISTIKEFQNDFKEVHFVLFLRDIYEVWLNKANDLLKDENSAP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 5 | 203 | 199 | 3.1E-62 | ||
| ProSiteProfiles | 12 | 197 | 186 | 27.991 | ||
| PANTHER | 13 | 198 | 186 | 3.5E-96 | – | |
| PANTHER | 13 | 198 | 186 | 3.5E-96 | – | |
| SMART | 24 | 162 | 139 | 1.4E-46 | ||
| SUPERFAMILY | 24 | 198 | 175 | 7.57E-55 | ||
| CDD | 25 | 194 | 170 | 1.34844E-82 | – | |
| Pfam | 45 | 162 | 118 | 2.6E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0308900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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