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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0315100 |
| Transcript ID | LotjaGi1g1v0315100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Citrate-binding protein, putative; TAIR: AT5G46220.1 transmembrane protein (DUF616); Swiss-Prot: sp|Q39962|CBPR_HEVBR Citrate-binding protein; TrEMBL-Plants: tr|I3SC51|I3SC51_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0315100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:76099775..76101648) extracted from Lotus japonicus Gifu genome v1.2.
CAACCGTACGTGTTTGACTCTCTTCCATATAAAACCATGTACCCATGTCAAACCTTTCCAAACCATCCAATATTAAGAGA AAAGAACTAGTCTGAAACCATCTTATCTTCAACCTCAAAAATGGTGCAGCTGTTACCAATTTTGCATCTTACCATTTTGT CATTGATCATCTACCAACCTTCCCTGGCCTCAGGTGCTGACAATCCCACAAAAGGGTTCGCCCGGGTTCACTTAGACAGC TCAAATTTTATAGTCGAAAAGCCTTACGATGTTGCAGTGGACGAACGTTACAGCTTCATAAATGGGGTGCACAGGTTTTG GGTATACTCCACGGACAAGCCTCACATGCCTAGCAGCAATACAAAGCCACGAACTGAGATTCGTATCACTGTAAGACCCA ATTCTCTATGTTTCAGATTTGATTAATTCAGTCTTGATACATCACATCAATTTTTTCTTACGTCTCCAATCCTCTTATTT TCGGCGCTGCTATTCTATATATAGTGGATTAATCATGTTAAAAAGTGGTTCTTTCATGAAGAATATATTGACTATAAAAA TTTATCCGATATTATTTATAATATAGTCATTTATGTGCTAAAATTAATTTACATGAAAAAACTCTTTAAACTTGCGAAAT GAAATTTTATTGGTTTACGGTAGACATATATAACTTATTAATTTTTTTTTTCTATTCGAGGATTGTAATGAATCCGACCC ACCTGTGCTTTCAAAAAAAAAAAGGAGAACCCAACCCACCCTACTCTGCCTTAAAACTGGGCAGAGAGGGACGAGTTGAC CCATTAGAGAGAGAATGCGGGTTGGTAACCAACTCGTCTGTCCCACGACAGATTGACAACTTAACCCACAAGAAAAATAA TAATAAATGATGTGAAAGCATTTAAAAAATATTTTTGGCAGGTTGGCTTGCGAGTTGGCTTGCCAAAACCTACTCATGAA ACCACTTTAAATGAATAAGTTACTCATGCAAGTTGACGTGTTATATAAGGCGCGTAGGTTCCTGAGTCATGGTTGTTTGG CTTGCCCTTATCGCACTTTGTCGGGTTAGCCCACAACTAGAGCTCTCTCTGCCACCCTTTTCCTAAATTTTTTTATTACA TTTCTCATTACTTCTATTTTCTATCAAGAAAGTCCACGATACATGTCTTAAACCAACTTTAAGTTTTTGGAGTAAAAGAC CATGAATAGTTTCGGCTGACTTAATTTTCACTTTGCAGGGACACAATTATACATCTGGTGTGTGGCAATTTGAAGGGTAT GGTTATGTGCCTAGTGGCACAACCGGGGTGTGCATTATGCAAATGTTCGGTGGAACCTCCTCTGCGACAACCTTGCAACT TAGGGTCTACAATGGTTCTCTCACTTATTATAGGTCCCCTGTTATGGCTGAGAACATCTACGATAGGTGGTTCAAGGTGA ATGCGATTCATGATGTGGGTGCCTCTAGTGTTAAGGTTTACATTAATGGGGTGCTTAAGTACGAAGGTGCTGATCGTGGA GCCGGAACGCACTACTTCAAGTTTGGGGTTTACGAACAAAATGATCCTTCCGACTACATGGAATCTCAGTGGAAAAATAT CAAAGTTTTTAAAAAGGAAAAACATGACATTTCACCCACACCCCAACCCCAACCCCAACTAGAGAGATAAAAAATAGAAG AGAAGAAACTAGAGATATGATGAACGAAAATGTTCTTTATTAGGAAAGAGCATCCATCAAAAGACAAGAATACCTCACCT TTCTGTATTCTGTCACGTAATTTCAAATACAATTTTATTAATACATTTATTTTTTAAACGCAACAGTGTATTTATGTTTG ATCATGCATTTCGTCTCATATAAAATAACACAAC
CDS sequence (LotjaGi1g1v0315100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGCAGCTGTTACCAATTTTGCATCTTACCATTTTGTCATTGATCATCTACCAACCTTCCCTGGCCTCAGGTGCTGA CAATCCCACAAAAGGGTTCGCCCGGGTTCACTTAGACAGCTCAAATTTTATAGTCGAAAAGCCTTACGATGTTGCAGTGG ACGAACGTTACAGCTTCATAAATGGGGTGCACAGGTTTTGGGTATACTCCACGGACAAGCCTCACATGCCTAGCAGCAAT ACAAAGCCACGAACTGAGATTCGTATCACTGGACACAATTATACATCTGGTGTGTGGCAATTTGAAGGGTATGGTTATGT GCCTAGTGGCACAACCGGGGTGTGCATTATGCAAATGTTCGGTGGAACCTCCTCTGCGACAACCTTGCAACTTAGGGTCT ACAATGGTTCTCTCACTTATTATAGGTCCCCTGTTATGGCTGAGAACATCTACGATAGGTGGTTCAAGGTGAATGCGATT CATGATGTGGGTGCCTCTAGTGTTAAGGTTTACATTAATGGGGTGCTTAAGTACGAAGGTGCTGATCGTGGAGCCGGAAC GCACTACTTCAAGTTTGGGGTTTACGAACAAAATGATCCTTCCGACTACATGGAATCTCAGTGGAAAAATATCAAAGTTT TTAAAAAGGAAAAACATGACATTTCACCCACACCCCAACCCCAACCCCAACTAGAGAGATAA
Protein sequence (LotjaGi1g1v0315100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVQLLPILHLTILSLIIYQPSLASGADNPTKGFARVHLDSSNFIVEKPYDVAVDERYSFINGVHRFWVYSTDKPHMPSSN TKPRTEIRITGHNYTSGVWQFEGYGYVPSGTTGVCIMQMFGGTSSATTLQLRVYNGSLTYYRSPVMAENIYDRWFKVNAI HDVGASSVKVYINGVLKYEGADRGAGTHYFKFGVYEQNDPSDYMESQWKNIKVFKKEKHDISPTPQPQPQLER
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| PANTHER | 4 | 216 | 213 | 3.2E-109 | – | |
| PANTHER | 4 | 216 | 213 | 3.2E-109 | – | |
| Phobius | 4 | 17 | 14 | - | – | |
| Phobius | 18 | 25 | 8 | - | – | |
| Phobius | 26 | 233 | 208 | - | – | |
| Pfam | 39 | 214 | 176 | 2.8E-19 | ||
| SUPERFAMILY | 45 | 207 | 163 | 6.33E-24 | ||
| Gene3D | 50 | 216 | 167 | 7.4E-6 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0315100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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