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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0319800 |
| Transcript ID | LotjaGi1g1v0319800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase-like superfamily protein; TAIR: AT4G33440.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|I1KBJ8|I1KBJ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0319800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:76903384..76907973) extracted from Lotus japonicus Gifu genome v1.2.
CCCATACCCTCTTATATAATATTTTTATTTTTGTTTAAAAAAAACATATATTTCCTTTCCCCCAACACACTCGTATTTTC CTTTTTTAATTCCTCAAAATTTCTGTCATCGCAAACGGCCAAACGCGCTCTCATATGCAACAGTAGTGCGATCCGCACTT CGACTTTCACGTCTTTCTGCCTATCACAACACGCCAACACTAACACCGCAACCGCATCTTCCTCCACCACCACCACCACC CTTCTCCGTCACCACCACCACCACACACCTCAAAAACCCTTCATCTCCGTCGTTCATTCGTTTTATGCTGCATCATTCCA TTTCTCCCTTCATGTTCCGATGGAATCTGACAAAGTAACCCTCGCTCCTCTCATCCTAGGAACCTGTACCAGACCCTCAT GGGCGGTGCTCTTCCTCCTCTTCACCGTCGTCACCATCCTCTCCCTCCAGCTTTCCACGTGGTCCGTTTTACCGGTCTGG ACGCTCTCCGGTTCGGTCGGACCGGAGCCATCCCCGCCGGATCAGACCACCTGCTCCGGTTTCTTCCACGACGTTCCACG GCGGAAGGTGGTCGCGTCGATCGAGGATTTCGGCGGCGTTGGCGACGGGAAGACCTCGAACACGGAGGCGTTTCGGAGGG CGATTCGGTTCATGCAGCGCTTCCGTGATCGAGGTGGGTCCCAGCTGAATATCCCCAACGGAAAGTGGCTCACCGGTAGT TTTAACCTCACCAGTGATTTCACGCTTTTTCTACAACAGGGTGCTGTTATTTTGGCTTCTCAGGTGCCTAATATCATTGT CCTTACATTCTTTTTGTTCTTATTTCTGTTTCACATTTTTTCTTATATGTTTGTTTTGAAAGAAGTTACTGCCAGTAACT TTTATAGAAGTGATTTTTTTTATTACAATAGAAGTGATTCTGACAAGTTAGAAGTAGATTGAAATATGCTACATGACTAT TCTGAACCTGCAATTTTATCTGACAATAGGAGTATTTTTTTACTCTCGTAATATTTCGATCCGAGTGTAGTGAATGTTAA AAGTTTTCCTAAAAGTGTGTGCAACTTCTAAGAATCGAACACTCACCTAGGGTTCAAACAGTCACCATTTACATTATGTT ATTTAGTTTGAGTAAAATTTACATTTACTGGCAAAATTAATAAAAACCTGTTTGGTTGAACAGCAACTTGGGTTTTCTTC TGCAGATGATTTTGGTTTTGACTTTTTTATGGAAAAAATTGTAATAAACAAGTCAATTGGAAAGTCTTTTTCATTTTTCA ATAAAATTGCAGTGTTTTTGTTTTCCTCTCTTTGGAAAAGTAGTGAGATGTTGCTTTTTGACTTCTTTGGCGATATGTGG TACATAGTCCAGAAACAAAATGGAACCCACCAAATAATGATGTCTGTTTTATACCTTGCAAGTTTTATTTTCCTATTTAT TTTTATTCTGTAAACACTTTTATGTTGATTAATTATACTTATGGCAATTTGATTTAAGTGTAATATTTTTTTTGCTAATT AGAAGTTTCAATTAACAGGACCCAGAAGAATGGCCTATAATTGAACCATTGCCATCTTATGGAAGAGGCAGAGAAAGGTT AGGTGGAAGACATATTAGCCTTATACATGGAAATGGAGTCCGCAATGTTATCATCACAGGTAAAATTTATGGACTTTTTC CTTCAATTCTCACTTATTAATTTGGGAAAGAGAAAGGGAGAGAGAGAAAAGTAAAAAAATATTCCTCCTTTTTGGCACAA TGCTAGCAAAATAGGCCCCGTTTGGATAAACAGCTTAATTAAGCGCTTATGGTCATAAGCGCTTATGACATAAGCGCTTA TTCATAAGCTATTTTTAAAAATTTATTGAAATAAATTAAAAATAAGTTGTGTATAAGCATAAGCTGTTTTTCATAAGCTA TCCTGAGTAGCTTATGAAAATAAGCTGAAAATAGCTTATGGCAGACCATAAGCTGTTTGCATAAGCTCTCCCAAACACTG GCATAAGAGCTTATGCTGTCAGATAAGCTCAAATAAGCTCTTCCAAACTGGGCCATAGTCTCTGAAGACTGAAGGCGAAA TTGGGTTACCTAGTCCATGAGGGCTCCAATGACTACTACTATGTTCAAAAGTTTCAACTTTCAACGCAGTGATTGATGCT AATTTAAGGGGAAAAAGCCAAAAAATAATTTAGTTATCTGGTTTTGTAGGACAAAATGGGACAGTTGATGGTCAAGGGAA GATGTGGTGGGAACTTTGGTGGAACAGAACATTGGAGCACACAAGGGGCCACCTCCTTGAACTAATGTACTCTGACAATG TTCTTGTCTCCAACCTCACCTTTCGAAATTCTCCATTTTGGACCATCCATCCTGTTTACTGCAGGTTTGATCTTCTTGGC TCTTTGTCTCTTGTGTTAGTCCTAAGGGGCGTTTGTTTCAAGGTTTGAGATCGCATTCCCGGGAATGCGGGAATGTTATT CTCAGGAATATGATTACCGGGTATGTTATTCCTGGGTAAATTTTATAAATGTGTTTGGTAAGTATTTTGTATTTCCGGGA ACATTTTAAAATTTTCTTAATTTAAAAATTAAAAAAACTTAAAAATAAAGGTAAAAATGATAAATTGTGGGAGAAGTGGG AAGTTACATTCATCTTTTCCATGGGAATGTAAGATTCCCAACCTTTTTCATGGGAATCAATATGAAGGAAATCATGAGAA TTGTGAAAGTTATTTTATTCCCGGGAATGATTGATACCCAGGAATCATAGTTTCCAATCTTGTAACAAACGCAGAAATGT TCATTCCCAACCTTCATATTCCCGGGAATCTCTTTCCAAATCTTGAAACAAACGCCTCCTAATTGGTACTATAATACCAT AAAATGCAGCTAACAAATTTCTCAAATTATCAGGAGCATTTTCAAAACACACTCCTAATAGCTCTGAGTGATTTTTTGGG AAACTATTAAATCGTAATTTAGTTCAATTAAATGGATATCTTTTTACATTGTGCACATTGCAAAATCATACCCTGTCTGA TCATACATGCTGAAAGAAATTCAGTTTAATTATGCTGATAGCTTTTGTAACTACAGAAACACTTGAAATTCAATAACAGC TTTTTCATATTGTTGTTTCAGTAATGTTGTGATCAAAGGAATGACAATCTTGGCTCCTCTCAATGCTCCAAACACTGATG GCATAGACCCAGGTTTGTCCTTTTTTACTATTTACCCTCTTTCCTGCATTCTTTTATCCTTGGCTTAGAGCTTCCTGTGC ACAAATTCAAGTGGACAAGTGATAGACATAAATAACTTTACAGTCTCTTATCTTACCTGTTAATTTCCTTTATGATGATT CAGACTCAAGCACCAACGTATGCATTGAAGATAACTACATAGAAAGTGGAGATGATCTAGTAGCCATCAAGAGTGGTTGG GATCACTATGGAATCACCATGGCCCGTCCAAGCACCAACATCATAGTGCGGAGAGTTTCGGGCACCACCCCAACTTGTTC TGGAGTAGGAATAGGCAGCGAGATGTCTGGTGGAATTGCAAACATTACAATTGAGAATTTGCACGTGTGGGATTCTGCAG CTGGTGTTCGCATAAAATCTGATAAAGGCAGAGGGGGCTATATAACAAATGTTAGTATAAGTGATATAAGAATGGAGAGA GTGAAGATACCTATTAGGTTCAGTAGAGGTTCAAACGACCACCCTGATGATGGGTGGGATCCAAAAGCTGTTCCAAGATT CAAGGACATTTTAATCAGTAATATAATTTGTGTGAATTCAACAAAAGCCCCAGTTTTGGAAGGCGTAGAGGGCTCATCAT TTGAAGGCTTGTGTTTCAGAAATATTTCTCTTATTGGTGTTGCCTCATCTTCAACATGGCATTGTGAACATGTCTCTGGT TTTGCCACTGATGTGTTACCTGTGCCATGTTCTGAGTTGAAGAACAATGCCAACTCATCTTGGTGTTCACCTTCCTGATT TATACCGTTCTAAAATCTGGAATGTTCCAAGTTCCAAAAATCAGGGTGTGCTGACCTTACTGCTTGATTAAGCAGCTCTT GGTCTTGCTTGGGCAGATTGATTTGATGCAAAAACAATGATGGAATGAATTAGGTTCATGTAACCTGAATTAACGTTACA TATTCCATGTTTATGATTGGAACTGGCAGAATACCAATCTGGTTGATGTCATGCTCCCTCTTCTGCCATGATTTGTGGCT ATAGAACAAGAAGTTGGAATTGGGGTTTAGGATTTGTAGCTGTATCAAATTTGGGTTTAGCTTGCTTAGCACCAGCAGTG AACCAATTATTCTTGTGCTTTACTTTACGAGATTTTTTCCTGTAAAATTATTTTTTGGTGTTGTATAGACAGTTTGAGAG CCTGACTTCAGAGAATTTTTTTTTTGAACTAGATTGTTGTGTAAGGTGGATGATGAATCAGGGGTGTTTATGATAAATTA TTAATTATTTTTAGTTGGAGAAAACTATTGTAGATTATCATGGCTGTAAAATATTTATTGTAGACACTATTTTAAAATCT AAGGCAGTGGGATTAAACTTCAGAATAGCC
CDS sequence (LotjaGi1g1v0319800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATCTGACAAAGTAACCCTCGCTCCTCTCATCCTAGGAACCTGTACCAGACCCTCATGGGCGGTGCTCTTCCTCCT CTTCACCGTCGTCACCATCCTCTCCCTCCAGCTTTCCACGTGGTCCGTTTTACCGGTCTGGACGCTCTCCGGTTCGGTCG GACCGGAGCCATCCCCGCCGGATCAGACCACCTGCTCCGGTTTCTTCCACGACGTTCCACGGCGGAAGGTGGTCGCGTCG ATCGAGGATTTCGGCGGCGTTGGCGACGGGAAGACCTCGAACACGGAGGCGTTTCGGAGGGCGATTCGGTTCATGCAGCG CTTCCGTGATCGAGGTGGGTCCCAGCTGAATATCCCCAACGGAAAGTGGCTCACCGGTAGTTTTAACCTCACCAGTGATT TCACGCTTTTTCTACAACAGGGTGCTGTTATTTTGGCTTCTCAGGACCCAGAAGAATGGCCTATAATTGAACCATTGCCA TCTTATGGAAGAGGCAGAGAAAGGTTAGGTGGAAGACATATTAGCCTTATACATGGAAATGGAGTCCGCAATGTTATCAT CACAGGACAAAATGGGACAGTTGATGGTCAAGGGAAGATGTGGTGGGAACTTTGGTGGAACAGAACATTGGAGCACACAA GGGGCCACCTCCTTGAACTAATGTACTCTGACAATGTTCTTGTCTCCAACCTCACCTTTCGAAATTCTCCATTTTGGACC ATCCATCCTGTTTACTGCAGTAATGTTGTGATCAAAGGAATGACAATCTTGGCTCCTCTCAATGCTCCAAACACTGATGG CATAGACCCAGACTCAAGCACCAACGTATGCATTGAAGATAACTACATAGAAAGTGGAGATGATCTAGTAGCCATCAAGA GTGGTTGGGATCACTATGGAATCACCATGGCCCGTCCAAGCACCAACATCATAGTGCGGAGAGTTTCGGGCACCACCCCA ACTTGTTCTGGAGTAGGAATAGGCAGCGAGATGTCTGGTGGAATTGCAAACATTACAATTGAGAATTTGCACGTGTGGGA TTCTGCAGCTGGTGTTCGCATAAAATCTGATAAAGGCAGAGGGGGCTATATAACAAATGTTAGTATAAGTGATATAAGAA TGGAGAGAGTGAAGATACCTATTAGGTTCAGTAGAGGTTCAAACGACCACCCTGATGATGGGTGGGATCCAAAAGCTGTT CCAAGATTCAAGGACATTTTAATCAGTAATATAATTTGTGTGAATTCAACAAAAGCCCCAGTTTTGGAAGGCGTAGAGGG CTCATCATTTGAAGGCTTGTGTTTCAGAAATATTTCTCTTATTGGTGTTGCCTCATCTTCAACATGGCATTGTGAACATG TCTCTGGTTTTGCCACTGATGTGTTACCTGTGCCATGTTCTGAGTTGAAGAACAATGCCAACTCATCTTGGTGTTCACCT TCCTGA
Protein sequence (LotjaGi1g1v0319800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESDKVTLAPLILGTCTRPSWAVLFLLFTVVTILSLQLSTWSVLPVWTLSGSVGPEPSPPDQTTCSGFFHDVPRRKVVAS IEDFGGVGDGKTSNTEAFRRAIRFMQRFRDRGGSQLNIPNGKWLTGSFNLTSDFTLFLQQGAVILASQDPEEWPIIEPLP SYGRGRERLGGRHISLIHGNGVRNVIITGQNGTVDGQGKMWWELWWNRTLEHTRGHLLELMYSDNVLVSNLTFRNSPFWT IHPVYCSNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDNYIESGDDLVAIKSGWDHYGITMARPSTNIIVRRVSGTTP TCSGVGIGSEMSGGIANITIENLHVWDSAAGVRIKSDKGRGGYITNVSISDIRMERVKIPIRFSRGSNDHPDDGWDPKAV PRFKDILISNIICVNSTKAPVLEGVEGSSFEGLCFRNISLIGVASSSTWHCEHVSGFATDVLPVPCSELKNNANSSWCSP S
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| PANTHER | 14 | 479 | 466 | 1.3E-270 | – | |
| PANTHER | 14 | 479 | 466 | 1.3E-270 | – | |
| TMHMM | 21 | 43 | 23 | - | – | |
| Phobius | 21 | 44 | 24 | - | – | |
| Phobius | 45 | 481 | 437 | - | – | |
| Gene3D | 69 | 461 | 393 | 1.3E-109 | ||
| SUPERFAMILY | 73 | 470 | 398 | 1.83E-96 | ||
| Pfam | 174 | 455 | 282 | 2.6E-43 | ||
| SMART | 246 | 272 | 27 | 930.0 | ||
| SMART | 273 | 305 | 33 | 430.0 | ||
| SMART | 307 | 329 | 23 | 7100.0 | ||
| SMART | 335 | 356 | 22 | 26.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0319800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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