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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0318900 |
| Transcript ID | LotjaGi1g1v0318900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BTB/POZ domain-containing protein; TAIR: AT2G13690.1 PRLI-interacting factor; Swiss-Prot: sp|Q9SKH2|Y2369_ARATH BTB/POZ domain-containing protein At2g13690; TrEMBL-Plants: tr|G7JBJ6|G7JBJ6_MEDTR BTB/POZ domain plant protein; Found in the gene: LotjaGi1g1v0318900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:76796723..76799683) extracted from Lotus japonicus Gifu genome v1.2.
AGTTAGCTCACTCTCCGAGCTGTTTTTCCATCCTCCGTGTTAGATAATTTCATTCGAATCGAAAACATTCGTACTATAAT AGAATTAACTTTTTGAGGTGTTTTTCCATTTCCACGACTCATACCCAAACCTTTACAAATTAAATATGTATCACTTAAAC CCCTTGCTGACTTTACCACCCCTTATGATGTTAAAAAAAGCATCATCCTCATCATCATGTGCACTCAGTCACTCAGCAAC GTCACCACCATTCTTCTCTCTCTCTCTCTCTTTTCTCTTCTCTTCATTCACTGTTACTGCTGAACTTAACCGTTTCTCAA CCTCCCAATGGACCGTCGGCGACGCCGTACCTGGTGTTGCTCCTTCGCCGTGCCACCCTCCAGCCCGGACAACGCTTCCT TCACCAAACCACACCGCCACAAACCCGGCGACGCCCAATCCAAACCCACCTTCTCCGTCCCAACCTCCCCTCAGAGCTTC AAATCCAGCGGCTCCCGCATCGTCGGCCGGATCGACCCTCGCCGGATCTTATCCCCCGGCAGAGTCTCCCCCATCGAAGA CGCCGCTGCCGTTCCAGACCCCTCTCCCGCTCGCGATTCCGTCACCCGATCTCGGAGCTTCCGCGCACCCCCCGTCGCAC CGCCGACTCCGCCGCCGCCAGTTTCCGTGGAGGGGCTTGACGTGAGGATGAGCTTGAGAGGGAAAAATGGTGGGTGCTTG GTTCTGGAGCTGAACTCGGGGATTCTGTGCGCGAACTCGGAGCTTTTCGCGGGGTTGATTGCGGATTACAAGAAGGGGGT TTCTTCTTCGAGTGGTAGTAGTAAAATGTGTAGGATTGAGGTGCCTGAAGTTGACAATTTGGGAGTTTTCAGAGACACCA TTGAGCTCATGTTTGAAGATGATCTTACCCGAAAGCTTCTCAACCTTGGTGTTTATCGATCCATTGATGTTTTGGAGGTT CCTAGTTTCTTCCCTTTTCCCTTTTTTAACAAAAACTTGTTCTAAATTTCTAATCAATTCAATTTCTTTGTACATTTTGT ACTTAGGTGTTAATTAATGTTTCATTAGCTATTAATTTTTGTGTTTTACACTTTTTTGTTTCATTCTCTGTGCAAAAATA GTAACACTAAGCTTTTATATAATGCACTATGAGTCTATGACTTAGGGGTGAGCTGGGTTGTGAAATCAAGGTTATGGATC ATATTTGTAGTATTTGGTTTATAGTTTATACTTTATATTCAGATGCAATGCTAGAAAAAGTTGTTTTAAAGTTTTATATA AGGCATGCTAGATGATTTTTTTCTTCCTTTTATATCCATGCATTAAAGTTATATTTCTGTGCTGTGTTTTCCATAATTTA GTTTTTGATTGAGCTAAGGGGTGTAGTGTGATCCATATAATCGACTTCACTTGGTGGGATAGGGCTTTTGTTGTTGTTGT TGTTGTGCTGAGTTTTTTATTTGATGGAAGAATCTGTTTTCAAGGGATCAAGATCAAAGAGTTGCATGAAGTTTAGGGAA ACAAAATATACTATCTTACCTGGAAGGAAATATTTAGAGAAATGGAGCAACTCAGCAAGATATATAACGTGCAAGTTGCA ATTAAACCTTTTGATGATTTTGGTGTGGAAGCAATTTTTTCTTTTCATTTTTTGTGTTGAGCCTGCACATTGGTGCCTCT TTTGTCTCTTACATGGTTGTCTTTTGTATCCCTAGGTGTCTGCAGGCATCATGTTCACCAAGGGTGTCTTGTCCTGTTTA AGATACCTTGAGGCTGTTCCTTGGACTGAGGAAGAAGAAGAAAAGTTGAGGAGCCTATTCACGAGGTTTAAGTTTGATGA TGAAACAACAAGGGACATTCTAGGAAGGCTTCACTTGCACAATGCAGTAGATTCCGAGCCAAACATAGCCCGGGAACTTG TTACGTCTATCACCACTTGTGTGGATGCCAATGCAAGAAATGAACTTAAATCCCTAGTCAAGGGTCTTCTTTGCAAAAGC TCGGTATATGAGAAGAACCATCTTGACCTCAGCAAGGAAGATTTGTATTCTGTTTGCCATTCATGTCTGGGTTCACTGAT CAGCCTCTTCGAGGAGGCGAATGATGCCATCCATCCCAAAAGGTTGACAAAGAAAGAGATGAAGAAACCGCTGATTGAGC GCGTCTCGAGACAGGTAGATAACATCAACTGGTTGTTGGAAATCATGCTTGATATGCAAATAGCTGAGGACTTTGTGGAT ATATGGGCAGATCAGCACCAACTTCTTCAAATCCATGATAAAGCATCCCCCATGGTTAGATATGAACTCAGCCGAGTGTC GGCAATTCTGTTTGTTGCCATGGCTACTAGAAAGTTACAATGCCGGTTGGAAGCTAGATCAGGGCTTCTCCAGGCATGGT TTAAACCTATGCTGTTGGACTTCGGTTGGTTGCAGAGATGCAGAAAAGGGCTTGATATAAAAGTGTTGCAAGAGGCAATG GGTCAGACACTTCTTACTCTACCTCTGAAGCAACAACACATGCTGTTCATGGAATGGTTTCGGCACTTCTCAAGCCATGG CACCGAGTGTCCAAATCTAAGCAAGGCTTTCCAAATTTGGTGGCGCAGATCGTTTTTAAGAGGCTCTGAGACGTGTGCCA TTGAATCAAGGTAAAAAATAGCACTATTTATCATTTTTAGTGTTTGTGTACCGTGTAAAGAGTTGCAATTAGGTGATGGA TTCTGAGCTGTGTACACTGAATAACGTGGTTTGATAGGTGATAAACTCCATAGGTTGTTGTATTGGCAGCTTCTTATGCC TAAATGGTAGTATCAAATTTTCTAGGGAATTTTTTCCTCTTTGTTTATTTCATTGTTTTATGTGCATCAATAGCTCAAAG CTAGTTTATATTTTTTTTAAGGAGTGCAATCCAATAATGAAAAGAGAATAAAATGAGTTAAGTAATTTTTTATGAACAGA A
CDS sequence (LotjaGi1g1v0318900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACCGTCGGCGACGCCGTACCTGGTGTTGCTCCTTCGCCGTGCCACCCTCCAGCCCGGACAACGCTTCCTTCACCAA ACCACACCGCCACAAACCCGGCGACGCCCAATCCAAACCCACCTTCTCCGTCCCAACCTCCCCTCAGAGCTTCAAATCCA GCGGCTCCCGCATCGTCGGCCGGATCGACCCTCGCCGGATCTTATCCCCCGGCAGAGTCTCCCCCATCGAAGACGCCGCT GCCGTTCCAGACCCCTCTCCCGCTCGCGATTCCGTCACCCGATCTCGGAGCTTCCGCGCACCCCCCGTCGCACCGCCGAC TCCGCCGCCGCCAGTTTCCGTGGAGGGGCTTGACGTGAGGATGAGCTTGAGAGGGAAAAATGGTGGGTGCTTGGTTCTGG AGCTGAACTCGGGGATTCTGTGCGCGAACTCGGAGCTTTTCGCGGGGTTGATTGCGGATTACAAGAAGGGGGTTTCTTCT TCGAGTGGTAGTAGTAAAATGTGTAGGATTGAGGTGCCTGAAGTTGACAATTTGGGAGTTTTCAGAGACACCATTGAGCT CATGTTTGAAGATGATCTTACCCGAAAGCTTCTCAACCTTGGTGTTTATCGATCCATTGATGTTTTGGAGGTGTCTGCAG GCATCATGTTCACCAAGGGTGTCTTGTCCTGTTTAAGATACCTTGAGGCTGTTCCTTGGACTGAGGAAGAAGAAGAAAAG TTGAGGAGCCTATTCACGAGGTTTAAGTTTGATGATGAAACAACAAGGGACATTCTAGGAAGGCTTCACTTGCACAATGC AGTAGATTCCGAGCCAAACATAGCCCGGGAACTTGTTACGTCTATCACCACTTGTGTGGATGCCAATGCAAGAAATGAAC TTAAATCCCTAGTCAAGGGTCTTCTTTGCAAAAGCTCGGTATATGAGAAGAACCATCTTGACCTCAGCAAGGAAGATTTG TATTCTGTTTGCCATTCATGTCTGGGTTCACTGATCAGCCTCTTCGAGGAGGCGAATGATGCCATCCATCCCAAAAGGTT GACAAAGAAAGAGATGAAGAAACCGCTGATTGAGCGCGTCTCGAGACAGGTAGATAACATCAACTGGTTGTTGGAAATCA TGCTTGATATGCAAATAGCTGAGGACTTTGTGGATATATGGGCAGATCAGCACCAACTTCTTCAAATCCATGATAAAGCA TCCCCCATGGTTAGATATGAACTCAGCCGAGTGTCGGCAATTCTGTTTGTTGCCATGGCTACTAGAAAGTTACAATGCCG GTTGGAAGCTAGATCAGGGCTTCTCCAGGCATGGTTTAAACCTATGCTGTTGGACTTCGGTTGGTTGCAGAGATGCAGAA AAGGGCTTGATATAAAAGTGTTGCAAGAGGCAATGGGTCAGACACTTCTTACTCTACCTCTGAAGCAACAACACATGCTG TTCATGGAATGGTTTCGGCACTTCTCAAGCCATGGCACCGAGTGTCCAAATCTAAGCAAGGCTTTCCAAATTTGGTGGCG CAGATCGTTTTTAAGAGGCTCTGAGACGTGTGCCATTGAATCAAGGTAA
Protein sequence (LotjaGi1g1v0318900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDRRRRRTWCCSFAVPPSSPDNASFTKPHRHKPGDAQSKPTFSVPTSPQSFKSSGSRIVGRIDPRRILSPGRVSPIEDAA AVPDPSPARDSVTRSRSFRAPPVAPPTPPPPVSVEGLDVRMSLRGKNGGCLVLELNSGILCANSELFAGLIADYKKGVSS SSGSSKMCRIEVPEVDNLGVFRDTIELMFEDDLTRKLLNLGVYRSIDVLEVSAGIMFTKGVLSCLRYLEAVPWTEEEEEK LRSLFTRFKFDDETTRDILGRLHLHNAVDSEPNIARELVTSITTCVDANARNELKSLVKGLLCKSSVYEKNHLDLSKEDL YSVCHSCLGSLISLFEEANDAIHPKRLTKKEMKKPLIERVSRQVDNINWLLEIMLDMQIAEDFVDIWADQHQLLQIHDKA SPMVRYELSRVSAILFVAMATRKLQCRLEARSGLLQAWFKPMLLDFGWLQRCRKGLDIKVLQEAMGQTLLTLPLKQQHML FMEWFRHFSSHGTECPNLSKAFQIWWRRSFLRGSETCAIESR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| MobiDBLite | 1 | 113 | 113 | - | – | |
| PANTHER | 2 | 520 | 519 | 1.9E-223 | ||
| PANTHER | 2 | 520 | 519 | 1.9E-223 | – | |
| Phobius | 8 | 15 | 8 | - | – | |
| Phobius | 16 | 20 | 5 | - | – | |
| Phobius | 21 | 522 | 502 | - | – | |
| MobiDBLite | 39 | 56 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0318900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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