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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR007320
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 5 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.653s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v1219090.1
n.a. PREDICTED: programmed cell death protein 2-like [Glycine max] gi|356509030|ref|XP_003523255.1| chr1 14846124 14849608 +
2 domain predictions
1 GO term
Lj6g3v1966510.1
n.a. PREDICTED: LOW QUALITY PROTEIN: programmed cell death protein 2-like [Glycine max] gi|356542551|ref|XP_003539730.1| chr6 22554601 22557815 -
2 domain predictions
1 GO term
LotjaGi1g1v0312400.1
n.a. Programmed cell death protein 2-like protein; TAIR: AT5G64830.1 programmed cell death 2 C-terminal domain-containing protein; Swiss-Prot: sp|Q5ZID2|PDD2L_CHICK Programmed cell death protein 2-like; TrEMBL-Plants: tr|A0A0S3REK6|A0A0S3REK6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0312400 LjG1.1_chr1 75640211 75644023 +
2 domain predictions
1 GO term
LotjaGi1g1v0641900.1
n.a. Programmed cell death protein 2; TAIR: AT4G02220.1 zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein; Swiss-Prot: sp|Q16342|PDCD2_HUMAN Programmed cell death protein 2; TrEMBL-Plants: tr|C6TKD7|C6TKD7_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0641900 LjG1.1_chr1 119946200 119951126 +
2 domain predictions
1 GO term
LotjaGi6g1v0314800.1
n.a. Programmed cell death protein 2; TAIR: AT4G02220.1 zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein; Swiss-Prot: sp|Q2YDC9|PDCD2_BOVIN Programmed cell death protein 2; TrEMBL-Plants: tr|C6TKD7|C6TKD7_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi6g1v0314800 LjG1.1_chr6 63301376 63306158 -
2 domain predictions
1 GO term