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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0314800 |
| Transcript ID | LotjaGi1g1v0314800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Citrate-binding protein; TAIR: AT3G09800.1 SNARE-like superfamily protein; Swiss-Prot: sp|Q39962|CBPR_HEVBR Citrate-binding protein; TrEMBL-Plants: tr|A0A067EDW8|A0A067EDW8_CITSI Uncharacterized protein; Found in the gene: LotjaGi1g1v0314800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:76086247..76087921) extracted from Lotus japonicus Gifu genome v1.2.
AGAGTAGAGTAGGTATTATATATAATTTAATTATTCAATTGAGAAGTTTGAACTCTGAAGTACTCACACTTCCTCACTCC TTCAAACACTCAGCATATTTATACATTCTCTAATTTGATCAAATGATCCCATAGACTACTTCAAATTCAAATAGGGAATC CCAATTTATATATCTTCAATCTAGGAAGATGAGATATATGTGCCAGGCCATGGTTGCTCTTTTTAACTTCCTTGTTTGTT GTTCATTCATGCATGCAGCAAGAAGCTGGCCGGGGGTGGACCTAACCTTTGGATTCAATGAAGTTCCTTTGAACAGCTCC AACCTTGTTATTCAGAAGCCTTATGATTTGCCTGAAAGCGCTCGCTATAGCTTTGTCTATGGAGTACACAAGCTGTGGGT GTATTCCACCGATAAACCTCACTCCGTAACTAGCAAAACCAATCCCCGAACAGAAATCCGTATTACAGTAAGTAGTAAAC CTATTTTTATTGAGATTTCTCGCATTGATTTGAAATATGGTTAGATATGTAATATGTTAGTGTATAGTATAATTCATGTG GCTCTTACCTAAGCTTTTGGATAATTTGTAACTTGACATGAGACATGGTATAGATTCTCTATGACTAATTAAGTGGTCTA GAGTTCGATCATTGTTGCCTCATAATTCTAATTAAAAGTTAAATTTCAGCCCATGATAGGTGAGTTAGTATATTATTCAT GGACTATTGCGGGATAAACATCACAGAAATAGTTTAATATTATATTCTAACAAGATAAGTGTTTATAAAAGGTAAAATAA CTATCGACATAGCTAGTATTTAGGAGAGTTAAATCTTCTAGATTTGCTTTACTACTCTACTCCAATTTCATCTTCAATTA ATTATATTCCTTCCCGTAAAAGTTCAGAAGTGACTAACTAATTATTACAAAATGACCCCTTCTAATTTCTAGAAGTGATC CTCTGAACTTTTACAATCTCCATGATACTCAGAAAAATAATGCTATCAACTTAACACACACTTTTAATTAATTTGGAACC TCCAAAAGATCTTGGATTATCATATGTTTTAATCAAACAGTTCAAATCCAAAGATCTGAAATGAAGCCCACAAATATTAT TGTGTATCTCGCTTGTCAAATTTGTTCGCTTACCATTTCAGGGCTATGATTATTCATCCGGGGTGTGGCAATTTGAAGGG CATTTCTTTGTGCCGGATTGTACTTCCGGCGTGTGCATTATGCAAGTGTTTGGGGCAGCTCCGCCTCATGCCACCACTCT TATGCTCAGAACCTACAATGGTTCACTTTCATACTATCGGACTCCAGTTTTGGTGCCAAATATTTGGGGAAAATGGATTA AATTAAATGTGATCCATGATATTGATGCCTCAAATGTGAAGATTTACATTGATGGAGTTTTTGTTCATGAGGCGATGGGA CGCAGTGGGGTCTCCCATTACTTCAAGTGCGGAGTTTACGCACAAGATGATGCTTCTTACCGTATGGAATCCCGTTGGAA AGGAATTAGAGTTCTAAAAAAATGTTTGTAACATGAGTTCGAGAATGCGGATGAATTTCATGTAAAGTAATAAGTTGGAA GAAAATCAATTAGTGAAAAAATGTCCCATAAATTTTTTTTTATACGTTGTCTAGTATCAATTGAAAATGAATCAC
CDS sequence (LotjaGi1g1v0314800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGATATATGTGCCAGGCCATGGTTGCTCTTTTTAACTTCCTTGTTTGTTGTTCATTCATGCATGCAGCAAGAAGCTG GCCGGGGGTGGACCTAACCTTTGGATTCAATGAAGTTCCTTTGAACAGCTCCAACCTTGTTATTCAGAAGCCTTATGATT TGCCTGAAAGCGCTCGCTATAGCTTTGTCTATGGAGTACACAAGCTGTGGGTGTATTCCACCGATAAACCTCACTCCGTA ACTAGCAAAACCAATCCCCGAACAGAAATCCGTATTACAGGCTATGATTATTCATCCGGGGTGTGGCAATTTGAAGGGCA TTTCTTTGTGCCGGATTGTACTTCCGGCGTGTGCATTATGCAAGTGTTTGGGGCAGCTCCGCCTCATGCCACCACTCTTA TGCTCAGAACCTACAATGGTTCACTTTCATACTATCGGACTCCAGTTTTGGTGCCAAATATTTGGGGAAAATGGATTAAA TTAAATGTGATCCATGATATTGATGCCTCAAATGTGAAGATTTACATTGATGGAGTTTTTGTTCATGAGGCGATGGGACG CAGTGGGGTCTCCCATTACTTCAAGTGCGGAGTTTACGCACAAGATGATGCTTCTTACCGTATGGAATCCCGTTGGAAAG GAATTAGAGTTCTAAAAAAATGTTTGTAA
Protein sequence (LotjaGi1g1v0314800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRYMCQAMVALFNFLVCCSFMHAARSWPGVDLTFGFNEVPLNSSNLVIQKPYDLPESARYSFVYGVHKLWVYSTDKPHSV TSKTNPRTEIRITGYDYSSGVWQFEGHFFVPDCTSGVCIMQVFGAAPPHATTLMLRTYNGSLSYYRTPVLVPNIWGKWIK LNVIHDIDASNVKIYIDGVFVHEAMGRSGVSHYFKCGVYAQDDASYRMESRWKGIRVLKKCL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | - | – | |
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 23 | 23 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| PANTHER | 6 | 220 | 215 | 2.5E-104 | – | |
| PANTHER | 6 | 220 | 215 | 2.5E-104 | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| TMHMM | 7 | 24 | 18 | - | – | |
| Phobius | 19 | 26 | 8 | - | – | |
| Phobius | 27 | 222 | 196 | - | – | |
| Pfam | 42 | 217 | 176 | 7.4E-15 | ||
| SUPERFAMILY | 67 | 208 | 142 | 5.28E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0314800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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