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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0314600 |
| Transcript ID | LotjaGi1g1v0314600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Alba DNA/RNA-binding protein; TAIR: AT1G76010.1 Alba DNA/RNA-binding protein; Swiss-Prot: sp|Q9BUL9|RPP25_HUMAN Ribonuclease P protein subunit p25; TrEMBL-Plants: tr|G7JAE0|G7JAE0_MEDTR Rpp20 subunit of nuclear RNase MRP and P protein; Found in the gene: LotjaGi1g1v0314600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:75957398..75960638) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATAGGTATCAGAGGGTGGAGAAGCCCAAGGCAGATAGTCCTATCAACGAGAACGAGATACGCATTACCAGTCAAGG AAGGATGAGGAATTACATCACCTACGCCACCACTCTCCTTCAGGTAATCTATCCTTATCAGATTGTTAACTGCTTCAATT TGTTTCGTGAAATTGTTAGAGATTTGAATTATTTACACGAGTTTTGAATAAAATCTCACACACAAGTCACTGATTGGAGT GAGTAGTGACTAATTGAAGCATGACATCGTATGAAAACATAAACAATGAGAAGAGTTAGTTGAAAAACGGTTATTAGGTA AAGAATCTGATTACAGAAAGGGTGTATTGAACTTTTCGGCAGCAAAATTGGTGAAGAAAATGGTTAAAATCGCAACGAGT TTACGAGATTGATGAAAATTTTAGAGAGACAATAGATTGAGAGAGTGAAAAGTATGTGAGTGATAGTATTTTTGTTGGTA GGGGACAGTGATTTGTATCTGACATGTGGAGTCATAAGTTAAGGGAATTGTTTCTTCCTAAAGTTTTGCTACTTTGCAGA AGAACTGCTAACCAGACTTTCTATTATATTTTTCTAAAACTTTATGTTTTTCTCAAAACTTCTTCCTAATCGTATATTAA CCCCTGCACTGGACACTAGTGGAAATTTAAAGGATAAAGTATCTTTAGGAAAATTACATTCATGCAGGTTCGTGAACAAA AAAAAAAATTACATTCTGTGAACTATCTTTAGGATATTCATTTTCCATCTTAGTCTGAGGCAGAACCTCTTTAGGATAAC ATTTTCCCTCTTGGGCAGTCCAGTTTTCTCTGTATATTTTCATTTTTACTTTGTTTACTTAATCATTTTACATTGATTTT CTGTTGGTGTGAGGATTTTACCTAATATTTTGTTAAATCTGATCCAAACATGCAAGTTTCAGTTTATCTAGAATCAACTA ATATTTTGCCTTTTCCTTTTTTATGTTTCTTATTGCTCTGTATGTATTTTATGCAGGAGAAGGGATCTGATGAAATTGTT CTCAAAGCAATGGGACGTGCAATAAATAAGACTGTAATGATTACTGAGCTGATCAAGGTGGGAGTGTAGATATCTTAACG GAGTATGTGGGTTGGCATTTGCTTATCATACTTTAGTGACTTTTTTGTATTCTTGTTTCAGAGAAGGATTGTTGGTCTGC ACCAGAACACTCTGATTGGATCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCCGTATGTATTG TTGTTTCTTCTATGCTACCCCATCAACACTTAATTTCTGTGTGCATGGGAGTGATTATTTTGTTTTATTTGTTTTACTTG CTCAGTTTGGAGACTACTCGCCATGTTTCTATGATCACAATTAACTTGTCAAAGAAAGAACTGGATACATCCTCCACAGG GTAAGAACTTTATGTTTTAATGGCAACATAGATGTTTTAAGGCAAGCTGCTAGTTTACTAGTAAGATTGGCTTAATTAGT GTTTTCATAAAAACCGTCTTTGTGAGTTTGCTAAGCTGTACTCGTCAATAATTTTTTTTACTCTATTCTTCTGGTAAACC ACTTTGATGATGTTTATTCATTTTTTATAACCAATATGGTCATAGATTGGTAAGCCATACCTCCTTGCTTTTGCAGTTCC ACAAGTTTCAAGGTCCAGATAAAGTTCTAAAAACTGTATTTTATCATATTGTGCCTGTCTGAGATAATTTAAATATGTTA TTGTCAGTTAGTCACACTAGCATTATATAGCTTGTCGAATTGGGAATGAGATAGGACGAAGAGGTCAGGTTTGACAGCTC GTATTTCAAACATAATTTCCTAGTTTCTAAAAAATTTAACACCATCTTAAATTTATCACAAAAGTAACCCTTTATCTCGT AAAATCTGAACAAGCGTTGTGCATTATACTAATTAGGTCAGTATAAGTTCATTTAAATTGACTTGTCATGTTTCCTTGTT TGACATTTGACTTTAACTTTGTATTTCAATTGCTGAGTTGAGGACAATGGAACATATTTAGATCCTTGATTTCAAGGAGG AGTGAAGTAAATGCTATGTCTATCGTGCTGTTCTACTTATGTTATCTGGTTTTCATGCAGACTGATGGGACAGTTCGGAT TTGTTAACTCTGCAGTCTAATAGTTTGCGGTGTTTATTTATTTGCACTCTAATTTTTGGCTCGTGCTAATTGATTCTATC AAACCTTAATATAAATATTAAGGTCCAGTTATTATTTTAAAGTCTTGTTGTGTTCTGCATTGTGTTATAACTTAGTAAGT TACTGGAATATTGATATATGTTCTACAAGCAGATTTTTACATGTGCTCAGTTGTATTGACCAAAAGGCTTTTCCCCTGCC TCTGGTGTAAAACTGATTGAGTTTTTGTGAAGTTATACCCTCTGTTGGAAAGAATTAATTTTCATCCTCATGCAGATACC AACCTCCTCTTCCTGCTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGATGGAGGTGAGTTAGTTATTTTCTTTTAA TATTTCAAGAGAGTGAAAAACTCGTGTGATTATTTTGGCATGCTTATTTGCTTACCATAATTTGATGTGATGCAGAAGGC TCCCCAAGGATGCGAGGAAGAGGGCGTGGTCGTGGAAGGGGTCGGGGTAGAGGTATTGTTATGCACTTTGTTTCACTTAT TTCACTGTAGTTGGCTAAAGATTAAAGATTGATTCTGAATTGTTTTTTTCAACTCCTTTATTCTGTTGTGGTTTCTTTTA AATTGCATAAGTTGCTTATAAGGATACAATATTTTCTACTTAGGATTTTACAATAATGGGGGTATGGAATATGGTGGTGG TGATGGTTGGGACGGTGGACGTGGCTATGGTGGCAGAGGCCGTGGCTTTGGTCGTGGCAGAGGTCGTGGTTTCCGGGGAC GAGGACGGGGAGGCTATGGTGCCCAGCCAGTTGGGTACTATGACTATGGTGAATATGATGCACCACCTGCCCCACGTGGT AAGCATGCAACTTCAATTCTTATATTTTGCTGTGCTATTTGTGTTTGCATGGTGCCTCTTTTAAATCAAGCTACCGATAA ATGTCTCTTCTATTGAATTCACCAACTTTTTCCATGTCCTTTTAATTTCCTCTGCACCCTGTATTCAAGCTACTGGAGTG GCATGGTAGTAATTTTTGTTTGATGGTTTTGCAGGACGAGG
CDS sequence (LotjaGi1g1v0314600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATAGGTATCAGAGGGTGGAGAAGCCCAAGGCAGATAGTCCTATCAACGAGAACGAGATACGCATTACCAGTCAAGG AAGGATGAGGAATTACATCACCTACGCCACCACTCTCCTTCAGGAGAAGGGATCTGATGAAATTGTTCTCAAAGCAATGG GACGTGCAATAAATAAGACTGTAATGATTACTGAGCTGATCAAGAGAAGGATTGTTGGTCTGCACCAGAACACTCTGATT GGATCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCCGTATTTTGGAGACTACTCGCCATGTTT CTATGATCACAATTAA
Protein sequence (LotjaGi1g1v0314600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDRYQRVEKPKADSPINENEIRITSQGRMRNYITYATTLLQEKGSDEIVLKAMGRAINKTVMITELIKRRIVGLHQNTLI GSTDITDTWEPLEEGLLPYFGDYSPCFYDHN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 98 | 98 | 6.7E-66 | – | |
| PANTHER | 1 | 98 | 98 | 6.7E-66 | – | |
| Gene3D | 14 | 100 | 87 | 7.6E-28 | ||
| SUPERFAMILY | 16 | 93 | 78 | 3.14E-23 | ||
| Pfam | 19 | 83 | 65 | 4.5E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0314600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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