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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR043472
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We have found 19 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.768s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0308900.1
n.a. Appr-1-P processing enzyme family protein; TAIR: AT2G40600.1 appr-1-p processing enzyme family protein; Swiss-Prot: sp|Q8P5Z8|Y3184_XANCP Macro domain-containing protein XCC3184; TrEMBL-Plants: tr|G7I3E3|G7I3E3_MEDTR Appr-1-P processing enzyme family protein; Found in the gene: LotjaGi1g1v0308900 LjG1.1_chr1 75039883 75042633 -
3 domain predictions
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LotjaGi1g1v0599800_LC.2
n.a. DNA helicase; TAIR: AT2G44980.2 SNF2 domain-containing protein / helicase domain-containing protein; Swiss-Prot: sp|F4IV45|CHR10_ARATH Probable helicase CHR10; TrEMBL-Plants: tr|A0A072TXT9|A0A072TXT9_MEDTR Chromodomain helicase-DNA-binding-like protein; Found in the gene: LotjaGi1g1v0599800_LC LjG1.1_chr1 114415306 114428627 -
3 domain predictions
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LotjaGi1g1v0599800_LC.6
n.a. DNA helicase; TAIR: AT2G44980.2 SNF2 domain-containing protein / helicase domain-containing protein; Swiss-Prot: sp|F4IV45|CHR10_ARATH Probable helicase CHR10; TrEMBL-Plants: tr|A0A072TXT9|A0A072TXT9_MEDTR Chromodomain helicase-DNA-binding-like protein; Found in the gene: LotjaGi1g1v0599800_LC LjG1.1_chr1 114415306 114428782 -
3 domain predictions
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LotjaGi1g1v0599800_LC.8
n.a. DNA helicase; TAIR: AT2G44980.2 SNF2 domain-containing protein / helicase domain-containing protein; Swiss-Prot: sp|F4IV45|CHR10_ARATH Probable helicase CHR10; TrEMBL-Plants: tr|A0A072TXT9|A0A072TXT9_MEDTR Chromodomain helicase-DNA-binding-like protein; Found in the gene: LotjaGi1g1v0599800_LC LjG1.1_chr1 114415359 114420332 -
3 domain predictions
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LotjaGi1g1v0599800_LC.9
n.a. Helicase, putative; TAIR: AT2G44980.3 SNF2 domain-containing protein / helicase domain-containing protein; Swiss-Prot: sp|F4IV45|CHR10_ARATH Probable helicase CHR10; TrEMBL-Plants: tr|K7K2G5|K7K2G5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0599800_LC LjG1.1_chr1 114415685 114428481 -
3 domain predictions
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LotjaGi2g1v0297800.1
n.a. Appr-1-P processing enzyme family protein; TAIR: AT1G69340.1 appr-1-p processing enzyme family protein; Swiss-Prot: sp|A7T167|GDAP2_NEMVE Protein GDAP2 homolog; TrEMBL-Plants: tr|V7CH06|V7CH06_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0297800 LjG1.1_chr2 77242029 77250523 +
3 domain predictions
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LotjaGi2g1v0297800.2
n.a. Appr-1-P processing enzyme family protein; TAIR: AT1G69340.1 appr-1-p processing enzyme family protein; Swiss-Prot: sp|A7T167|GDAP2_NEMVE Protein GDAP2 homolog; TrEMBL-Plants: tr|A0A072UEM6|A0A072UEM6_MEDTR Appr-1-P processing enzyme family protein; Found in the gene: LotjaGi2g1v0297800 LjG1.1_chr2 77242651 77249723 +
3 domain predictions
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LotjaGi2g1v0297800.3
n.a. Appr-1-P processing enzyme family protein; TAIR: AT1G69340.1 appr-1-p processing enzyme family protein; Swiss-Prot: sp|A7T167|GDAP2_NEMVE Protein GDAP2 homolog; TrEMBL-Plants: tr|V7CH06|V7CH06_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0297800 LjG1.1_chr2 77242651 77249881 +
3 domain predictions
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LotjaGi2g1v0297800.4
n.a. Appr-1-P processing enzyme family protein; TAIR: AT1G69340.1 appr-1-p processing enzyme family protein; Swiss-Prot: sp|A7T167|GDAP2_NEMVE Protein GDAP2 homolog; TrEMBL-Plants: tr|V7CH06|V7CH06_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0297800 LjG1.1_chr2 77242651 77249881 +
3 domain predictions
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LotjaGi2g1v0297800.5
n.a. Appr-1-P processing enzyme family protein; TAIR: AT1G69340.1 appr-1-p processing enzyme family protein; Swiss-Prot: sp|A7T167|GDAP2_NEMVE Protein GDAP2 homolog; TrEMBL-Plants: tr|G7JXV5|G7JXV5_MEDTR Appr-1-P processing enzyme family protein; Found in the gene: LotjaGi2g1v0297800 LjG1.1_chr2 77244157 77249881 +
3 domain predictions
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LotjaGi3g1v0327400_LC.1
n.a. Leucine aminopeptidase, putative; TAIR: AT4G30910.1 Cytosol aminopeptidase family protein; Swiss-Prot: sp|Q6K669|AMPL2_ORYSJ Leucine aminopeptidase 2, chloroplastic; TrEMBL-Plants: tr|A0A0B2SEX9|A0A0B2SEX9_GLYSO Leucine aminopeptidase 3, chloroplastic; Found in the gene: LotjaGi3g1v0327400_LC LjG1.1_chr3 69514137 69519612 +
3 domain predictions
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LotjaGi3g1v0327400_LC.2
n.a. Leucine aminopeptidase; TAIR: AT4G30920.1 Cytosol aminopeptidase family protein; Swiss-Prot: sp|Q6K669|AMPL2_ORYSJ Leucine aminopeptidase 2, chloroplastic; TrEMBL-Plants: tr|A0A0B2SEX9|A0A0B2SEX9_GLYSO Leucine aminopeptidase 3, chloroplastic; Found in the gene: LotjaGi3g1v0327400_LC LjG1.1_chr3 69514158 69519556 +
3 domain predictions
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LotjaGi3g1v0327400_LC.3
n.a. Leucine aminopeptidase, putative; TAIR: AT4G30910.1 Cytosol aminopeptidase family protein; Swiss-Prot: sp|Q6K669|AMPL2_ORYSJ Leucine aminopeptidase 2, chloroplastic; TrEMBL-Plants: tr|A0A0B2SEX9|A0A0B2SEX9_GLYSO Leucine aminopeptidase 3, chloroplastic; Found in the gene: LotjaGi3g1v0327400_LC LjG1.1_chr3 69514298 69519493 +
3 domain predictions
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LotjaGi5g1v0023700.1
n.a. Appr-1-P processing enzyme family protein; TAIR: AT2G40600.1 appr-1-p processing enzyme family protein; Swiss-Prot: sp|Q8P5Z8|Y3184_XANCP Macro domain-containing protein XCC3184; TrEMBL-Plants: tr|G7I3E3|G7I3E3_MEDTR Appr-1-P processing enzyme family protein; Found in the gene: LotjaGi5g1v0023700 LjG1.1_chr5 4149703 4170126 +
3 domain predictions
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LotjaGi5g1v0023700.2
n.a. Appr-1-P processing enzyme family protein; TAIR: AT2G40600.1 appr-1-p processing enzyme family protein; Swiss-Prot: sp|Q8P5Z8|Y3184_XANCP Macro domain-containing protein XCC3184; TrEMBL-Plants: tr|G7I3E3|G7I3E3_MEDTR Appr-1-P processing enzyme family protein; Found in the gene: LotjaGi5g1v0023700 LjG1.1_chr5 4149703 4170130 +
3 domain predictions
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LotjaGi5g1v0023700.3
n.a. Appr-1-P processing enzyme family protein; TAIR: AT2G40600.1 appr-1-p processing enzyme family protein; Swiss-Prot: sp|Q8P5Z8|Y3184_XANCP Macro domain-containing protein XCC3184; TrEMBL-Plants: tr|G7I3E3|G7I3E3_MEDTR Appr-1-P processing enzyme family protein; Found in the gene: LotjaGi5g1v0023700 LjG1.1_chr5 4149706 4169453 +
3 domain predictions
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LotjaGi5g1v0023700.4
n.a. Appr-1-P processing enzyme family protein; TAIR: AT2G40600.1 appr-1-p processing enzyme family protein; Swiss-Prot: sp|Q8P5Z8|Y3184_XANCP Macro domain-containing protein XCC3184; TrEMBL-Plants: tr|G7I3E3|G7I3E3_MEDTR Appr-1-P processing enzyme family protein; Found in the gene: LotjaGi5g1v0023700 LjG1.1_chr5 4149729 4169496 +
3 domain predictions
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LotjaGi5g1v0023700.5
n.a. Appr-1-P processing enzyme family protein; TAIR: AT2G40600.1 appr-1-p processing enzyme family protein; Swiss-Prot: sp|Q8P5Z8|Y3184_XANCP Macro domain-containing protein XCC3184; TrEMBL-Plants: tr|G7I3E3|G7I3E3_MEDTR Appr-1-P processing enzyme family protein; Found in the gene: LotjaGi5g1v0023700 LjG1.1_chr5 4149749 4154346 +
3 domain predictions
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LotjaGi5g1v0162600.1
n.a. Transcription factor bHLH140; TAIR: AT5G01310.1 APRATAXIN-like protein; Swiss-Prot: sp|Q9M041|BH140_ARATH Transcription factor bHLH140; TrEMBL-Plants: tr|K7K399|K7K399_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0162600 LjG1.1_chr5 41773907 41780331 +
3 domain predictions
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