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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0312400 |
| Transcript ID | LotjaGi1g1v0312400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Programmed cell death protein 2-like protein; TAIR: AT5G64830.1 programmed cell death 2 C-terminal domain-containing protein; Swiss-Prot: sp|Q5ZID2|PDD2L_CHICK Programmed cell death protein 2-like; TrEMBL-Plants: tr|A0A0S3REK6|A0A0S3REK6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0312400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:75640211..75644023) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAATTAAATGTGTGGGAGGATGAAGACTATTGTCGATTTGTAAATAGACTAAGGTACATAGATTTTTCACTTTATGA GTTGAACGTTGTCGTTTACATAACTAAACCCTAGTACCGCCCTCCCATCATCAGCAAGAAGCGCCGTTCAGCCGGTTATC GGAAGAAGGAAGCGCCGTTCAGAATGGGCGGTGCAGTTTTGCTCGGCATGCCGGGGCCATGGGCTGACGACTATCGCGAA CCTTCCGATCCCTACACAACCAAAATCGGAGGCCTCCCTGTAACTCTTCAAACTCCACTTCATCTCTCAAAATTGGAATC AATCATAGTGAATTAACATGAAAAATTCTGTGATGTTTGAACCATTTGATTACCTTGCTCTTGCAGGATTGGCCCATTCC CATCAATGGCGATTTGCTCCGGTGCGGTGGTTGTGACTGCACACTCTGCCTTGTAGCACAGGTTTATGCTCCACTCCCGT CATCTCAGCATCGCGCTCTTTTCGTTTTGGGTTGTCTTTCGCCGAAATGCGGAACCCGCTGGCGAGTTTTTCGAGTTCAG AAGAATGGTGACGATGTGGAGAGCTTTAAGCACAGCGAGGTTCAGCTTCAAAATGCTGAATTGTGCGAAGATGTTGATGA AGATGAAGGTGAAATGGATTTGGCGCAACTGGGCAAGGCGCTATTTGAAGCTGGGACTTTGGCTGCTTCTAATAGTAAAA GCAAGAAACCAAGGAGAAGAAGACAACACAAATCCTCTGCTGCTTGTTCTCCATGTACAGCAGCAGCAGCAACTCTAGTT TGTGATGATAATCATATTGATATGCCAGGTATGATATATGATAGTGCCTTGATATGATATGAAGAGTTTAATAACTTTAT GTATGCACTGATATGTGATTAGGTTTCATTATCTTGACACATAATAATTAAATTGGAGAGATGTGATTGGCGTATATTAG TTAAATTAGTTAAATTTGTACTGACTTCTAATTATCCACAAATATGGAAAATAAAGCTGATCCTTGTTACTTAAATTATG TGAACCTATGTGGTTCTTTGTGAAGAAATCGGAATGTTTCTGAAAATATAATGAGGGGAAAATGTTTGTGAATTTTTAAT TAAGTTGAAACACAACCAAGGGAAATTTGTTGGTTGACTTGGATATGTCTGTGTCATGATTCCCTTGTTGCAAATAACAC ATCAATTGTTTTTTTTCCTCGGAAAGTGTTTAGTAGATCACCGAGGTGCTTAGACACCCAAAGAGAGAAAGGAAGATAAT AGAGAGAAGTAATGAATGTGATATATGATGTCTGATATGTTAAGAAGTGAAAGATAGAGGGAAAAATGGGGTGTTTGGAC TGTTGGTGGTTTATGTATTATAAGTATAACTGAATTTTCCCTCACGCAGAATGATATTGCAACGTGACTGTTCTTTGTTG AACTATTGAGCTTGTAGTATTGTGAATTTTGTGCCAATATTGTTGTAATTGGTTTTTGTTTTGGTTATTTTCAGTGGTTC CTTGCTTTTATATGTACACACAAGAAGAGCCATCTACAGGGGATCTGAGTTCTATATGCTCTAACTATGCGTCGCTTTCT ATTAAGGAGAACAAAAGTGATGTTGAGGATCATTCAGAACCAGAAGAATCCTGGGAAAAGGAACGTTATGAATATGATAA AGCGTTGACTGCTGATAGAACGTACCTCAAGTTCAAGAAACGTTTGGATGCATATCCTGAGCAGTGTTTCCGGTACGTGA CAAATGACGCTTTGGGGTGAACTGGACATCGAAATGCACCTGCCCCGCCCTTATCACATATTATGATCTCAATCTGGTTT AAATTACTGGTTAAGGATTCAGAATAGTTAATTGTCATCTTTATAAATGAAAGAATTATAGAGACTAGAGCAACAGCTCA AGGGTGGTGAGGTTGGCTTGTAGAATTGGAGAGTGTAATGTATGATTCTGCTGTAGCTGTTAAATACTGATCAAAGAGGC TGTTTGCTCAACCTTCACTAGAGTCTAGAGATATATAATTCTAGTCATTGTACAAATTGGGAGTTGCTATTATCTTACTG GGCTGGGATTTATGAATATGCAATAATAATTATGTCAATCCACCTGAGCTGAGGAAGCTGTAGAGAAAGTTTGGTTTCTC TATCCACTTCTCTTTCTCTCTCTCTATGGCTCCCTTTTGATGAGTGGGAGGCATACTAGCTGAGGGTAATTTAATACATT AATTGATCATGCATCCAAAGTCCAAACTATCATTCTTTTATGTATACTTTTCAAAGCATAAAGAATCTTTCTTTTTCTGT GCTACACTCCCCCTCCCTGTTCTCTTCCCTCCTATTTTTTGGGAGTAGAATAAATTTTTATTATTCCTTTGTGCAGATAC GCATATGGTGGGAAGCCAATTTTAGCTGCAGCTGATGAAATAAACCCTGGCAGCTGCACGCTCTGTGGCAGACCAAGGCA ATTTGAGATGCAGCTAATGCCTCCGTTACTATACTTTCTACAGGAAGCAGTTGATGAGGACCAAAGACAGATGTTGGAAA ATTGGGATTGGATGACCCTTATTGTATATACGTGCTCTGAGGTTGGTATTCTGTCATTGCTATTTTTTTAGTTTTCTCAA TAAACTATGCACTGCCCTTTTTCAATTTTGACAATATAGGAAAGGTTAAGTAGTAAAAGAGCTGTCAGATAGCAATGGTA TCTGTATTGTGTGCCACACTGGTTATATTAGTCAAAATGCTTACTCGACAGGGACAAGAAATAGATGAATTTGCTTGCTT AGGTGGTTTTACTTGTTAAACACTGCACTAACCCTCCTGAAATTTATTGATAGTTCATCTCCCAACCTTGTTACCCCCTT CATTTATCTTAATTGTTTTAGTTCCTCCTGTTTAACATTCATGTTTTCTTGTTTTCACCACTATCTTCATCGTAATTCAT TGAATGGGAGGATATATGTTTTGATGCTTATAAAACGATTTGACCATGAAAGTTGTTTAAGCTTTGTCTGAATAATTCAC AGCTGTGGACAGCTACTATCTTGGAGAATTGTTCTTTATTTACTGGAAGAATGTAGGTTTAATTCTTTGTAGAGAATATA TATATTTGGTGAATTTTTCCTTTTGTGCTTGTGCCTTGATTTTCTCAGAGTTGTTGTGAAGAGACTGAACTAGCGAAGTC CAATAGTAAGGGGTGGATTGTAGCAGAGGAGGCTGTTGTGGCTCAGAATGAGGAATCCTTGCCTATTCAGCTTGGCTATT TCTCGTGATTGCTGGTGTTGGTGTAAGAATACAATATGTTTCATTTATAGTGAAAGCTTGAAAAGTTTGCAAATTTGAAG GAATTGAGAAAATTGTAGCTTAATCAAATAGAAGGAAAGTTATGTTACTTAGTATCGTTGTATTCTACAATGAATGTCTG TTGAGAGTAACAAGGTAGATGCTGCATCCATTACCTTCCAAAGGTCCTATAGCTAGAGGTATAGAGACAGAAAAACTACA AGTCAAATCATTGCAAGAGACTTAAATTTAAGTGGTTGTTAATCTCTAAATTGAATACATGATTGAGTTTTATGGTGTTG TATGATCCATATAGTTGACCTCACTGACCTCACATAGAGGGAAAAAGCTTAGTTATTTATAATTTTGAAGCTAGCTTTCT AGGCTTTAAAATCGTGGAACTCTCAGATAAAGAAGAGTCTTACTAGTCCTGTGCTAATGGCCGTTCAAGTACTCATTCAT GACCGCATATTAATTTAAATGATTGTTTATTGAAGTTGTAGGTGAATACTCCC
CDS sequence (LotjaGi1g1v0312400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCGGTGCAGTTTTGCTCGGCATGCCGGGGCCATGGGCTGACGACTATCGCGAACCTTCCGATCCCTACACAACCAA AATCGGAGGCCTCCCTGATTGGCCCATTCCCATCAATGGCGATTTGCTCCGGTGCGGTGGTTGTGACTGCACACTCTGCC TTGTAGCACAGGTTTATGCTCCACTCCCGTCATCTCAGCATCGCGCTCTTTTCGTTTTGGGTTGTCTTTCGCCGAAATGC GGAACCCGCTGGCGAGTTTTTCGAGTTCAGAAGAATGGTGACGATGTGGAGAGCTTTAAGCACAGCGAGGTTCAGCTTCA AAATGCTGAATTGTGCGAAGATGTTGATGAAGATGAAGGTGAAATGGATTTGGCGCAACTGGGCAAGGCGCTATTTGAAG CTGGGACTTTGGCTGCTTCTAATAGTAAAAGCAAGAAACCAAGGAGAAGAAGACAACACAAATCCTCTGCTGCTTGTTCT CCATGTACAGCAGCAGCAGCAACTCTAGTTTGTGATGATAATCATATTGATATGCCAGTGGTTCCTTGCTTTTATATGTA CACACAAGAAGAGCCATCTACAGGGGATCTGAGTTCTATATGCTCTAACTATGCGTCGCTTTCTATTAAGGAGAACAAAA GTGATGTTGAGGATCATTCAGAACCAGAAGAATCCTGGGAAAAGGAACGTTATGAATATGATAAAGCGTTGACTGCTGAT AGAACGTACCTCAAGTTCAAGAAACGTTTGGATGCATATCCTGAGCAGTGTTTCCGATACGCATATGGTGGGAAGCCAAT TTTAGCTGCAGCTGATGAAATAAACCCTGGCAGCTGCACGCTCTGTGGCAGACCAAGGCAATTTGAGATGCAGCTAATGC CTCCGTTACTATACTTTCTACAGGAAGCAGTTGATGAGGACCAAAGACAGATGTTGGAAAATTGGGATTGGATGACCCTT ATTGTATATACGTGCTCTGAGAGTTGTTGTGAAGAGACTGAACTAGCGAAGTCCAATAGTAAGGGGTGGATTGTAGCAGA GGAGGCTGTTGTGGCTCAGAATGAGGAATCCTTGCCTATTCAGCTTGGCTATTTCTCGTGA
Protein sequence (LotjaGi1g1v0312400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGAVLLGMPGPWADDYREPSDPYTTKIGGLPDWPIPINGDLLRCGGCDCTLCLVAQVYAPLPSSQHRALFVLGCLSPKC GTRWRVFRVQKNGDDVESFKHSEVQLQNAELCEDVDEDEGEMDLAQLGKALFEAGTLAASNSKSKKPRRRRQHKSSAACS PCTAAAATLVCDDNHIDMPVVPCFYMYTQEEPSTGDLSSICSNYASLSIKENKSDVEDHSEPEESWEKERYEYDKALTAD RTYLKFKKRLDAYPEQCFRYAYGGKPILAAADEINPGSCTLCGRPRQFEMQLMPPLLYFLQEAVDEDQRQMLENWDWMTL IVYTCSESCCEETELAKSNSKGWIVAEEAVVAQNEESLPIQLGYFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 358 | 358 | 3.7E-139 | – | |
| Pfam | 182 | 353 | 172 | 6.5E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
Expression pattern of LotjaGi1g1v0312400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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